trmt11 (trmt11)


Basic Information

Item Value
gene id trmt11
gene name trmt11
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 13252697 ~ 13264092 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039806591.1
TGTTCCTACTTGCTCGGTTTCAAACCGGACGTATTTTGAATCTGCAACAAATATGGCGACCTCCAATAGTCGATCATGCCTCCAGTATCTGCTACACCTTGCCCAAGATAATTTGGACTTCAGGTTGCCGGAGATTAAGGCCTTGCTGGCTCTTAGAGGAAAATCATTCCAGCCGAGTGGAAACTTCAAAGAAAAGTCTCCTTTCTGGTGCCTGGATGGTTTGTCTGAGGAGGATGTCTGCAGTGTCATGTCCAGATCCGTTTGTGCAAAGTCTGCTTTTGAACTTTGGGGCCACggaaaaacacacagtgaaCTTAGAACATCCCTCTTGAACTACCCATCGGAGAACATGTCACCATTCATGCAAAAAGACTCCACTTACAGAATCAATGTCTATACTTTCAACAAGACTCTGGAGTTTGCAGACAGAATCAAAAGGATTGAtGCTATGGAGTTTCTTCCGTTTGAAGGAGCTGTGAGCCTGAAGAGCCCTCAGCACTGCTTCTGTTTGTTGGAAGATTACGGCACAGACCCCAACGACATCCCTGAGCATCCAAACTACATCTATTTTGGCCGATGGATAGCGGATGGACAGCGTGAACTGATCCGCTCCCACAGTGTGAAGAACAGACACTTCATAGGGAACACCAGTATGGATGCTGGCCTCTCATTCATTATGGCCAACCACGCTAAAGTCAATGAGAACGATCTCGTCTTTGACCCGTTTGTTGGCACAGGGAGCCTGTTGGTAGCATGTTCTCATTTTAGAGCCTACGTCTGTGGAATGGATATTGATTACAACACCATTCATGGCAGAGGCCGGTCAAGCCGCAAAGACCAGAAGTGGCGAGGGCCTGATGAGAACATCAGAGCCAACCTGCGGCAGTATGGAACAGAGGAGATGTATGTAGATGTAATGGTGTCTGATGCATCCAAGCCTGTGTGGAGGAAGGCTGCTCTGTTTGATGCCATCATTACTGATCCTCCGTACGGTATCCGTGAGTCCACACGGAGAACGGGCTCCCACAAAGACGTTCCTAGACCCCCTGATGTCCTCTATGCCGAGTCTCACGTTCCCGTCTCACAGGCGTACCACCTGAGCGACATCTTCACAGATCTGTTAAACTTCTCTGCCCACCACCTGGTCTTGGGCGGGAGGCTCGTCTATTGGCTGCCTGTCTACAGACCAGAGTACTGTGAGGAGGTGGTACCTCTCCACCCGTGTCTCCGGCTCATCAGTAATTGTGAGCAGACACTCTCCAGCCACACCTCGCGGCGCCTGATCACCATGGAGAAGATCAAGAACCCTGAGGAATTAGACAGTCTGGCTCATTTAGCAGACCCACGCTTCAGCCCCTACCAGGGGCACAACGCCTTCAGAGAGAAGTATTTCAGTGGACAAAACAAGAGGTGTGGCAAGGAGGACAGCAAAACtgttgtcaatggagagtgaaCGAATCGATTGCCTAAGTGTCTTTATAGAAGACCGAAAACAACAGCACCCAAGAATCAGAACGTGGTTGTCAATGGACTCAAAGAGGGAAACAAACTGATCACTTATTTGTTACAGTTGTAATTTTTAAAATCTTTCTCACTATTTTaattatgattatttttatGCTTGTACTTATTGCTTTGCAAATAAATTGATAAAATACAGTC
>XM_039806592.1
