zgc:113232 (LOC103366216)


Basic Information

Item Value
gene id zgc:113232
gene name LOC103366216
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 35129114 ~ 35168180 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039806533.1
TTCAACATCTTTTGTCTAACCAAGAGTCCAAAAATCTAAGATATTCTGTTTTCCCGTAATGTCAAGAGTTAGTAAaactgcaagttctcacattttAGGAGTTGGAACCATCAAatgtttagcattttttttgCTCAAAAGATTACTTAAAAGATTcatcgattattaaaatagttgcttAAATGTTCTGTTGATCAACTTatagttgcagctctagttcAGATCAGTGTGGAGTTTAGCCTAGCTCATTTAAATTAAGTCTAATTTAATTCTTTCATCACTGTACAGTTTTAGTTCATTCTATTTTTCAGattatttcattcaatatattttttaaagtccTCTGTttggggtggcctctagctcacctagtaagagcgtgcgccccatgtaggccttggcctgggttcgaatccaacctgtACCCCTTTACTGTGTCGTCCCAtctctttcctgtctatccactgtcattaCAGAATCAAAGGAAAACCCCCAGACAATAAtcttaaagaaaagaaagccctatgttaaaaaagtttgggatttttcagaaaacaaaacCTTTTTGTATCCTGATGTTGACAAAGATTACTTCTTCTGATATAATGAAGGTTACTGTGACAAGATAAAAACGTATTGTTCAGTATAGAAATTGGGCTGCGTTGCCATTTTGAGCTGAAGATAAAGTGTTTGCTGCCTCTTGCAAAAGTGTAAAGTGTTGACGTGTTACAAGTTGACTTTTTGGCATGAAGATTATGGTTTGTTGGCAGGATATCTCATAAACCACTAAACAGTTTTCAGTGAAATGTGGTGGCAAGTTGTAAGCAAAAGAGTTCATTTGTGGTGGAGATTTCagatattaaaatgtgaaaagaatAATGTAGGTTAAAAGTTAAGACTTTGCTGGCATGAATTTTCTGCGAAAATCCATccatctctttttctccctgtgTGTTCTCTGCCGATGCTGTATTCTGGCTCAGGTATTTCTCACCCTGTTGAGGCACAGAGATAGacgacaagaagaagaagaagaaaaaaagtcggAGAGGATCCCGTCAGTGCCTGGGAACCTGAGGGATcctggagagacagagaggggacagAGACAGGACAGGGGGAACCATCGGGGTGATAATTCTGTGAGGAGAGCTGCTCAGGGAAAGCTAAATCAGGTCGTTTCTTTATCCTCGTCTGTATCCTGAAAGAGTCCTGTGCAGGATCTGGTCTGGTCTGAGGGGACTGCAGCACCATGGGAGCCTCCAGCGACAAGGCGTCTCTCCTCTCAGGGCTGCTTGTGTTCTTGCTCTGTGTCGTCTCTTCTCTCTGCCAGGATGAATATTCTGGATACCACTCAGGTGAGGAACACACCTATGAAGGCTCCATGGTCGACCGCTTCGACAACTCAGCCTCTCCTCAACCAGAGTATCCACCTGAGCCGACTCACAGCTACGACGAGGACCAACGGCCCGAGGAGGAGGACTACGACCCGTACGGCGCTGAACCCACACAGGTCACCATGATGACCGAGGACGCCTTCCCCTACGCCACCACTGCCGAGTCCCACTACGCCAAAGAAGACACAGAGACCATGCAGGTCCCATATAAGTATCGTCCAGCGAGACCAGACACCGACTCCTCCTCGGAGGAGGAGTCCGGGGGCGACGCAGCGCTTGGGGAGGAGGGGCCGACGGAGTGCGACTGTGAACCCGGACAGCCTGGATTCGCTGGCTTCGCAGGACCAAAGGGATCCAGAGGTCTGCAGGGTAAAACTGGTGAGCCAGGAGTTCAGGGCAGAGAGGGTTATAAAGGAACCAAAGGGGTTCGGGGAAAAGGAGGAGACACGGGACCAGTGGGCGACGCCGGACCTGAGGGAGATGACGGAGCTTCTGGTTTCTCTGGAGCCATGGGAGAACCCGGACTTATAGGAGACCCAGGCGAGCATGGAGAGTTTGGTCTGAAGGGTGACGCCGGGATGGAGGGACCCCGCGGAGGAGTCGGAGGTCCGGGTGAGACTGGCCCTCGTGGTGACGTTGGGTCTTCAGGACCAAAGGGCGGTAAAGGCATAAAGGGGTCTCTCGGTGATGAAGGCAAAGAGGGGGCTCAGGGACGAGACGGACAGAAGGGTCAGATCGGCGCTCCCGGGTTTCCAGGCGACGTCGGCGACAGGGGATACACTGGTTATCCTGGACAGCAGGGACCCATCGGACCCACTGGACCAAAGgGCACTCAAGGTCTAGGTGGCCTGCCGGGCAGCGACGGTGACCCCGGAGAAGATGGTCCTATAGGAGTCCCGGGTGTAATGGGAGACCCTGGACTGTTTGGAGCCAAGGGCCAGAAGGGGGATCGGGGTGTGAAAGGACCCCGAGGCCGAGTGGGCACTGTGGGAGCTGGAGGAGAGCAAGGAGATGCCGGAGTACCAGGGAAACTAGGACCCAAGGGCCTGCAGGGCCATCCTGGGGCCAAAGGTGAGACAGGACCTGATGGTGACAAGGGCGCGGCAGGAAAGAAGGGCATTAAAGGTGTGAAAGGACAAAAGGGCGGCAGGGGAGACCTTGGAGACAAAGGACAGCATGGTCCCAAAGGTGCAGTCGGTCGTACTGGCGGTCCCGGCCCCGAGGGACCGCCCGGCATCCCGGGTACCAGAGGAGAGCGCGGTGCGATCGGGGACCTCGGTGTTAAAGGCAAAGCAGGACCCAAAGGTGTTCCAGGTCCCACTGGTCCTGGTCTGACTGATGAGCAGGTCCTGCAGCTCTGCAGGGGCGTAGTCACGGCCCAGATCTCTCAGTATGCCTCCTCCATCCGGGCCAAGTGCTCCCAGGGCTGCCCCGTCAACAACCGGACCCTCATCGGGCCTCCGGGGGGCCCTGGGCCGACGGGGTCACTGGGCAAACCTGGTAAACCAGGAAAAGCCGGAGCAAAAGGAGCCCGAGGACCTCAAGGAGACCGCGGACTGGAGGGACAGAAAGGAGCGCAGGGTGACCAAGGTAAAAAGGGACCTAAAGGCCTCGCAGGTGATCCAGGTGAAGGTCTGGCGGGACCTGACGGGCCACAAGGCGCCAGAGGTCTGCCAGGTCACCCAGCAGAACCCAAAGATGGCATGGAGGGTCCCAGAGGTCCCCGTGGCTTCCCTGGTCCAGTTGGTCAGACCGGCATGCTCGGGAACGCAGGCGTGCCAGGATTTTGCGAGGCGCGGGACTGCAGCATCCATGCGCCGGTGACGCGCAAAGAGCAGGGTCTGGTGAAAGGACCCGTAAGTTCAAAAATGTGAACCTGAACGCGAGCGACGAGCACCGCTGTGAGATTATAGAGCGTCTGAAATTCCCCTGGTGGCAACTTTAAGGTTCGTCTCATTGAATAAGATTAAGacaatagtttgtttaaaagATGCGAATGATCCTCTCGTTCATCGCAAATGTCAGGGGACCAAGTGTAGTACCCTGGGGCGCTCCGCTGGTGGGCAGGTTTGGtaagaaacaggaaacagagcaggAATGAAACCAGAAAAGACTTTTCCATCTGAGCCAGACGAAGATTTTAGAGGTTTTTATATACTCTATAAAGATCCAAACACTGTTACAGCGTTGGACAGGAACAATGACGTCTGAGGGGGTTTGTTTAGTTTGATAAAGACACCAAATTATTCCCCACCGATTCCTTCCTCCcttctgtttattttttattttttcctggaTCCCTAAAGTCagttttgttgtttaaaaataaacaaaaataaaaataaaaaaagctatgtaaatattttgtaaagtatctcAAATACATGTACTGTGCTCTGGAATATGTTTCAGATAAACtgtctgatgtttttttaatctgagTCTTCAGTTTGTCAGTCGCCGCATGTTTAAATGTTGTGCTTTTATTTCTGACAAAAAAAGTATTCCAGAAAAGATAAATCACAGAAATGTCTCGGTTccagactttttttcttcttccagatTACTTTTTAGCAATTCAACCAGAAATGAAAAACTAAACAACAATTCATTGTGATTATCAGGCTTTTACAGTAAAGCACTAATCTGA

