snrnp48 (snrnp48)


Basic Information

Item Value
gene id snrnp48
gene name snrnp48
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 35119433 ~ 35127711 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039806534.1
GCGCCAACGCCCCGTGACACGTCATAACCTCGCGCAGAACATGGCTACCGCAAGTGCAGCGAAAACACAACACCGATGATTTTGGGACAAATTATCATctaattttgacttaaaaccTCACAATGTCCGACTCATTGAAAACACAGACTCTTCAGGATCGACTGGACCGTCTACAGGAGCTGACAGAGTTCACAGAGAACTGCAAAAAGCAGCTAAACGATATCTTTGAAACGCTGGGATGGTCGCTCGACGACTCCAACCAGGAAGCAATGGAGCAGTGTCCCTACGACCCCAACCACAGAGTCCCGGTGAGGAGCATGGAGAAACACAAAGCCTCCTGCCGCCTCCGAAAGTTGGGCTACTCCGCTGAGGAGGAGGCGGAGATGTTCGACCCTTCTGTGTGTTATGAGAACAGCAGTGTCAGAAGCTTCACGATGGACAAATCCACCCAGCACCAGGTGATCCTGCAGGCGAGGTCTGCTGCACCGCTGATGAGGATGGAGGGAGTCTTCTGGCAAGGTCAGTACACAGGCCAGCCCGTCGACGTACCTGAGAACCACAAGCGCGCGGTGTGTGACCTCACTGTGGCCGACCGACTTGCTCTGTACGATCATGTGGTCGGCGTCCTCAACCAGCAGACGGAAGCGGCCTCCTCCAGCAACGACGATCTCTACGTAGACTTGGTGTCCAAACTCCAGAAGGatgAACAACAGAACGAACCAAAGACTCACCTGGAGCTGATGGCAGAGATGAGGGACTACAAGAGGCGGCGTCAGTCTTACCGAGCCAAGAACGTTCACATCACCAAGAAGTCCTACACCGAGGTGATCAGAGAGGTGATCAACGTCCACTCAGAGGAGCTCAGCAGACagtggagagaagaggaggacgaATCGACGAGATCTGAACTCTCCTCCCAAAGGCGTCGGCTGGATGAGAGGCGGTCGCTGTCGTCAGAGTCTCGCCACTCCCACAGCAGACGCCATCGCAGCCGAGAGCGaagcaaagacagagagagcaagaagaagaggaagaagagggagagGGATTCCCGTTCTCCTGATGACCACCACCACGAccgcaagaagaagaaaaagaaaaagaaagaggagagggagaagtgCTAGTGCTGGATCAGCAACAACAGATCAGATGAGGTCAAAGGTCATTGTGGCTCCTACGGGTCAGAAGATGTCAGGTGTCACAACATTTTAAGATTATAAACAAGGGGAGATAAATAAATGGGAATAAAGTTTTGGGAACCAGCAACATCAA

Function

symbol description
snrnp48 Predicted to enable metal ion binding activity. Predicted to be part of U12-type spliceosomal complex. Predicted to be active in cytosol and nucleoplasm. Orthologous to human SNRNP48 (small nuclear ribonucleoprotein U11/U12 subunit 48).

NR:

description
uncharacterized protein LOC109901926 isoform X2

GO: NA

KEGG:

id description
K13156 SNRNP48; U11/U12 small nuclear ribonucleoprotein 48 kDa protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039806534.1 True 1275 mRNA 0.53 9 35119433 35127711

Neighbor

gene id symbol gene type direction distance location
LOC120563199 NA coding upstream 48043 35059459 ~ 35071390 (+)
rrnad1 rrnad1 coding upstream 61070 35043221 ~ 35058363 (+)
hapln2 hapln2,LOC102779935 coding upstream 154635 34952052 ~ 34964798 (+)
nes NA coding upstream 496850 34609910 ~ 34622583 (+)
LOC120561733 NA coding upstream 678340 34419907 ~ 34441093 (+)
zgc:113232 LOC103366216 coding downstream 1403 35129114 ~ 35168180 (+)
cd83 NA coding downstream 49697 35177408 ~ 35183557 (+)
trnas-aga_7 NA coding downstream 60407 35188118 ~ 35188199 (+)
c7h8orf37 csgr05h8orf37,LOC103366206 coding downstream 60972 35188683 ~ 35201394 (+)
wdr73 csgr05h8orf37 coding downstream 80436 35208147 ~ 35230312 (+)
G78440 NA non-coding upstream 88298 35030908 ~ 35031135 (+)
G78366 NA non-coding upstream 201364 34914357 ~ 34918069 (+)
G78219 NA non-coding upstream 461282 34634755 ~ 34658151 (+)
LOC120561766 NA non-coding upstream 614076 34502873 ~ 34505357 (+)
G78195 NA non-coding upstream 649976 34468906 ~ 34469457 (+)
G78488 NA non-coding downstream 41201 35168912 ~ 35173203 (+)
G78516 NA non-coding downstream 79220 35206931 ~ 35207166 (+)
G78518 NA non-coding downstream 102740 35230451 ~ 35230899 (+)
G78519 NA non-coding downstream 104435 35232146 ~ 35232446 (+)
G78524 NA non-coding downstream 112326 35240037 ~ 35240487 (+)
LOC120562567 NA other upstream 262901 34839157 ~ 34856532 (+)
G78200 NA other upstream 575054 34529355 ~ 34544379 (+)
sh3bp5b sh3bp5,LOC102783023 other upstream 1076785 33990542 ~ 34042648 (+)
LOC120562157 NA other upstream 1215148 33894360 ~ 33904285 (+)
bmper bmper other upstream 1240301 33826087 ~ 33879132 (+)
G78594 NA other downstream 277664 35405375 ~ 35408682 (+)
LOC120562275 NA other downstream 615584 35743295 ~ 35773988 (+)
LOC120562279 NA other downstream 738131 35865842 ~ 35888172 (+)
G78759 NA other downstream 983140 36110851 ~ 36190839 (+)
G78772 NA other downstream 1130449 36258160 ~ 36350995 (+)

Expression


Co-expression Network