nr4a3 (nr4a3)


Basic Information

Item Value
gene id nr4a3
gene name nr4a3
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 21080886 ~ 21103601 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039806523.1
GGCCATGGTGCGCTCTGCTGCAGTGAGTTGGCGCACGGCGCACAAGGGTCCGCTGGTTTGGTTTCAGGTCCGACTCTCACATGTctagatctctctctctctctctctctctctctctctctctctctctctctctctctctctccctctctctctctgaatgaaCCCTGAGCATACGAATACGGCGGTGATCAGAGGCAAGAAAAGCGATGGCCTGGAGGCACTGGCACAGACTGCTTTTATAAAAGTTGTCACTTCTGTAGACACAGGTTCGGAAGAGCGCGCCCAGCCGAGCTCGGAGCCCCGGCAATCGGACACTTCCTTTACGACGCCCGCCGAGTCCTCCTCGCTCCAGGAGCCCTGTCCCGGTCGCAGCCACGCCACCCCTCAATCCCGGACACTCAGCACCATTCAGCGCGAAGCTCTTTCACCAGACATGCCCTGTGTGCAGGCTCAGTACGGGCCCGCCCCTCCAGGCTCAGCCTACTCTGGCCAGTCCTTTGGTTACCAGGGCGACAGCTATAGCTCTGACCTCATGACCCCTGACTACACCAAGCTGGACCTGGGTGGTGGTGAAATCTCTGCCGCCGCCACCACCTCCCTCCCCAGCTTCAACGTCTTTGTGGAGGGGAGCTACGAGCCCAAGTCCTCCTGCCTCTACCAGATGCCTACACACAGGCATAtcaaaaaggaggaggagagctaCCCAACTGCTCCGCCACTGGAGGCCATGGCCTCTTCCACCATGTACTTTAAACAGtctcccccctccacccccaccaCCCCATCCCTGCCGCcccagcctggcacctccttcCTGTGGGGGGGCGCGCACCCCCTGGCCCCTCCATCACACCCCCACTCTTTGGGCTCCAGCCTGGAGACGGGCCCCCTTAAGTCGCCCCGGTTTTCGCACTTCTACCAGCACTCGCCGCCCCACAGTGGCGGCAGCATCAGCGGTTACGAAAGTCTGGGTGGAGGACTGGTTcgcacctcctcctcttcctcctcctcctcatcctcggTCTCCCATCCTCACTGTCCACCCCTGGAGCAGCCCATGTACCAGCTGCACCGTGGGGCCGGAGGCAGCAGCCTCGCCTTCCGCTCCCTGGCTCTTGGGCCCTGCGGCCCCCTACTAGGAGACAGCCTGCCATCGCCTCCCCCACGTGGCCCCCAAGGAGAGGGCACCTGTGCGGTGTGTGGGGACAATGCGGCCTGCCAGCACTACGGCGTACGCACTTGTGAGGGCTGCAAGGGCTTCTTTAAGCGCACCGTGCAGAAAAACGCCAAGTATGTGTGCCTGGCCAGTAAGAACTGTCCTGTGGACAAGAGGAGACGCAACCGCTGCCAGTACTGCCGCTTTCAGAAGTGTCTGAGTGTCGGCATGGTGAAGGAAGTGGTACGTACTGATAGCTTGAAGGGGCGCCGAGGCCGTCTGCCTTCCAAACCAAAGAGCCCCCTGCAGACAGAAGCGTCTCCTCCTTCTCCACCCCTCAGCTTGCTCTCCGCTCTGCTCAGGGCTTATTCCCACTGCACGCCCCGTGACCTCGACTACAGCCAGTTCAGTGCTGCagaccctccctcctcctcctcagatgCGGAGCACATACAGCTCTTCTACAGGCTGCTCACCATCTCGATGGAGACCACGCGATGCTGGGCTGACCGGCTGCCCGGGTTCTCCGAGCTTCCGCGTGACGATCAGAACCTGCTCATAGACTCTGCCTTTCTGGAGCTGTTTGTCCTGCGATTGGCTCACAGGTCGATGCTGTCAGAGGATAAATTAGTGTTCTGCAACGGCTTGGTGCTGCACAGGTTCCAGTGCCTTCGTGGGTTTGGGGAGTGGCTAGACTCCATCCGGGACTTCTCCACCCACCTCCAGAGCCTAAACCTGGACACCTCGGCCTTCGCCTGTCTGGCTGCCCTTGTACTGCTCACAGagcaagtcccaggtCTGAAGGACTCAAAGCGGGTTGAGGAGCTGCAGAATAAAGTGATTTGTTGTCTCAGAGACCACCTGGGTTGCGGCCCTTCTTCCTCCTCGTCCAAGGCTGTGCCCCCTCTGAGTCGTATTCTGGGTTTGAGGGCAGAGCTCCGTTCCCAGAGGACCCAGGGTCTTCAACGAATCTTCTACCTGAAGCTTGAGGATCTGGTACAGCCCCCTCCGTTGATTGACAGGTTCCTGGACACTCTTCCCTACTGACGGCCCAGGCTCAGCACATGTAACGTCTTGTTCAGCCCCCCCCCCAggagcatgcacacacatccaGAGAGAGACTTGCTCCCCACTGACTGATGCAGAGCAGAGAGCCAATCAAATGCTTTTCAACAGGGCAACCAATCAAGAGCGCCTTTCACTCAAACAGACAACCAACTAAACGCTTTTCACCAGTATAAAAGACAATTACTCAAATGCTTTACCAGTTTTTATTTGATCCTCCTGTTTTTCTCATGTGGGGGAGGATGACGAGGCTGAGATGGACGacaaaaaattactttttactgtcctctctctgtctgggtGGCAGCTCATCCAGCAAAAAATAAGGACAGTTTATGAGTACTGTGTTATCTGTGTTTTGGCCTGACTCATTCAGTCAGAGGAATTCTTTTTAGTAAAGAGAGAAGGGGTTGTGTCACTGTGTTTGAATGTTTTCAAAGCTAAAGATGTCCCAGTGAAACACAAGTCACTGTGTACTCTAGTTCCTTCTGCTGAAAGAAGAAAGGGGGCCcttttttattctgaaatgtattgatatgtcagaggtcagacAGCGTAAGCATAAACACGCAGAAACACAGATATTTCATGAACACATGGAAGTGGCTGTTGAGTTGGGCTCTTGATTCCAAGTGCAATTTCTTAAATGCTATCTCACCACAAAAGGAGGAGGCTGAGATGGAACGGTTTAATTTCAAACTCTAAACTATTTTAATACAAAGATTTGTCCTGTACAGTCAGTATAGCTGAAAGAAAGAGGGACAGTCTCCACCTGGCTTTAGAAAGCAGAGGAGATACTGTGCACTAACGATTGATGACTGAGTCACCTAGACTTGAACTTGCtctagtatgttttttttttattaactcaTTTTTAAATCTTAAGTAGGAGTATGGAGGAATGAACATTGACAGAAATTGGCTTTTGAAGCACTTACACCCTGAGAAGGGCTagaagcacagacacacaccctaACTGCTCCCCTGGAGGACGCCTGGGAGTCGGGGGAGCGGAGGGTGCTCGACAGATAGCTGTATGTCCAGGGGTGAAACATTCCGCAGTCATGTTCTTTTCTATTTGTTTCTATTGTGGAGGCCGTGTGAGAGTGTGGAGGACATGGTTGCAtactgtctttgtgtgtacGCTTAGAGAAGCCAGGATCATATGCATGGTGTGTTATAAGCTGTCAAAAGCTGCCATAGCCTGTCAAAACACCTcgatctgtgtttgtgtctcagaCTGCGGCTCTATGGGGATCTCCCTGGGCCACCACCACCCACTCACACTCACGGCAGCAGtttgaaatatgaaaaaaagcaaattatatagatataaatatatatataaatatatatatacaaaactaatattttgaagtgtttttagctttttcaaaTATTGTGGTACGAGTTGTGCATTGTTTTttgaagaagagaaacaaaaaagaaaaaaaagttgctgTTTTTcaatgtccctctttggtttgagtttcctgttatttttttctttctctttggtTCACTGGATTTTCTGTTCAGCACTTTGAAATCATAAACTAGTTCTGATTATTCTGCC
>XM_039806524.1
