LOC120562688 (tnfrsf11b,LOC103369092)


Basic Information

Item Value
gene id LOC120562688
gene name tnfrsf11b,LOC103369092
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 16632876 ~ 16718524 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039806536.1
ctctctctctctctgtagctACTGTATAAGTACAGATCTGTGATGGAGACCCCATCACACCGCAGTTCACTTTTACGCAGTGGAGATGAGCGCTCGGATAGCGAAATCCAACCCGGCCATGAAACTGATAGTGctcttcacagcttctctttcCTGGGCCTTCCAGCAGCAGGCCGTACCGCCAAAGTACCAGTACCGCGATCCCGTGACATCTGACCTCCTGCTGTGCGACCAGTGCCCTCCTGGCACAGCAGTGAAGCGACACTGCACCGCTGCCGCACCCACAGAGTGCCAGGCCTGTCCTGAGAGGCATTTTGCTGAGAACTGGCACTGGGGGGATACGTGCCAATACTGCACCTCGgttTGCAAAGAGAGACAGCTTGTGAAGCAGCAGTGCAACAGCACTCACGACCAGCTGTGTGAGTGCGCTCCAGGTTTCCACCTAGTGGTGGAGTTCTGCATCACACACAGTACCTGTCCACCTGGCTATGGAGTGACAGCTTTAGGTACACCGGTCAGTGACACAGTGTGTGAACGTTGTCCCGCTGGTCATTTCTCCAGCGGCGACTCCACCACTGAGCCATGTCAGCCCCTCAGAAACTGCTCCGATTTGGGCTTGAAGACACTGAGATGGGGCACGTCCACCTCAGACAGCCTCTGCGGCACTCAGGACAAGACGGCAATGCTGGATTGTGCTCAGCCTCACACTTTGTGCCACACTGACGTGACCTTGTGTGAGGAGGCAGTCTTCCAGTCTCTTTCCTCCCTGCGACTGTCCTCGGTGCCCCTGGAGCAGCTGTTAGAGAGTCTCCCCGGGCGTAGTGTGGATCGTAAGAGCCTGGAGAGACTGAAAAAGGCCTGCTCTCCCCAGCAGCAGGTCCTCCAGCTGCTGCGACTGTGGAGGGAGCAGAACAAAGACCAGGACAAGATGTACAGCATCAtacaagGTGTGAACCACTGTGAGAGGAAAGTCTCTCGCTGCAACGGCCTAAAAAACCTGACCCTAGGTGATCTCCTGAAGGTAACTAACAGCCTGCCGGGGGTCAGAGTTCAGCAGGAGGATGTCCGGGCCGTGGTCTCTACTTGCCTGCCCAGGCAGTACATCCTGCAGCTTCTTCACCTCTGGAAGACTGCAAACTATGACCTGGATCTAGCCAAAGGCCTGTCTCACAGTCTGAGGGTGCTACGCAGCCAGGGGGCGCCACGCCATCTGCTGAAAGTCTTGAAGAAGATCAGCCGCATCATAGGAACCACCTCAGCGCACAAGATATATGAGAAGATGTTTGTCAGCGTGCTTCACGATGAGTCCTGTTTTAAGGCTCATAAGCCATTAAATGAATAGGGATTTGGGAGGTTCAAATAGGAACATATGGTATCTATAGCATAAACAGACACTAATGCATTGTCAGAtaaagaacacacaaacacataaagacacacccTTAGTGGAGAAATGTATCTGAAAGAGTAACAGACATTTAAGATATCACCAAATGACATCAAGCTATGCATAAAGTGCCTAACTGTAACACAGGGGCATGATGGGAGGGTAGATTTGTCGCTGTTTCTCTGATTTTCCAGCCAAACCCTCTGCCAAAATAAGGCTGTTTTGATTATATGAGGTAACAGGGGATGCTAATAATTCCACCCTCAgtctacagtatgtgtctgCAGTGATTAATCTAATAAGcctcaaaagaaagaaagaaaaactatCACACATCTCTGTACTCCAGGCaggctgaaaaagaaaaaaaggtttccTGGGAACTTTATGACCGGAGtctgtgaaaaatgaaaaactatTTAAGATGTAAATAGCACACTATTTTATGAAAGATAGGCAGGCAGATGTTgcgttttttattattatgcttTCTCGCTGATTAAGAGGAAGGATTTGGTTTCATAATGAAATACATGTATTTCCTACAGTTTCcctttgtttgttggtttgttctGGACTGCTGGCAAGTAAAGCGCATCTGAATTATTGTTAAATTGTCAGCTATATGAATGTACAAAGGAGTGCAATTgttttctatttaaaaaaataattctacTTTCTGAATATGtaaaggcttgttttttttattactatcaGAAATACTGGATTCCAAATGCTGCAAGTTTGTGAAGtgatatttgttttatattttgttttatcacttttatatTATTAAATGTACGATCTTTTTGTATATATGCTTGACTGGTCCTCTTTAAGCTCGAATAACTTGTGAACACTAAGTCAATTTATCTGATTAAAATCagtttgtaaaaa
>XM_039806537.1
CAAATGACGCAAGGGCCCCGCCTCCCCCTCGTGTGTCATGTTTACAACTTCGATGAGGAAGATGAAGCGGAACTATTCTTCTAGTCAcgcaaatagaaaaaaaacacagcaatcAGGCCCCATCTTTCCTGTGTGGCCCACATCGCCTTCAAGCCCCATCTCTCCTGACACTCCtggggaagaagagaaagaaacacagaGGATGAGAGGAGGGGAGAGCGAGGATGAAGAATATATGGAGAAGATTTGAGctcttcacagcttctctttcCTGGGCCTTCCAGCAGCAGGCCGTACCGCCAAAGTACCAGTACCGCGATCCCGTGACATCTGACCTCCTGCTGTGCGACCAGTGCCCTCCTGGCACAGCAGTGAAGCGACACTGCACCGCTGCCGCACCCACAGAGTGCCAGGCCTGTCCTGAGAGGCATTTTGCTGAGAACTGGCACTGGGGGGATACGTGCCAATACTGCACCTCGgttTGCAAAGAGAGACAGCTTGTGAAGCAGCAGTGCAACAGCACTCACGACCAGCTGTGTGAGTGCGCTCCAGGTTTCCACCTAGTGGTGGAGTTCTGCATCACACACAGTACCTGTCCACCTGGCTATGGAGTGACAGCTTTAGGTACACCGGTCAGTGACACAGTGTGTGAACGTTGTCCCGCTGGTCATTTCTCCAGCGGCGACTCCACCACTGAGCCATGTCAGCCCCTCAGAAACTGCTCCGATTTGGGCTTGAAGACACTGAGATGGGGCACGTCCACCTCAGACAGCCTCTGCGGCACTCAGGACAAGACGGCAATGCTGGATTGTGCTCAGCCTCACACTTTGTGCCACACTGACGTGACCTTGTGTGAGGAGGCAGTCTTCCAGTCTCTTTCCTCCCTGCGACTGTCCTCGGTGCCCCTGGAGCAGCTGTTAGAGAGTCTCCCCGGGCGTAGTGTGGATCGTAAGAGCCTGGAGAGACTGAAAAAGGCCTGCTCTCCCCAGCAGCAGGTCCTCCAGCTGCTGCGACTGTGGAGGGAGCAGAACAAAGACCAGGACAAGATGTACAGCATCAtacaagGTGTGAACCACTGTGAGAGGAAAGTCTCTCGCTGCAACGGCCTAAAAAACCTGACCCTAGGTGATCTCCTGAAGGTAACTAACAGCCTGCCGGGGGTCAGAGTTCAGCAGGAGGATGTCCGGGCCGTGGTCTCTACTTGCCTGCCCAGGCAGTACATCCTGCAGCTTCTTCACCTCTGGAAGACTGCAAACTATGACCTGGATCTAGCCAAAGGCCTGTCTCACAGTCTGAGGGTGCTACGCAGCCAGGGGGCGCCACGCCATCTGCTGAAAGTCTTGAAGAAGATCAGCCGCATCATAGGAACCACCTCAGCGCACAAGATATATGAGAAGATGTTTGTCAGCGTGCTTCACGATGAGTCCTGTTTTAAGGCTCATAAGCCATTAAATGAATAGGGATTTGGGAGGTTCAAATAGGAACATATGGTATCTATAGCATAAACAGACACTAATGCATTGTCAGAtaaagaacacacaaacacataaagacacacccTTAGTGGAGAAATGTATCTGAAAGAGTAACAGACATTTAAGATATCACCAAATGACATCAAGCTATGCATAAAGTGCCTAACTGTAACACAGGGGCATGATGGGAGGGTAGATTTGTCGCTGTTTCTCTGATTTTCCAGCCAAACCCTCTGCCAAAATAAGGCTGTTTTGATTATATGAGGTAACAGGGGATGCTAATAATTCCACCCTCAgtctacagtatgtgtctgCAGTGATTAATCTAATAAGcctcaaaagaaagaaagaaaaactatCACACATCTCTGTACTCCAGGCaggctgaaaaagaaaaaaaggtttccTGGGAACTTTATGACCGGAGtctgtgaaaaatgaaaaactatTTAAGATGTAAATAGCACACTATTTTATGAAAGATAGGCAGGCAGATGTTgcgttttttattattatgcttTCTCGCTGATTAAGAGGAAGGATTTGGTTTCATAATGAAATACATGTATTTCCTACAGTTTCcctttgtttgttggtttgttctGGACTGCTGGCAAGTAAAGCGCATCTGAATTATTGTTAAATTGTCAGCTATATGAATGTACAAAGGAGTGCAATTgttttctatttaaaaaaataattctacTTTCTGAATATGtaaaggcttgttttttttattactatcaGAAATACTGGATTCCAAATGCTGCAAGTTTGTGAAGtgatatttgttttatattttgttttatcacttttatatTATTAAATGTACGATCTTTTTGTATATATGCTTGACTGGTCCTCTTTAAGCTCGAATAACTTGTGAACACTAAGTCAATTTATCTGATTAAAATCagtttgtaaaaa
>XM_039806538.1
ATGACGCAAGGGCCCCGCCTCCCCCTCGTGTGTCATGTTTACAACTTCGATGAGGAAGATGAAGCGGAACTATTCTTCTAGTCAcgcaaatagaaaaaaaacacagcaatcAGGTGTTTTATGAGCTACAGGCGCTCATGATCAAGGGAAATCCAAACCTGTGACCTCACTCTTTTGCCTGAGATGCTGATGCATAGCTACTTTCCTGCCCCATCTTTCCTGTGTGGCCCACATCGCCTTCAAGCCCCATCTCTCCTGACACTCCtggggaagaagagaaagaaacacagaGGATGAGAGGAGGGGAGAGCGAGGATGAAGAATATATGGAGAAGATTTGAGctcttcacagcttctctttcCTGGGCCTTCCAGCAGCAGGCCGTACCGCCAAAGTACCAGTACCGCGATCCCGTGACATCTGACCTCCTGCTGTGCGACCAGTGCCCTCCTGGCACAGCAGTGAAGCGACACTGCACCGCTGCCGCACCCACAGAGTGCCAGGCCTGTCCTGAGAGGCATTTTGCTGAGAACTGGCACTGGGGGGATACGTGCCAATACTGCACCTCGgttTGCAAAGAGAGACAGCTTGTGAAGCAGCAGTGCAACAGCACTCACGACCAGCTGTGTGAGTGCGCTCCAGGTTTCCACCTAGTGGTGGAGTTCTGCATCACACACAGTACCTGTCCACCTGGCTATGGAGTGACAGCTTTAGGTACACCGGTCAGTGACACAGTGTGTGAACGTTGTCCCGCTGGTCATTTCTCCAGCGGCGACTCCACCACTGAGCCATGTCAGCCCCTCAGAAACTGCTCCGATTTGGGCTTGAAGACACTGAGATGGGGCACGTCCACCTCAGACAGCCTCTGCGGCACTCAGGACAAGACGGCAATGCTGGATTGTGCTCAGCCTCACACTTTGTGCCACACTGACGTGACCTTGTGTGAGGAGGCAGTCTTCCAGTCTCTTTCCTCCCTGCGACTGTCCTCGGTGCCCCTGGAGCAGCTGTTAGAGAGTCTCCCCGGGCGTAGTGTGGATCGTAAGAGCCTGGAGAGACTGAAAAAGGCCTGCTCTCCCCAGCAGCAGGTCCTCCAGCTGCTGCGACTGTGGAGGGAGCAGAACAAAGACCAGGACAAGATGTACAGCATCAtacaagGTGTGAACCACTGTGAGAGGAAAGTCTCTCGCTGCAACGGCCTAAAAAACCTGACCCTAGGTGATCTCCTGAAGGTAACTAACAGCCTGCCGGGGGTCAGAGTTCAGCAGGAGGATGTCCGGGCCGTGGTCTCTACTTGCCTGCCCAGGCAGTACATCCTGCAGCTTCTTCACCTCTGGAAGACTGCAAACTATGACCTGGATCTAGCCAAAGGCCTGTCTCACAGTCTGAGGGTGCTACGCAGCCAGGGGGCGCCACGCCATCTGCTGAAAGTCTTGAAGAAGATCAGCCGCATCATAGGAACCACCTCAGCGCACAAGATATATGAGAAGATGTTTGTCAGCGTGCTTCACGATGAGTCCTGTTTTAAGGCTCATAAGCCATTAAATGAATAGGGATTTGGGAGGTTCAAATAGGAACATATGGTATCTATAGCATAAACAGACACTAATGCATTGTCAGAtaaagaacacacaaacacataaagacacacccTTAGTGGAGAAATGTATCTGAAAGAGTAACAGACATTTAAGATATCACCAAATGACATCAAGCTATGCATAAAGTGCCTAACTGTAACACAGGGGCATGATGGGAGGGTAGATTTGTCGCTGTTTCTCTGATTTTCCAGCCAAACCCTCTGCCAAAATAAGGCTGTTTTGATTATATGAGGTAACAGGGGATGCTAATAATTCCACCCTCAgtctacagtatgtgtctgCAGTGATTAATCTAATAAGcctcaaaagaaagaaagaaaaactatCACACATCTCTGTACTCCAGGCaggctgaaaaagaaaaaaaggtttccTGGGAACTTTATGACCGGAGtctgtgaaaaatgaaaaactatTTAAGATGTAAATAGCACACTATTTTATGAAAGATAGGCAGGCAGATGTTgcgttttttattattatgcttTCTCGCTGATTAAGAGGAAGGATTTGGTTTCATAATGAAATACATGTATTTCCTACAGTTTCcctttgtttgttggtttgttctGGACTGCTGGCAAGTAAAGCGCATCTGAATTATTGTTAAATTGTCAGCTATATGAATGTACAAAGGAGTGCAATTgttttctatttaaaaaaataattctacTTTCTGAATATGtaaaggcttgttttttttattactatcaGAAATACTGGATTCCAAATGCTGCAAGTTTGTGAAGtgatatttgttttatattttgttttatcacttttatatTATTAAATGTACGATCTTTTTGTATATATGCTTGACTGGTCCTCTTTAAGCTCGAATAACTTGTGAACACTAAGTCAATTTATCTGATTAAAATCagtttgtaaaaa

