clstn3 (clstn3,LOC102784285)



Basic Information


Item Value
gene id clstn3
gene name clstn3,LOC102784285
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 24074083 ~ 24098119 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence


>XM_039806547.1
GGTTAACAAACGCTGAGAGGGAGGGGACGCCAGCGTAATATTCCCACCGTTTTTTCTCCTTGGTAGAGCCGAAAAAACAAGGGCATCCATCGGTCTCTTCGTTTTCCTCACACCTCATCTCACTAGTCTAACGTCAGGCATAAATAGGCTGTATACAGTACCCTGTCATTTCTTCCGCTGCTGTGTAAAGACTCTCTGTGTGTCCTTTCCTCTACCTGGAGGTTTGTTTTCAGCCTGCGGGGGGATTGCCGAGCCGAGCGGCAGGGGCGTGAGAGGCGGATGCTGCGAGCGTAGAGGCTGGGTACCAACCAGGAGCATCACCGCAACTCACCACGATGGACAGAATGAattttctctccttcttcctcctttGCTTGACTTCGGTTGCCAATAGcaacaaagCCAATAAGCACAAGCCATGGATCGAGACAGAGTACCAGGGGATTGTCATGGAGAACGACAACACCGTGCTGCTCAATCCCCCTCTCTTTGCCCTGGACAAAGATGCTCCACTACACTACGCTGgTGAAATCTGTGGCTTCCGGGTCCATAATGGCCCCTCTGGTTCAGGCTCGGTCCAGTTTGAAGCGGTGGTTCTGGACCGTTCCACTGGAGAGGGCCTGGTCCGGTCCAAGGAGCCGCTGGACTGCGAGAGCCAGCGGGAGCACAGCTTCACCATCCAGGCCTACGACTGCGGAGAGGGACCTGACGGAGTCAACAGCAAGAAATCCCACAAGGCCACTGTGCACGTTCGAGTAAACGACGTCAACGAGTTCTCCCCTGTGTTCGTTGAGCGTCGCTACGAGGCGTCAGTCCCAGAAGGGCGTCTGTTTGACCGAATCGTGCGTGTGGAGGCTCTGGATGCCGACTGCTCCCCGCAGTACAGCCAGATCTGCTtctatgacatcatcactccTAATGTGCCCTTCGCTATCGACAACGATGgtaacattaaaaacacagagCCGTTGGATTCCAAGCGCCAGCGGGTTCACACCTTCTGGGTGACTGCCTTCGACTGTGGAAAGAACCGCGCTCAGGCTGATGCCCAGGTTGTCGTCACGGTCAAGCCATCCTGCAAACCCGGCTGGATCGGATGGACCAAGCGCGTAGAGTACACACCTGGGTCAGGTAGCATCCCCCTGTTCCCCAGCCTGCATTTGGAGACATGTGAGGAGACTGTGTGGAACATCCAGGCCACCGTAGAGCTCCAGACCGGACACATCGGGAAGGGCTGCGACCGAGACAGCTACTCTGACAGATCTGTGCGACGGCTGTGTGGTGCTGTCAGGGGTGAGGTAGACCTCCTCCCACCTCCATCTCCTGCTGCCAACTGGACCTCAGCTCTGCCCACTCTCCCCTCCTCTGATTCATCTCTGGTCTTCTCCTTTAACGGATCCAACCACGTCGCTGTGGTGCCGGATTCGGTTGTCTCGGCATTGTCGGGTGACCACTTCACCCTGCAGCTGTGGATGCGAAGGGGCGGCGCCAACATCCAGCCTGCGACCACTCAGACCAGAGGAAGTCGCAAAGATGAAGAGACTATTGTGTGCAGCACTGTCAAGAACGATGATTCCTTCTCCCACTATTCCCTCTCTGTCCACGGCTGccgcctctctctcttctcttttctccccccccctctcaccCCCTCAcgtgttgtttctttttttttactggacaGGCTATGGAAACTAGAAGTGTGTGACAGTGAGTGGCATCATCTTTCACTCAGCGTCCAGTTCCCCTCGGTGACCCTGTATGTCGATGGTGTGACCTTCGACCCCGCCCTCATTCATGACAACGGAGCCATCCCCAACCCTGCCGCTCGCCAGAGGATGTTAATCGGCGCCTGCTGGGAGCCTGAAGAGAAGCAGAAGGAAATACTAAACAACACCATCCCAGAGGGTAAAGACTCAGTGAAGTATGTGGGTGGTTACCACGGCCTGTTGTCGGGGGTGACGGTGCGTCCCGGCAGCGTGGAACCTCACAGTGTGGTGGAGTGTCTGTACGCCTGCAGGGAGGGCCTGGACTTTGGAGACCTGGAGACTCTGGGCTCTGGCATGAAGGTTCATGTGAACCCCAGCCAGTCAGtgttggtgctggagggagacGACATTGAGAGCTTTAACCGTGCAGTGCAGCAGGTCACCTACAGAAACTCTCTGCGTTTCGCCACCCCTGGAGTCCGACCCCTCAAACTTACCACCTCGCTCagATGTTTCAACGAGGAGAGCTGTCTGTCACTCAAGCAACTGGAAGGATACCTGGTGGTTCTCCAGCCTGACGCCCCTCAAATCTCTCTGTCTGGGGTCGGCCCTCATCTGGCTCGTCCTGCCCCTGAGTTTGAGGGTCCCCGTGGTGTCCCCCTTTTCCCCGAGCTCCGGATCGTCTGTTCCTTGTCTCATGCAGTCAACACGGCTGCACAGGGGATGGAGGGTGGAGCTCTGATGTCTGACGCTGTGGCTCACACTTTGGATGGCTGTGAGGTCCAACCACTGGGGGAGGAGCTAAACCCAGAGAGGGAGGAGCTTCTGGTGGACATGGATGTTGTGCGAGAGAGGGGGCTGGAAATCATCAATACTACTGCTTATATTGCCATCACAGGTGCCGAATCCATCTCTGTGTACGAGGACGTCCTTCGCTCGGTCCGCTACCGACTGGCCAAAGGCTCAGCCCGCTTCGAGAGGCGGTTCCGCCTGTCCTGCTCTGAGATGAATGGCAGATACACAAGCAATGAGTTGACTCTGGAGGTGAACTTCCTCCACTCACTTGATAGTCTGTACCACCCATCCCACCTGCTGGCCTCCCAGCAGCAGTTTCTCCATCCGTCTCACCACGCTGGAGAGCTGAGTGGACACACTCTGCCCAATCCTCACCGCAACTCAGTGGTGCCAGGAGCAGCCACCGTCATCATAatggtgtgtgtgggtttcCTGGTTGTCATGGTGATCCTCGGTGTTTTCCGAATTCGTTCCATCCATCGCCGTGGTGAGGATTCCAGGGGCGGGGCTAAGGAGGGTAGCAGCCAATGGGACGACTCTGCCCTCACCATAATCGTCAACCCCATGGAGtcctatgagTCTCGTATGGGCATCTCTGCTGAcacagagggggagggggaggaggacgaggaggtaGCAGAGTCACCTGAAGACGCCAGCGACGACCAGCGAATCATCATCAAAAAGGAGGGGAGGGACGGCAACGCCCGCCGCTACTGAGCCACATGTGTCTCTGCACCAGTTCTCATGGAAACCACAAACAGGCTCACCAGTCACACACTACAACACTTTTAATATCAACGACTGCTGACACTACTAGTATAAGGAATGTATGCTTACAAACACTACGCACAACACAGTCACTGTAATACTTTTGACACTCAACGCCATATGTGACCTACAGCCAACAACGGGCAGTTGTTCACCATCTAAATGTTCAATGgcacaatgtatacatttaatGTAATTTAACCGCCTGAGCAAACCCCACGAAAATCGTATGTGGTGCACCAGTTCTAAATCACAAGATGGTAATCTGTCTGTATAGTGAAATACCAGTTGAATGAGActgcttttgtttaaaaaaaaaaagaagaaaaaaagattgtattTTATCTTTTGTTATTGAACACAGAATGAAAATGTATGAAGtctttacaaaatgaaaacGGGAACAAACCGCAACATGCAGGCCTTGAATAGATCTGTAGGCAAAGACATGAGCCTTGATCCTGACATGTCTCTGCACTCCCTTATTTGACTTGACTCGAGAAGTCTGTGCACAAGctcttttctccctctttgCATCCTCTCTTGACACATTCCTCGACCACTGTTAACCGCAGAGTAAAGACAGTGAGGTCAGACATTACAGTCACTCAACAACTTATTCATAAAAACTCAAAAACACTACGCTTGCAGGTATTTTTCTCTTGGTATTGTGGCTACTTTAGTGCTTCAGCTCTCAACTATATTTCATGTGGTGCTGAAGATAAGATGAGAAGATCTGAGGACTATCAACCATACCCCGCACCCGTTACACAAGTTGGTACTTATGCAATACCCAGATGCAGAGTAAAAGCCTCTAGGTGTTGAGTCAGGAGTCTTTGCAAAGTTTAGCTTGTGCCGCTAAATGACAAAACATAACCATCTACAGTAAACCTGGTGTaccctgacctttgacccctctcACAGTGACCGCTGGAATGTCTCTAGATGACTCTCACTGCAGTCTGTACACTGCTCTTACATTAACTGCaagacgtcacacacacacacacacacacacacacacacacagtagactCCATAATGCTACCCCTGCTGTTTCCAGAATGTCAGCTCAGCTTGGGCAGTTTTGATTGTATTGATTGTAATGAAATTCCTGTACATACAATgatgaatattatattattgttattactattattattgcAGCAGCCactcttctctttttctgcGTATTTCGAGAGGGAGCAGATTATGATTTACTTTTTTCCATTTGAGTTATCACTTTTACAGCATCAGAAAactgtataataatattaataataataataatagtagtagtagtgataCGGATGATAATCCCCGGCTTGATGAGTGTCTCTTaatttgtgtgtattgttgtaaTTTAAGAACTTGTCAATATCTGAATCACAGAAAAAGGAGGGCACATTGTTGTGATACTTAGATACGTCTCACTCATTTCATTTTTCACCATTCCAggtcatttttttcacatttcaaaaCTGAACCGCACAATTATTTTCTATTGCACTCCATCCGATATATTTGGTTCAATGAATGTACAACTGTGTGCTTCTCCTCACCTCCCCCTGCCTCCCTGTCTTTCCCCCgcacctctccctccctctccctctgtgtctcttgctgtctgtctgtgtagccTATCAATGTGCAGTGCTAAACCTGTCAGTAAATAAAGCCTGTCGTTTTTGAGTGTGATGTTAAGAAGGAATAAACATTGCATTGATTAATAACTTATATTATTACTATGTTACTATTGGAACATTACCTGTAATTATTGATACAATGATGACATGGATTATGCTGACTAATTGTTATTGAGAACTGTCAGaaaacattacaaaattcaTAATAAAATCACTATATGACGTCTC