Function

NR:

description
PREDICTED: collagen alpha-1(I) chain-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039806533.1 True 4047 mRNA 0.50 26 35129114 35168180

Neighbor

gene id symbol gene type direction distance location
snrnp48 snrnp48 coding upstream 1403 35119433 ~ 35127711 (+)
LOC120563199 NA coding upstream 57724 35059459 ~ 35071390 (+)
rrnad1 rrnad1 coding upstream 70751 35043221 ~ 35058363 (+)
hapln2 hapln2,LOC102779935 coding upstream 164316 34952052 ~ 34964798 (+)
nes NA coding upstream 506531 34609910 ~ 34622583 (+)
cd83 NA coding downstream 9228 35177408 ~ 35183557 (+)
trnas-aga_7 NA coding downstream 19938 35188118 ~ 35188199 (+)
c7h8orf37 csgr05h8orf37,LOC103366206 coding downstream 20503 35188683 ~ 35201394 (+)
wdr73 csgr05h8orf37 coding downstream 39967 35208147 ~ 35230312 (+)
LOC120561699 LOC102800167,LOC102194503,LOC101481262,LOC104936483,LOC103358273 coding downstream 189074 35357254 ~ 35362521 (+)
G78440 NA non-coding upstream 97979 35030908 ~ 35031135 (+)
G78366 NA non-coding upstream 211045 34914357 ~ 34918069 (+)
G78219 NA non-coding upstream 470963 34634755 ~ 34658151 (+)
LOC120561766 NA non-coding upstream 623757 34502873 ~ 34505357 (+)
G78195 NA non-coding upstream 659657 34468906 ~ 34469457 (+)
G78488 NA non-coding downstream 732 35168912 ~ 35173203 (+)
G78516 NA non-coding downstream 38751 35206931 ~ 35207166 (+)
G78518 NA non-coding downstream 62271 35230451 ~ 35230899 (+)
G78519 NA non-coding downstream 63966 35232146 ~ 35232446 (+)
G78524 NA non-coding downstream 71857 35240037 ~ 35240487 (+)
LOC120562567 NA other upstream 272582 34839157 ~ 34856532 (+)
G78200 NA other upstream 584735 34529355 ~ 34544379 (+)
sh3bp5b sh3bp5,LOC102783023 other upstream 1086466 33990542 ~ 34042648 (+)
LOC120562157 NA other upstream 1224829 33894360 ~ 33904285 (+)
bmper bmper other upstream 1249982 33826087 ~ 33879132 (+)
G78594 NA other downstream 237195 35405375 ~ 35408682 (+)
LOC120562275 NA other downstream 575115 35743295 ~ 35773988 (+)
LOC120562279 NA other downstream 697662 35865842 ~ 35888172 (+)
G78759 NA other downstream 942671 36110851 ~ 36190839 (+)
G78772 NA other downstream 1089980 36258160 ~ 36350995 (+)

Expression


Co-expression Network