mfap5 (mfap5,LOC104934636,LOC104960418,LOC107082259,LOC105934952)


Basic Information

Item Value
gene id mfap5
gene name mfap5,LOC104934636,LOC104960418,LOC107082259,LOC105934952
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 23433649 ~ 23437044 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039806512.1
aggaggaggagaaggaggagggaggaggagagggaaggaggagaaagaagaaaagacaaaagattcataaaactaaactaaagcaGTTGTGGACGACAGCAAAAGTTCTCGTAAAACTCACCCTCTTACAAGTTTAAGGAATGGGCAGCCTTCCAGTGGTCCTGCTCCTCTGCAGTTTCCACGCGTTCACAGCTGTTGCCCGAGCCCAGCAGCCCGAGAACACTGACACCACCTTGCCAGCCAACTGTAGGGAGGAGATGTATCCTTGCACCAGGATGTACTCGGTTCACCGGCCCATCAAGAgatgtattggtgctctttgtCTCTACAGCCTTCCTCGTGTCTACGTGATCAACAATGAGATCTGCATGAGGACGGTGTGCCAACAGGATGAGTATCTGAAAGCCGAACTGTGCAGAGAGCTGTCCGGGTGGCCCAGGCGTGTTGAGAGGTCATCTAATAGGAAACGCTGTCGCAATCGCCGTAGCAACCCCAAAACCTGGGCAAACGAGGCCTGATGGGGCCCAGGATGGCGATGTGACCACCTCTGAGGATGGAGCCTCAAACCAGGGACATCGTCAAATAAAAACAGCCCATAACACCATAAATCAACCACTTGACAcctgtgggtgtttttttttctctttcacacGTACACACAAGTGTGCAGAGTCATATCTATGTTTATGTATTAGTCTTTTGAGTGTGAAATATTGAAGCtcatttcatgtgttttttgacACAGATCATGTCTTCCGTGGTTTACGATCCATTAAAGGTACTGTAGTAATGGG
>XM_039806513.1
agaaaagacaaaagattcataaaactaaactaaagcaGTTGTGGACGACAGCAAAAGTTTAATGCGATGTGTGGTTGTATGCAGAGTTCACTCGTAAAACTCACCCTCTTACAAGTTTAAGGAATGGGCAGCCTTCCAGTGGTCCTGCTCCTCTGCAGTTTCCACGCGTTCACAGCTGTTGCCCGAGCCCAGCAGCCCGAGAACACTGACACCACCTTGCCAGCCAACTGTAGGGAGGAGATGTATCCTTGCACCAGGATGTACTCGGTTCACCGGCCCATCAAGAgatgtattggtgctctttgtCTCTACAGCCTTCCTCGTGTCTACGTGATCAACAATGAGATCTGCATGAGGACGGTGTGCCAACAGGATGAGTATCTGAAAGCCGAACTGTGCAGAGAGCTGTCCGGGTGGCCCAGGCGTGTTGAGAGGTCATCTAATAGGAAACGCTGTCGCAATCGCCGTAGCAACCCCAAAACCTGGGCAAACGAGGCCTGATGGGGCCCAGGATGGCGATGTGACCACCTCTGAGGATGGAGCCTCAAACCAGGGACATCGTCAAATAAAAACAGCCCATAACACCATAAATCAACCACTTGACAcctgtgggtgtttttttttctctttcacacGTACACACAAGTGTGCAGAGTCATATCTATGTTTATGTATTAGTCTTTTGAGTGTGAAATATTGAAGCtcatttcatgtgttttttgacACAGATCATGTCTTCCGTGGTTTACGATCCATTAAAGGTACTGTAGTAATGGG

Function

symbol description
mfap5 Predicted to be involved in embryonic eye morphogenesis. Predicted to be located in extracellular region. Predicted to be active in microfibril. Human ortholog(s) of this gene implicated in thoracic aortic aneurysm. Orthologous to human MFAP5 (microfibril associated protein 5).

NR:

description
microfibrillar-associated protein 5-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039806512.1 True 794 mRNA 0.48 7 23433649 23437044
XM_039806513.1 False 777 mRNA 0.48 8 23433697 23437044

Neighbor

gene id symbol gene type direction distance location
sbk3 sbk2,LOC100700842,LOC101487833,LOC102212418,LOC102777020 coding upstream 7004 23420347 ~ 23426645 (+)
foxj2 NA coding upstream 31939 23395934 ~ 23401710 (+)
isoc2 isoc2 coding upstream 37978 23392999 ~ 23395671 (+)
rcvrn2 LOC104929791,LOC103367647,LOC104960422 coding upstream 50976 23378605 ~ 23382673 (+)
cacng8b cacng8,LOC104960431,LOC105934996,LOC106536814 coding upstream 110888 23304312 ~ 23322761 (+)
slc2a3b LOC104960409,LOC101465952,LOC102775578,LOC101063282 coding downstream 61745 23498789 ~ 23508665 (+)
ephb6 ephb6,LOC102800023,LOC104960407 coding downstream 75511 23512555 ~ 23556483 (+)
m6pr NA coding downstream 156817 23593861 ~ 23600002 (+)
phc1 phc1 coding downstream 164058 23601102 ~ 23608496 (+)
clcn1b clcn1,LOC102795222 coding downstream 215524 23652568 ~ 23684905 (+)
G75199 LOC103372680 non-coding upstream 79474 23351145 ~ 23354175 (+)
G75197 NA non-coding upstream 82882 23346840 ~ 23350767 (+)
G75196 u2af2 non-coding upstream 90972 23339846 ~ 23342677 (+)
LOC120561704 NA non-coding upstream 100893 23331840 ~ 23332756 (+)
G75192 NA non-coding upstream 105020 23328242 ~ 23328629 (+)
G75227 NA non-coding downstream 52 23437096 ~ 23441226 (+)
G75301 NA non-coding downstream 57169 23494213 ~ 23494477 (+)
LOC120561968 NA non-coding downstream 194372 23631416 ~ 23633834 (+)
G75427 NA non-coding downstream 446133 23883177 ~ 23884631 (+)
G75483 ptpn6 non-coding downstream 506449 23943493 ~ 23948403 (+)
LOC120562293 LOC103360151,LOC102310947,LOC102785150 other upstream 350502 23070587 ~ 23083147 (+)
cnot3a cnot3 other upstream 522129 22900089 ~ 22911520 (+)
myh14 NA other upstream 613596 22785578 ~ 22820053 (+)
LOC120562539 LOC102295960,LOC100711672,LOC102209551,LOC101487210,LOC102786116 other upstream 728233 22689070 ~ 22705416 (+)
LOC120562537 NA other upstream 765764 22660479 ~ 22667885 (+)
LOC120562612 LOC103367657,LOC105025867,LOC103136704 other downstream 54081 23491125 ~ 23494034 (+)
trpv6 LOC104929027,LOC104960406,LOC103388006,LOC107082237 other downstream 123804 23560848 ~ 23571243 (+)
casp2 casp2,LOC102795506,LOC103369458 other downstream 204511 23641555 ~ 23651496 (+)
LOC120563204 NA other downstream 331189 23768233 ~ 23813408 (+)
LOC120563047 vamp1,LOC104928996 other downstream 436865 23873909 ~ 23879415 (+)

Expression


Co-expression Network