CCAGCCGCTCTATGTGGAGGCTCAGCCCACATAAATGCACTATTTGACTTTCTCCCCTCAGACGGCGCACATAAACAAACCCGCGTTACAACTCCACACTTTGCAAATCACCCATCAGCACTGACACACTCACGGGAACGGACTCAGACACGCTCCTTTATACACgggagttttttattttttaatgttctgtttcattttttttttactttttgttgccTACTTTAGAAAAAGTAAGAAGAAGAAGCTCTTTTGTCGCCGATGAACCCGGTTCCCCTGCAATATTACTGAGAGGTTTTTATAGACTATATAGGCTTATTCTCTCCATTAATTCGACTCTTGGTCATTATTCTGGACGGAAATGGGATATTTCATGCGAGGTTATTACCTCATGTAAAGACGGAACCGCTACAGCAAACCAACACAGGTTCGGAAGAGCGCGCCCAGCCGAGCTCGGAGCCCCGGCAATCGGACACTTCCTTTACGACGCCCGCCGAGTCCTCCTCGCTCCAGGAGCCCTGTCCCGGTCGCAGCCACGCCACCCCTCAATCCCGGACACTCAGCACCATTCAGCGCGAAGCTCTTTCACCAGatCTATGGCATTCTGACAATGAACAAACGCACTCAGTTATTGGAACAGCTGCAGTTTGTCCAGTTGAAATGCACACCTCGAGACATGCCCTGTGTGCAGGCTCAGTACGGGCCCGCCCCTCCAGGCTCAGCCTACTCTGGCCAGTCCTTTGGTTACCAGGGCGACAGCTATAGCTCTGACCTCATGACCCCTGACTACACCAAGCTGGACCTGGGTGGTGGTGAAATCTCTGCCGCCGCCACCACCTCCCTCCCCAGCTTCAACGTCTTTGTGGAGGGGAGCTACGAGCCCAAGTCCTCCTGCCTCTACCAGATGCCTACACACAGGCATAtcaaaaaggaggaggagagctaCCCAACTGCTCCGCCACTGGAGGCCATGGCCTCTTCCACCATGTACTTTAAACAGtctcccccctccacccccaccaCCCCATCCCTGCCGCcccagcctggcacctccttcCTGTGGGGGGGCGCGCACCCCCTGGCCCCTCCATCACACCCCCACTCTTTGGGCTCCAGCCTGGAGACGGGCCCCCTTAAGTCGCCCCGGTTTTCGCACTTCTACCAGCACTCGCCGCCCCACAGTGGCGGCAGCATCAGCGGTTACGAAAGTCTGGGTGGAGGACTGGTTcgcacctcctcctcttcctcctcctcctcatcctcggTCTCCCATCCTCACTGTCCACCCCTGGAGCAGCCCATGTACCAGCTGCACCGTGGGGCCGGAGGCAGCAGCCTCGCCTTCCGCTCCCTGGCTCTTGGGCCCTGCGGCCCCCTACTAGGAGACAGCCTGCCATCGCCTCCCCCACGTGGCCCCCAAGGAGAGGGCACCTGTGCGGTGTGTGGGGACAATGCGGCCTGCCAGCACTACGGCGTACGCACTTGTGAGGGCTGCAAGGGCTTCTTTAAGCGCACCGTGCAGAAAAACGCCAAGTATGTGTGCCTGGCCAGTAAGAACTGTCCTGTGGACAAGAGGAGACGCAACCGCTGCCAGTACTGCCGCTTTCAGAAGTGTCTGAGTGTCGGCATGGTGAAGGAAGTGGTACGTACTGATAGCTTGAAGGGGCGCCGAGGCCGTCTGCCTTCCAAACCAAAGAGCCCCCTGCAGACAGAAGCGTCTCCTCCTTCTCCACCCCTCAGCTTGCTCTCCGCTCTGCTCAGGGCTTATTCCCACTGCACGCCCCGTGACCTCGACTACAGCCAGTTCAGTGCTGCagaccctccctcctcctcctcagatgCGGAGCACATACAGCTCTTCTACAGGCTGCTCACCATCTCGATGGAGACCACGCGATGCTGGGCTGACCGGCTGCCCGGGTTCTCCGAGCTTCCGCGTGACGATCAGAACCTGCTCATAGACTCTGCCTTTCTGGAGCTGTTTGTCCTGCGATTGGCTCACAGGTCGATGCTGTCAGAGGATAAATTAGTGTTCTGCAACGGCTTGGTGCTGCACAGGTTCCAGTGCCTTCGTGGGTTTGGGGAGTGGCTAGACTCCATCCGGGACTTCTCCACCCACCTCCAGAGCCTAAACCTGGACACCTCGGCCTTCGCCTGTCTGGCTGCCCTTGTACTGCTCACAGagcaagtcccaggtCTGAAGGACTCAAAGCGGGTTGAGGAGCTGCAGAATAAAGTGATTTGTTGTCTCAGAGACCACCTGGGTTGCGGCCCTTCTTCCTCCTCGTCCAAGGCTGTGCCCCCTCTGAGTCGTATTCTGGGTTTGAGGGCAGAGCTCCGTTCCCAGAGGACCCAGGGTCTTCAACGAATCTTCTACCTGAAGCTTGAGGATCTGGTACAGCCCCCTCCGTTGATTGACAGGTTCCTGGACACTCTTCCCTACTGACGGCCCAGGCTCAGCACATGTAACGTCTTGTTCAGCCCCCCCCCCAggagcatgcacacacatccaGAGAGAGACTTGCTCCCCACTGACTGATGCAGAGCAGAGAGCCAATCAAATGCTTTTCAACAGGGCAACCAATCAAGAGCGCCTTTCACTCAAACAGACAACCAACTAAACGCTTTTCACCAGTATAAAAGACAATTACTCAAATGCTTTACCAGTTTTTATTTGATCCTCCTGTTTTTCTCATGTGGGGGAGGATGACGAGGCTGAGATGGACGacaaaaaattactttttactgtcctctctctgtctgggtGGCAGCTCATCCAGCAAAAAATAAGGACAGTTTATGAGTACTGTGTTATCTGTGTTTTGGCCTGACTCATTCAGTCAGAGGAATTCTTTTTAGTAAAGAGAGAAGGGGTTGTGTCACTGTGTTTGAATGTTTTCAAAGCTAAAGATGTCCCAGTGAAACACAAGTCACTGTGTACTCTAGTTCCTTCTGCTGAAAGAAGAAAGGGGGCCcttttttattctgaaatgtattgatatgtcagaggtcagacAGCGTAAGCATAAACACGCAGAAACACAGATATTTCATGAACACATGGAAGTGGCTGTTGAGTTGGGCTCTTGATTCCAAGTGCAATTTCTTAAATGCTATCTCACCACAAAAGGAGGAGGCTGAGATGGAACGGTTTAATTTCAAACTCTAAACTATTTTAATACAAAGATTTGTCCTGTACAGTCAGTATAGCTGAAAGAAAGAGGGACAGTCTCCACCTGGCTTTAGAAAGCAGAGGAGATACTGTGCACTAACGATTGATGACTGAGTCACCTAGACTTGAACTTGCtctagtatgttttttttttattaactcaTTTTTAAATCTTAAGTAGGAGTATGGAGGAATGAACATTGACAGAAATTGGCTTTTGAAGCACTTACACCCTGAGAAGGGCTagaagcacagacacacaccctaACTGCTCCCCTGGAGGACGCCTGGGAGTCGGGGGAGCGGAGGGTGCTCGACAGATAGCTGTATGTCCAGGGGTGAAACATTCCGCAGTCATGTTCTTTTCTATTTGTTTCTATTGTGGAGGCCGTGTGAGAGTGTGGAGGACATGGTTGCAtactgtctttgtgtgtacGCTTAGAGAAGCCAGGATCATATGCATGGTGTGTTATAAGCTGTCAAAAGCTGCCATAGCCTGTCAAAACACCTcgatctgtgtttgtgtctcagaCTGCGGCTCTATGGGGATCTCCCTGGGCCACCACCACCCACTCACACTCACGGCAGCAGtttgaaatatgaaaaaaagcaaattatatagatataaatatatatataaatatatatatacaaaactaatattttgaagtgtttttagctttttcaaaTATTGTGGTACGAGTTGTGCATTGTTTTttgaagaagagaaacaaaaaagaaaaaaaagttgctgTTTTTcaatgtccctctttggtttgagtttcctgttatttttttctttctctttggtTCACTGGATTTTCTGTTCAGCACTTTGAAATCATAAACTAGTTCTGATTATTCTGCC

