nr1d2a (LOC103375162)


Basic Information

Item Value
gene id nr1d2a
gene name LOC103375162
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 30968581 ~ 30976242 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039806558.1
TTTAGTTCTTCTGACTGAACCGCAGTCACACAACAATAGTGGAGCTCCTCCGATTCAGACGCATCCAACggacttgctctctctctctctctctcggagaCTCGGACCTGTAGTTTAATATTTATTCTTCTCCCGTCGTCTTTTCGTGACAGTGGCAAAATTCGTGAcagacagttgagtttagctgaATTATCCGTTGgagattagttttttttgttttctcgaACAGAGATGCCTGAGGACATCCGGACAGCCAAGCCTGGAGGAGTCATTGCCTATATTTCCTCCGGCTCTGCCTCCAGCCCAGAGTCCTGCCTGAACAGGGGCTACCTGTCGATATCGCAGACAGTGCCCCGCCCGTCGCTGCCCAGCAGGGCTGTGGGCATGGTGGTGGATATCTCTCGGCCGGCCAAGAACGGCCACCAGCGCGGCGGCCACGGCATGGAAAAGGCCGGGCGCTCCTCCACGTCTGCCAAGAGCAGCATTACCAAAATCAATGGCATGGTGCTGTTGTGCAAGGTGTGTGGTGATGTGGCCTCGGGCTTCCACTATGGCGTCCATGCCTGTGAGGGCTGCAAGGGATTCTTCAGGAGAAGCATCCAGCAGAACATCCAGTACAAGAAGTGTCTAAAGATGGAGAACTGCACCATCATGAGGATCAACAGGAACCGCTGCCAGCAGTGTCGGTTCAAGAAGTGTCTGGCTGTCGGCATGTCCAGAGATGCTGTCCGATTTGGCCGCATTCCAAAGAGGGAAAAGCAAAGGATGCTGCTGGAGATGCAGAACGCGATGAACAACATGATGAGCAACAACAGCCAGCTGCACAGCATGCTGCACGGCCACCCGAGCCCAGCACTTTCCATGGAGGCCATGACCAGCGACGCCAGCTCTTCAgcctcctcatcttcctcctcctcctcctctgcttccGAGTCCCCGACGTGCTCCAACCCTTCCTCCCCGCAGTGCCCCCAGGACTCCGAGTCCGTGGTTTCTATGGACACCAACTCCAGCTCTGCGTCCTCCTGCGCGTCAGACAGCGGCGAGGACGAGGCCGTCGCCACAATGAGCAGGCAGCACCGGGACGCCTTTGCCTTCGGCCAACAGAGGTCCCAGGCCTCGCCCTTGTCCGGCCCCGTCACCCTGGAGACGAGGTGCGACGGCCGCCTGGAGGCTCAACAGGAGAACTGGAGCTGCTGGAACAACAATGTGGTTGTGGGAGGTCACCAGCCGAGTTCATACAGTAACAGTCAACACGTCGCCGACACTGCTTACAGGGAGGAGAGGGCAGtgaaccagcagcagcagctcaacaGCACCCCTAGCTGTGAACTACCAGAAGACAGCCAAAGACAGCACGTATATCGCACACAACCTGCCTCAAGAGGTTATAACGGGCCGACCAGCTGTGTGAATAATAGAGCACACTTGgtCTGTCCGATGAACACGTCACCCTTCGTGGACCCCAACAAGCCGAGCCAAGAGATCTGGGAGGAGTTCTCCATGAGCTTCACCCCCGCCGTGCGGGACGTGGTCGACTTCGCCAAGGGGATCCCGGGCTTCTGCGACCTCCCCGAGCACGACCAAGTCAGCCTGCTGAAAGCTGGAACTTTTGAGGTGCTGATGGTCCGATTCGCCTCTCTGTTCAACGTGGTCGAGCGGACGGTGACCTTCCTGAGCGGCAAGCGCTACAGCCTGGACACGCTGCGGTCGCTGGGCGCCGGCGAGCTGCTCAACTCCATGTGCGAGTTCAGCGAGAAGCTGGCGGTGCTGGGGCTCGACTCGGACGAAATGAGCTTCTTCACCGCCGTGGTTCTCGTCTCAGCCGATCGCTCAGGGATCCAGGACCTGGACTCAGTTGAGGCCCTGCAGGACAAACTGATCCGGGGGCTGCGAAACCTGGTGATGCAGAACCACGGCGAGGAGTCCGCCACCACCTTCACCAAGCTGCTGCTCAAGCTTCCCGAGCTGCGTTCGCTCAACAACATGCACTCCGAGGAACTGCTCTCCTTCAAAGTGCACCCTTGAACGCTTCCTGACCTTATCCACACGCCTCCACCTCCACCAGGACCTGCCTCTCACTGGCCCCTGACCCTCCGTATTCAGACCAACCCAGTTGCGTGTTTGTTTTCTCGAATgtattaaaagttgttttttttattctattttccttaGGTAGGCCATGTGGGGTCTAAAGAGAGAAGAATATAAAATCTACTGTATTTATAGAAGAGATAGCTTACACTtgttgcacacaaacacacgcaagTACATGCGTGTCAGAGGTTTTTATTTTCCAGAGAACGAAAGAGTACTTACCTGGCTTTAAGAAATGATATGAGTAGAAAAGAATTAGTCCGAAAGCCATTCAAAAGTGTATTCTCTGACGAGCGGGTAAATGTGAGAGACGGTATATACCTTACGTACGTAATATTTTTAACTGATACATGTCGGCGAGAAAGGCAAGCTATCAGAAAAGTATCGAAGAATGTGTGATGATCGCTGCTAATGCATGGCTGTACTTAATGCAAACAATTATTACTTGGATCTTCTCCCCATTGCCTCAGAAAGCATCAGTTCATAgtttcagtatatatatatatatatata