Function

symbol description
tnfrsf11b Acts upstream of or within response to mechanical stimulus. Is expressed in head and scale. Human ortholog(s) of this gene implicated in Paget's disease of bone and osteoarthritis. Orthologous to human TNFRSF11B (TNF receptor superfamily member 11b).

NR:

description
PREDICTED: tumor necrosis factor receptor superfamily member 11B-like

GO: NA

KEGG:

id description
K05148 TNFRSF11B, OPG; tumor necrosis factor receptor superfamily member 11B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039806536.1 False 2284 mRNA 0.46 6 16698379 16718524
XM_039806537.1 False 2402 mRNA 0.47 7 16632876 16718524
XM_039806538.1 True 2493 mRNA 0.47 8 16632879 16718524

Neighbor

gene id symbol gene type direction distance location
mboat1 mboat1 coding upstream 124135 16495726 ~ 16508741 (+)
LOC120563110 dcdc2,LOC102296430,LOC102788673 coding upstream 925374 15682419 ~ 15707502 (+)
slc6a3 slc6a3 coding upstream 957654 15657241 ~ 15675222 (+)
LOC120562533 lpcat1,LOC103360438,LOC100699650 coding upstream 979824 15619516 ~ 15653052 (+)
irx2a irx2,LOC102783739 coding upstream 1218829 15408178 ~ 15414047 (+)
LOC120562690 NA coding downstream 3112 16721636 ~ 16724556 (+)
LOC120562939 NA coding downstream 7824 16726348 ~ 16729348 (+)
LOC120562315 NA coding downstream 14108 16732632 ~ 16816257 (+)
LOC120563118 scgn,LOC103369094,LOC103151166,LOC106960462 coding downstream 97918 16816442 ~ 16831163 (+)
LOC120562165 nov coding downstream 127429 16845953 ~ 16850232 (+)
G72801 NA non-coding upstream 138301 16494237 ~ 16494575 (+)
G72798 e2f3 non-coding upstream 142495 16489593 ~ 16490381 (+)
G72797 NA non-coding upstream 146957 16485713 ~ 16485919 (+)
G72796 NA non-coding upstream 150378 16482255 ~ 16482498 (+)
G72795 e2f3 non-coding upstream 150944 16480679 ~ 16481932 (+)
G72852 NA non-coding downstream 12313 16730837 ~ 16731044 (+)
G72859 NA non-coding downstream 241264 16959788 ~ 16962840 (+)
G72879 NA non-coding downstream 273192 16991716 ~ 16991989 (+)
G72862 NA non-coding downstream 347065 17065589 ~ 17065911 (+)
trnar-acg_16 NA non-coding downstream 650179 17368703 ~ 17368775 (+)
G72750 LOC104952694,LOC106925895 other upstream 560675 16018359 ~ 16072201 (+)
irx4a LOC103360443,LOC102233360,LOC103478376,LOC108232226,LOC101474805,LOC102784018,LOC102295185,LOC102202030,LOC104961814,LOC103145173 other upstream 1072584 15553464 ~ 15560292 (+)
LOC120561718 LOC107101581 other upstream 2000155 14626478 ~ 14632721 (+)
G72506 NA other upstream 2206696 14425794 ~ 14426180 (+)
LOC120562174 rbms3,LOC101066789,LOC103370884 other upstream 2262785 14175817 ~ 14370091 (+)
G73031 LOC103366415 other downstream 731061 17449585 ~ 17452568 (+)
ubxn11 NA other downstream 738119 17456643 ~ 17461118 (+)
G73123 phactr4 other downstream 926989 17645513 ~ 17647186 (+)
paqr7b LOC107588505,LOC104938075,LOC103388542 other downstream 1032406 17750930 ~ 17779130 (+)
kcnn4 kcnn4,LOC104953880,LOC100704922 other downstream 1680532 18399056 ~ 18420721 (+)

Expression


Co-expression Network