hoxa11b (LOC102793196,LOC102195329,LOC104949897,LOC101079822,LOC103364044)


Basic Information

Item Value
gene id hoxa11b
gene name LOC102793196,LOC102195329,LOC104949897,LOC101079822,LOC103364044
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 19859104 ~ 19861275 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039806563.1
CCAGTCTGCCTCAAAGTGGCTGGAGCGCAGCGCCGCGGAGGAGCTATGAAAGGATTATTATAGGACGTTTCCAACAGCAGAATATGGATTTTGATGAGCGGATCTCCGGCTCTAATATGTATTTACCGAGCTGCACTTACTACGTCTCCGGAGCAGACTTTTCGGGTCTCCCTCATTATTTAACCCAGAGCCAGTCCTCTTGCCCCATGACATACCCCTACCAGTCCTCTGCCCTGCCACAGGTCCCGTCCGTGAGAGATGTGGCTTTCAGAGACTATGGGATTGATACTTCCAGTAAATGGCACCACAGCAGGGGGAGCCTGTCACACTGCTACCCTGAGGACATCGTGCACAGAGACGGCTGGACGAGCCCGAGCTCACGGGGGGCAGAGATCCTGGTGAAAGGCAGCTCCAGCGCCAGCCACTCCAGCTCCTCCAGCAACCCGACTTCTGGCTTCTATGGCAGCGTTGGCAGGAACGGCGTCCTGCCACAGGCGTTCGACCAGTTCTTCGACACTGCCTACGGGAGCGCAGAGAGCAGCACAACGCCGACAGCCCAAGCATTAGACTCGGACAGACACGACGCCAAAACAAGTCCCGCTCCGGCTCCTCCGGGCTCGGACACGGCGGAGAGCTGCAGCCCCAAGTCGTCCTCCGGCCACTGCGAGGAGAAACAGAGCAGAAGCAGCAATGGCCAGAGGACGCGCAAGAAGAGATGTCCATATTCAAAGTATCAGATCCGGGAACTGGAGAGGGAATTCTTTTTCAGCGTTTACATCAACAAAGAGAAGCGCATGCAGCTCTCACGGATGCTCAATCTGACTGATCGCCAGGTCAAAATCTGGTTTCAGAACAggaggatgaaggagaagaaactgaaCAGAGACCGTTTACAGTACTACACCACAACCCCCCTGCTATAAACACTGAACAAAGACTGACATACAGCCATTCACCCATCATCAAGACACACATGTTACATGACGAGTTTTTAACGTGCCAGAATTCATAAAGAATTCTACTATTTATACACTATTTTGTCATTAAAATACGggggcattattattattattattattattattattattatttaggccTGTTATTGGCCTGCTTGCCCGACCAATCAACAATTTTCCAAAGTTAAGTGGTTGCCTGTATGGTGTGCTTATCAGAAAGCCAGATGTGTctgatttctttttgtattatttaataataCACACGGAGATTACTGTA

Function

NR:

description
homeobox protein Hox-A11b-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039806563.1 True 1236 mRNA 0.50 2 19859104 19861275

Neighbor

gene id symbol gene type direction distance location
hoxa13b LOC103364045,LOC102793494,LOC100691939,LOC104927762,LOC104949896 coding upstream 5516 19851243 ~ 19853588 (+)
hibadhb hibadh,LOC104927761,LOC100691671,LOC101485952,LOC102793794,LOC102194756,LOC105926386,LOC103478572 coding upstream 11702 19838549 ~ 19847402 (+)
jazf1b jazf1,LOC104949891 coding upstream 40084 19806778 ~ 19819020 (+)
cpvl cpvl,LOC102795305 coding upstream 99082 19753700 ~ 19760022 (+)
fkbp14 fkbp14,LOC102795884 coding upstream 133839 19723408 ~ 19725265 (+)
hoxa10b hoxa10,LOC103364043,LOC104927764,LOC100692649 coding downstream 3880 19865155 ~ 19867601 (+)
hoxa9b hoxa9,LOC104927766,LOC104949899,LOC103364041 coding downstream 7905 19869180 ~ 19870738 (+)
hoxa2b LOC100534423,LOC102306217,LOC102196176,LOC102792302 coding downstream 15602 19876877 ~ 19878668 (+)
skap2 NA coding downstream 20602 19881877 ~ 19891979 (+)
LOC120561951 NA coding downstream 81712 19942987 ~ 19945175 (+)
G73836 NA non-coding upstream 38513 19820235 ~ 19820591 (+)
G73776 hdac9 non-coding upstream 219645 19634873 ~ 19639459 (+)
LOC120562701 NA non-coding upstream 233493 19614503 ~ 19625611 (+)
LOC120562732 NA non-coding upstream 402488 19453769 ~ 19456616 (+)
G73606 NA non-coding upstream 539056 19319438 ~ 19320048 (+)
G73871 NA non-coding downstream 157834 20019109 ~ 20052006 (+)
G73881 NA non-coding downstream 179596 20040871 ~ 20046380 (+)
G74067 NA non-coding downstream 453209 20314484 ~ 20318117 (+)
G74081 NA non-coding downstream 479066 20340341 ~ 20340927 (+)
G74091 NA non-coding downstream 541548 20402823 ~ 20423897 (+)
G73779 hdac9 other upstream 209593 19646975 ~ 19649511 (+)
si:ch211-254p10.2 LOC102209663,LOC101158134,LOC102295699,LOC101064473 other upstream 405821 19447167 ~ 19453283 (+)
hcst LOC104925504,LOC104961397 other upstream 667002 19190020 ~ 19192102 (+)
G73570 LOC103371659 other upstream 700109 19148613 ~ 19158995 (+)
kmt2bb kmt2b other upstream 997146 18833245 ~ 18861958 (+)
LOC120561838 tppp other downstream 331415 20192690 ~ 20209327 (+)
si:ch211-257p13.3 kifc3,LOC102783047 other downstream 353313 20214588 ~ 20226991 (+)
gra NA other downstream 461055 20322330 ~ 20325961 (+)
glipr2l glipr2 other downstream 739048 20600323 ~ 20605165 (+)
sec61b sec61b,LOC102796100 other downstream 1146738 21008013 ~ 21011414 (+)

Expression


Co-expression Network