Function

symbol description
nr4a3 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and glucocorticoid receptor binding activity. Acts upstream of or within neutrophil homeostasis. Predicted to be located in cytoplasm. Predicted to be part of transcription regulator complex. Predicted to be active in nucleus. Is expressed in basal plate midbrain region; brain; neurons; and spinal cord. Human ortholog(s) of this gene implicated in extraskeletal myxoid chondrosarcoma. Orthologous to human NR4A3 (nuclear receptor subfamily 4 group A member 3).

NR:

description
probable nuclear hormone receptor HR38 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039806523.1 False 3800 mRNA 0.52 8 21083513 21103601
XM_039806524.1 True 4040 mRNA 0.51 9 21080886 21103601

Neighbor

gene id symbol gene type direction distance location
LOC120562142 NA coding upstream 79244 21000271 ~ 21001642 (+)
galnt1 galnt1 coding upstream 120229 20903853 ~ 20960657 (+)
LOC120561989 atp4a coding upstream 439035 20631458 ~ 20641851 (+)
si:dkey-12j5.1 LOC103353891,LOC103388393,LOC103478624,LOC102212439,LOC102778746 coding upstream 605332 20448227 ~ 20475554 (+)
LOC120562868 LOC100690947,LOC102779295,LOC104968267,LOC102211038,LOC101468916 coding upstream 700803 20368104 ~ 20380083 (+)
stx17 stx17,LOC102795111 coding downstream 3237 21106838 ~ 21117093 (+)
invs LOC102794544 coding downstream 25749 21129350 ~ 21151513 (+)
si:ch211-197h24.6 NA coding downstream 58069 21161670 ~ 21167686 (+)
tmem67 tmem67 coding downstream 68922 21172523 ~ 21183348 (+)
pdp1 pdp1 coding downstream 80350 21183951 ~ 21190820 (+)
G74207 NA non-coding upstream 186944 20893139 ~ 20893942 (+)
G74208 NA non-coding upstream 188231 20891684 ~ 20892655 (+)
G74205 NA non-coding upstream 239117 20840560 ~ 20841769 (+)
G74204 scrt1,LOC108241025,LOC103140879,LOC105929800,LOC103353874,LOC102233766 non-coding upstream 244138 20832323 ~ 20836748 (+)
G74145 nacad,LOC104951159 non-coding upstream 466179 20607340 ~ 20614707 (+)
G74233 NA non-coding downstream 46788 21150389 ~ 21152512 (+)
G74274 kiaa1429,LOC104941925 non-coding downstream 139628 21243229 ~ 21243567 (+)
G74286 NA non-coding downstream 185570 21289171 ~ 21289375 (+)
G74287 NA non-coding downstream 185952 21289553 ~ 21290314 (+)
G74288 NA non-coding downstream 187441 21291042 ~ 21292380 (+)
sec61b sec61b,LOC102796100 other upstream 69472 21008013 ~ 21011414 (+)
glipr2l glipr2 other upstream 475721 20600323 ~ 20605165 (+)
gra NA other upstream 754925 20322330 ~ 20325961 (+)
si:ch211-257p13.3 kifc3,LOC102783047 other upstream 853895 20214588 ~ 20226991 (+)
LOC120561838 tppp other upstream 871559 20192690 ~ 20209327 (+)
LOC120563169 NA other downstream 227811 21331412 ~ 21336665 (+)
crot acbd7,crot,LOC102783617,LOC101470173 other downstream 299434 21403035 ~ 21415894 (+)
them4 LOC106592246,LOC104959154,LOC101466288,LOC107096308,LOC100702377,LOC105029233,LOC106575342 other downstream 495433 21599034 ~ 21603458 (+)
G74633 tuft1,LOC102781808 other downstream 665947 21769548 ~ 21770286 (+)
slc50a1 slc50a1 other downstream 980068 22083669 ~ 22091963 (+)

Expression


Co-expression Network