hoxa9b (hoxa9,LOC104927766,LOC104949899,LOC103364041)


Basic Information

Item Value
gene id hoxa9b
gene name hoxa9,LOC104927766,LOC104949899,LOC103364041
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 19869180 ~ 19870738 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039806535.1
TCGATTACACCAACGTAAGATCTCTTGACGAAAATCATAATGTTTATTGCTTATAAAACGAAATATTTCCTAATAAAGGCGCGGAGACTTGCTATTAAAATATGGTGGGGAAAATGGTGGCCATTTAGTTGAGCAGCaggctgatttattttttattgttctgtCCCACGGTCACGTGTTTGGGGCGCCCTATCCAAAGGTTCAACTTACTGGACGCATTGAGCCCCTAGCTGGTGCAGGAAAGCAGCACATTATATGCCATGAATCTGTTTTTTCTAAACATTGCAAGACTGAACCGCGTTatatagcctttttttttttttttttgcttttgcatTTTTTGCAATGTCGGCATTGGGAACAAGTTATTATGTTGAGTCGCCTGTTCTTCCCGAGCAGGAAGATATGGCACCGAGGTACTCGTCAGCTGCAGGGGTGGAGCAGGCGATGCTCACCGAATATGGCGGACAGGAATCTTGCAATTTGCAGGCGAAATCTTCTATTTTTGGTGGATCTTGGAGTCCCATCTCGTCCCATCCTCCGAACACAGTCACTCCGACCTATATACATCACCATTACACGAGCGGGGACAGCGATGGCATGTTTACGCGCTCCTGGGCGTTGGATCCGGTCTCTGCGTCCCTGTGTTTGACGGGCTTACCATCGACAGCCATGCATTATGAGATCAAACCCGAGCCTCTGATTGGGAGTGCTGAATGTACAACTTTGGAGACGCACACACCTCTTTTGTCTGACATTGAAAACGGTGCGTCCCTTGCGGAGATTTCCTGCGAAACCACATCCACGTCTAAAGCCACTGAAGAGAGTCCGTCAGCAGAGGACAAGAGGGAGATAGATGCAAATAACCCATCATCCAACTGGCTTCACGCAAAGCCCACCAGAAAAAAGCGTTGTCCATATACAAAGCATCAAATCCTCGAACTGGAAAAGGAGTTTCTGTTTAACATGTACCTTCCCCGGGATCGTAGATACGAAGTAGCAAGAGTCCTGAGTTTGACCGAGAGACAGGTGAAAATCTGGTTTCAGAACCGCAGGATGAagatgaagaaagaaaacaaagaccGGCGGAGAGACAGTTAACTGGTTTTGGACTGATGGTGAATTAGAAGGG

Function

symbol description
hoxa9 Enables enzyme binding activity and sequence-specific double-stranded DNA binding activity. Involved in endothelial cell activation. Located in nucleoplasm.

NR:

description
homeobox protein Hox-A9b-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09300 ABDB; homeobox protein abdominal-B and related proteins

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039806535.1 True 1132 mRNA 0.46 2 19869180 19870738

Neighbor

gene id symbol gene type direction distance location
hoxa10b hoxa10,LOC103364043,LOC104927764,LOC100692649 coding upstream 1579 19865155 ~ 19867601 (+)
hoxa11b LOC102793196,LOC102195329,LOC104949897,LOC101079822,LOC103364044 coding upstream 7905 19859104 ~ 19861275 (+)
hoxa13b LOC103364045,LOC102793494,LOC100691939,LOC104927762,LOC104949896 coding upstream 15592 19851243 ~ 19853588 (+)
hibadhb hibadh,LOC104927761,LOC100691671,LOC101485952,LOC102793794,LOC102194756,LOC105926386,LOC103478572 coding upstream 21778 19838549 ~ 19847402 (+)
jazf1b jazf1,LOC104949891 coding upstream 50160 19806778 ~ 19819020 (+)
hoxa2b LOC100534423,LOC102306217,LOC102196176,LOC102792302 coding downstream 6139 19876877 ~ 19878668 (+)
skap2 NA coding downstream 11139 19881877 ~ 19891979 (+)
LOC120561951 NA coding downstream 72249 19942987 ~ 19945175 (+)
osbpl3b osbpl3,LOC102198167 coding downstream 76718 19947456 ~ 19976994 (+)
gsdmeb NA coding downstream 108019 19978757 ~ 19988747 (+)
G73836 NA non-coding upstream 48589 19820235 ~ 19820591 (+)
G73776 hdac9 non-coding upstream 229721 19634873 ~ 19639459 (+)
LOC120562701 NA non-coding upstream 243569 19614503 ~ 19625611 (+)
LOC120562732 NA non-coding upstream 412564 19453769 ~ 19456616 (+)
G73606 NA non-coding upstream 549132 19319438 ~ 19320048 (+)
G73871 NA non-coding downstream 148371 20019109 ~ 20052006 (+)
G73881 NA non-coding downstream 170133 20040871 ~ 20046380 (+)
G74067 NA non-coding downstream 443746 20314484 ~ 20318117 (+)
G74081 NA non-coding downstream 469603 20340341 ~ 20340927 (+)
G74091 NA non-coding downstream 532085 20402823 ~ 20423897 (+)
G73779 hdac9 other upstream 219669 19646975 ~ 19649511 (+)
si:ch211-254p10.2 LOC102209663,LOC101158134,LOC102295699,LOC101064473 other upstream 415897 19447167 ~ 19453283 (+)
hcst LOC104925504,LOC104961397 other upstream 677078 19190020 ~ 19192102 (+)
G73570 LOC103371659 other upstream 710185 19148613 ~ 19158995 (+)
kmt2bb kmt2b other upstream 1007222 18833245 ~ 18861958 (+)
LOC120561838 tppp other downstream 321952 20192690 ~ 20209327 (+)
si:ch211-257p13.3 kifc3,LOC102783047 other downstream 343850 20214588 ~ 20226991 (+)
gra NA other downstream 451592 20322330 ~ 20325961 (+)
glipr2l glipr2 other downstream 729585 20600323 ~ 20605165 (+)
sec61b sec61b,LOC102796100 other downstream 1137275 21008013 ~ 21011414 (+)

Expression


Co-expression Network