Function


symbol description
clstn3 Predicted to enable calcium ion binding activity. Acts upstream of or within homophilic cell adhesion via plasma membrane adhesion molecules. Predicted to be located in Golgi membrane; cell projection; and synapse. Predicted to be integral component of membrane. Predicted to be active in cell surface and postsynaptic membrane. Is expressed in forebrain; hindbrain; midbrain; spinal cord; and telencephalon. Orthologous to human CLSTN3 (calsyntenin 3).

NR:

description
PREDICTED: calsyntenin-3 isoform X1

GO: NA

KEGG:

id description
K22661 CLSTN3; calsyntenin 3

RNA


RNA id representative length rna type GC content exon number start site end site
XM_039806547.1 True 5149 mRNA 0.50 19 24074083 24098119
Loading

Neighbor


gene id symbol gene type direction distance location
LOC120563208 NA coding upstream 19755 24054272 ~ 24054328 (+)
LOC120562699 eno2 coding upstream 48229 24019895 ~ 24025854 (+)
mlf2 mlf2 coding upstream 54988 24010883 ~ 24019095 (+)
wnt4b LOC104932544,LOC103356104,LOC101479331 coding upstream 71539 23998435 ~ 24002544 (+)
LOC120562185 NA coding upstream 136262 23921770 ~ 23937821 (+)
pex5 pex5,LOC102783438 coding downstream 1702 24099821 ~ 24113212 (+)
cdca3 NA coding downstream 17384 24115503 ~ 24118065 (+)
usp5 usp5,LOC102781302 coding downstream 37570 24135689 ~ 24151437 (+)
cd4-2.2 NA coding downstream 53617 24151736 ~ 24162316 (+)
cd4-1 NA coding downstream 65026 24163145 ~ 24180552 (+)
G75523 tpi1,tpi,LOC102304959 non-coding upstream 21127 24048925 ~ 24052956 (+)
G75517 NA non-coding upstream 42744 24027883 ~ 24031339 (+)
G75493 NA non-coding upstream 98349 23972327 ~ 23975734 (+)
G75483 ptpn6 non-coding upstream 125680 23943493 ~ 23948403 (+)
G75427 NA non-coding upstream 189452 23883177 ~ 23884631 (+)
G75582 gnb3,LOC103375278 non-coding downstream 21198 24119317 ~ 24122009 (+)
G75583 NA non-coding downstream 23908 24122027 ~ 24125081 (+)
G75611 NA non-coding downstream 118021 24216140 ~ 24216569 (+)
G75622 flot1,LOC108235422 non-coding downstream 197719 24295838 ~ 24296723 (+)
LOC120562289 NA non-coding downstream 370715 24468834 ~ 24488842 (+)
lpcat3 lpcat3 other upstream 385 24056437 ~ 24073698 (+)
atn1 atn1 other upstream 34656 24026915 ~ 24039427 (+)
LOC120563047 vamp1,LOC104928996 other upstream 194668 23873909 ~ 23879415 (+)
LOC120563204 NA other upstream 260675 23768233 ~ 23813408 (+)
casp2 casp2,LOC102795506,LOC103369458 other upstream 422587 23641555 ~ 23651496 (+)
G75644 NA other downstream 337020 24435139 ~ 24436819 (+)
dedd1 dedd2 other downstream 422616 24520735 ~ 24534276 (+)
grik5 grik5 other downstream 708170 24806289 ~ 24885373 (+)
LOC120561858 NA other downstream 817135 24915254 ~ 24996309 (+)
LOC120561674 LOC104943405,LOC103477911,LOC108235491,LOC108235490,LOC102233864,LOC107379681 other downstream 1276088 25374207 ~ 25380798 (+)

Expression


clstn3(clstn3,LOC102784285) Expression in all Baseline Samples

Bar chart with 13 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 150.
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clstn3(clstn3,LOC102784285) Expression in each Bioproject

Bar chart with 8 bars.
clstn3(clstn3,LOC102784285) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 300.
End of interactive chart.

Co-expression Network