hoxa2b (LOC100534423,LOC102306217,LOC102196176,LOC102792302)


Basic Information

Item Value
gene id hoxa2b
gene name LOC100534423,LOC102306217,LOC102196176,LOC102792302
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 19876877 ~ 19878668 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039806514.1
TAATCTGAATCAACCTAAAACTCAGCGAAATTTCAACacaaggaggaggagatgaatTACGAATTTGGGCGAGAAAGTGGTTTTATCAACAGCCAGCCGTCGCTCGCTGAGTGCCTGACATCTCTCACTAACCCTGTCGGTGATGCATTTCAAAGTTCATCAATCAAGAGCTCGGCGCTTTCACAGTCGACACTGATTCCTCCTCCTTTTGAGCAGACCATCCCCGGCCTTAACCCGGGCATCCACCCACGCCACAGCCGCTCAAAGCAGTCGCTGCAGGCTGCATCCCTACCCCCGGAGTACCCGTggatgaaggagaagaaaagCATCAAGAGAAACCAGACTGATGCTGCTTCTGCGGCTGCAACAACAACGACTGACTCCTCTCCACTCTACTTCTCCCCCCAAGgttcacCAGAGGGGCCAGAGGTTGGTGTTGGCGGTGGAGGGGCATCCCGGAGGTTGAGGACCGCGTATACCAACACCCAACTTCTGGAGCTGGAGAAGGAGTTTCATTATAACAAATACCTGTGCAGACCGAGGCGAGTGGAAATAGCTGCTTTGCTGGATTTATCAGAGAAGCAGGTGAAAGTGTGGTTTCAGAACAGGAGGATGAAACACAAGAGGCAGACCCACTGCAAGGAGAACCGGGACAGTGAGGGGATATACGCGTGCCTGGACGACGGGCCGGAGGACGAGTTAGAGCAGGCGGCGGACAGCAGCGCAGCCGGGACGCTCCTGGAGAGGGAGAGGTATTTCCACCAAAATACCTTAACTTCACAACATTGTCCGAACGGGCACAATGGGGAGAACCAAAGCCCGACTGTCACGCCTTTGACCAGCAATGAGAAAAATCTGAAACATTTTCCTAACCCGGCACCCACTGTTCCTATCTGCGTGTCAACAATAGGCCCGGACAATGATAATTCCCCGGGCCTGGACGTCTCTTTGCAGGATTTCCAAGTtttctcatcctcctcctctttctcaccAAGTTTGTCAGATTCGGCACAAAGTCCCCTGTCTTTATCATCCGAAACTTTTGACCTTTTCTCAGAAACACTCACAACAATCGACCTGCAAAACTTGAGCTATTGACCGATGTTTTATTTGAATTCAGATACTTGTGTTCAGTTTATATGATCAGTTATAATAGATCTCACAAATAAGGTAAGTtaaagcaaaaacaacaaagctACTATTTAGTCTGTATGGCAGTTTAGCATTGGGCTGCGAGAGGAGAGTTTATTTTTATATGGATTTCGACTATAACTGAGCAGAATAATTTTCTTGAAATAAAACTTTACATTGAT

Function

NR:

description
homeobox protein Hox-A2b-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039806514.1 True 1313 mRNA 0.48 2 19876877 19878668

Neighbor

gene id symbol gene type direction distance location
hoxa9b hoxa9,LOC104927766,LOC104949899,LOC103364041 coding upstream 6139 19869180 ~ 19870738 (+)
hoxa10b hoxa10,LOC103364043,LOC104927764,LOC100692649 coding upstream 9276 19865155 ~ 19867601 (+)
hoxa11b LOC102793196,LOC102195329,LOC104949897,LOC101079822,LOC103364044 coding upstream 15602 19859104 ~ 19861275 (+)
hoxa13b LOC103364045,LOC102793494,LOC100691939,LOC104927762,LOC104949896 coding upstream 23289 19851243 ~ 19853588 (+)
hibadhb hibadh,LOC104927761,LOC100691671,LOC101485952,LOC102793794,LOC102194756,LOC105926386,LOC103478572 coding upstream 29475 19838549 ~ 19847402 (+)
skap2 NA coding downstream 3209 19881877 ~ 19891979 (+)
LOC120561951 NA coding downstream 64319 19942987 ~ 19945175 (+)
osbpl3b osbpl3,LOC102198167 coding downstream 68788 19947456 ~ 19976994 (+)
gsdmeb NA coding downstream 100089 19978757 ~ 19988747 (+)
si:ch211-269k10.4 NA coding downstream 210197 20088865 ~ 20093308 (+)
G73836 NA non-coding upstream 56286 19820235 ~ 19820591 (+)
G73776 hdac9 non-coding upstream 237418 19634873 ~ 19639459 (+)
LOC120562701 NA non-coding upstream 251266 19614503 ~ 19625611 (+)
LOC120562732 NA non-coding upstream 420261 19453769 ~ 19456616 (+)
G73606 NA non-coding upstream 556829 19319438 ~ 19320048 (+)
G73871 NA non-coding downstream 140441 20019109 ~ 20052006 (+)
G73881 NA non-coding downstream 162203 20040871 ~ 20046380 (+)
G74067 NA non-coding downstream 435816 20314484 ~ 20318117 (+)
G74081 NA non-coding downstream 461673 20340341 ~ 20340927 (+)
G74091 NA non-coding downstream 524155 20402823 ~ 20423897 (+)
G73779 hdac9 other upstream 227366 19646975 ~ 19649511 (+)
si:ch211-254p10.2 LOC102209663,LOC101158134,LOC102295699,LOC101064473 other upstream 423594 19447167 ~ 19453283 (+)
hcst LOC104925504,LOC104961397 other upstream 684775 19190020 ~ 19192102 (+)
G73570 LOC103371659 other upstream 717882 19148613 ~ 19158995 (+)
kmt2bb kmt2b other upstream 1014919 18833245 ~ 18861958 (+)
LOC120561838 tppp other downstream 314022 20192690 ~ 20209327 (+)
si:ch211-257p13.3 kifc3,LOC102783047 other downstream 335920 20214588 ~ 20226991 (+)
gra NA other downstream 443662 20322330 ~ 20325961 (+)
glipr2l glipr2 other downstream 721655 20600323 ~ 20605165 (+)
sec61b sec61b,LOC102796100 other downstream 1129345 21008013 ~ 21011414 (+)

Expression


Co-expression Network