Function

NR:

description
nuclear receptor subfamily 1 group D member 2

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0030522 intracellular receptor signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039806558.1 True 2610 mRNA 0.54 8 30968581 30976242

Neighbor

gene id symbol gene type direction distance location
LOC120562211 ube2e1,LOC106534515,LOC101480162,LOC103357960,LOC100705406 coding upstream 3164 30951233 ~ 30965417 (+)
LOC120562210 LOC103357958,LOC107379173,LOC102233395,LOC103388353,LOC100705137,LOC103477709,LOC106523089 coding upstream 19393 30909030 ~ 30949188 (+)
si:dkey-82o10.4 NA coding upstream 255190 30705031 ~ 30713391 (+)
LOC120562225 LOC103356864 coding upstream 578149 30362707 ~ 30390432 (+)
LOC120561719 vmo1 coding upstream 745057 30218997 ~ 30223524 (+)
LOC120562709 NA coding downstream 12521 30988763 ~ 31008397 (+)
LOC120561533 rarb,LOC102205684,LOC101478141 coding downstream 48742 31024984 ~ 31044407 (+)
sept7b LOC103370332,LOC107379178 coding downstream 89523 31065765 ~ 31084517 (+)
si:dkey-256h2.1 NA coding downstream 138507 31114749 ~ 31131084 (+)
mios mios coding downstream 187177 31163419 ~ 31175385 (+)
G77260 NA non-coding upstream 565877 30398276 ~ 30402704 (+)
LOC120562235 NA non-coding upstream 749978 30216748 ~ 30218603 (+)
LOC120562092 NA non-coding upstream 847485 30118008 ~ 30121096 (+)
G77198 LOC103388947,LOC102796900,LOC101464846 non-coding upstream 1069828 29894234 ~ 29898753 (+)
G77172 NA non-coding upstream 1155040 29812931 ~ 29813541 (+)
G77399 NA non-coding downstream 499 30976741 ~ 30977081 (+)
LOC120562708 NA non-coding downstream 2085 30978327 ~ 30988733 (+)
LOC120562710 NA non-coding downstream 38891 31015133 ~ 31016447 (+)
G77555 NA non-coding downstream 537894 31514136 ~ 31514561 (+)
G77554 NA non-coding downstream 541521 31517763 ~ 31518618 (+)
rab5ab rab5a,LOC104947906,LOC103388351,LOC105936747,LOC100704868,LOC101078239,LOC104931780 other upstream 236972 30687338 ~ 30731609 (+)
LOC120562443 NA other upstream 607993 30351495 ~ 30360588 (+)
G77239 NA other upstream 843943 30123702 ~ 30124638 (+)
rgl2 LOC101463702,LOC100700084,LOC102303531,LOC102796597 other upstream 859036 30073937 ~ 30109545 (+)
G77028 LOC104942601 other upstream 1556168 29404008 ~ 29412413 (+)
G77447 NA other downstream 158587 31134829 ~ 31136146 (+)
G77682 tbx20 other downstream 1000076 31976318 ~ 31979909 (+)
LOC120561717 NA other downstream 1428891 32405133 ~ 32421472 (+)
G77888 NA other downstream 2124171 33100413 ~ 33101534 (+)
bmper bmper other downstream 2849845 33826087 ~ 33879132 (+)

Expression


Co-expression Network