ACATGAGCGCAAAATACACCCATGGGAGATTAAGGCCTTGCTGGCTCTTAGAGGAAAATCATTCCAGCCGAGTGGAAACTTCAAAGAAAAGTCTCCTTTCTGGTGCCTGGATGGTTTGTCTGAGGAGGATGTCTGCAGTGTCATGTCCAGATCCGTTTGTGCAAAGTCTGCTTTTGAACTTTGGGGCCACggaaaaacacacagtgaaCTTAGAACATCCCTCTTGAACTACCCATCGGAGAACATGTCACCATTCATGCAAAAAGACTCCACTTACAGAATCAATGTCTATACTTTCAACAAGACTCTGGAGTTTGCAGACAGAATCAAAAGGATTGAtGCTATGGAGTTTCTTCCGTTTGAAGGAGCTGTGAGCCTGAAGAGCCCTCAGCACTGCTTCTGTTTGTTGGAAGATTACGGCACAGACCCCAACGACATCCCTGAGCATCCAAACTACATCTATTTTGGCCGATGGATAGCGGATGGACAGCGTGAACTGATCCGCTCCCACAGTGTGAAGAACAGACACTTCATAGGGAACACCAGTATGGATGCTGGCCTCTCATTCATTATGGCCAACCACGCTAAAGTCAATGAGAACGATCTCGTCTTTGACCCGTTTGTTGGCACAGGGAGCCTGTTGGTAGCATGTTCTCATTTTAGAGCCTACGTCTGTGGAATGGATATTGATTACAACACCATTCATGGCAGAGGCCGGTCAAGCCGCAAAGACCAGAAGTGGCGAGGGCCTGATGAGAACATCAGAGCCAACCTGCGGCAGTATGGAACAGAGGAGATGTATGTAGATGTAATGGTGTCTGATGCATCCAAGCCTGTGTGGAGGAAGGCTGCTCTGTTTGATGCCATCATTACTGATCCTCCGTACGGTATCCGTGAGTCCACACGGAGAACGGGCTCCCACAAAGACGTTCCTAGACCCCCTGATGTCCTCTATGCCGAGTCTCACGTTCCCGTCTCACAGGCGTACCACCTGAGCGACATCTTCACAGATCTGTTAAACTTCTCTGCCCACCACCTGGTCTTGGGCGGGAGGCTCGTCTATTGGCTGCCTGTCTACAGACCAGAGTACTGTGAGGAGGTGGTACCTCTCCACCCGTGTCTCCGGCTCATCAGTAATTGTGAGCAGACACTCTCCAGCCACACCTCGCGGCGCCTGATCACCATGGAGAAGATCAAGAACCCTGAGGAATTAGACAGTCTGGCTCATTTAGCAGACCCACGCTTCAGCCCCTACCAGGGGCACAACGCCTTCAGAGAGAAGTATTTCAGTGGACAAAACAAGAGGTGTGGCAAGGAGGACAGCAAAACtgttgtcaatggagagtgaaCGAATCGATTGCCTAAGTGTCTTTATAGAAGACCGAAAACAACAGCACCCAAGAATCAGAACGTGGTTGTCAATGGACTCAAAGAGGGAAACAAACTGATCACTTATTTGTTACAGTTGTAATTTTTAAAATCTTTCTCACTATTTTaattatgattatttttatGCTTGTACTTATTGCTTTGCAAATAAATTGATAAAATACAGTC
>XM_039806594.1
cagacgAGTCCCTGCTCCCGCGGAGATTAAGGCCTTGCTGGCTCTTAGAGGAAAATCATTCCAGCCGAGTGGAAACTTCAAAGAAAAGTCTCCTTTCTGGTGCCTGGATGGTTTGTCTGAGGAGGATGTCTGCAGTGTCATGTCCAGATCCGTTTGTGCAAAGTCTGCTTTTGAACTTTGGGGCCACggaaaaacacacagtgaaCTTAGAACATCCCTCTTGAACTACCCATCGGAGAACATGTCACCATTCATGCAAAAAGACTCCACTTACAGAATCAATGTCTATACTTTCAACAAGACTCTGGAGTTTGCAGACAGAATCAAAAGGATTGAtGCTATGGAGTTTCTTCCGTTTGAAGGAGCTGTGAGCCTGAAGAGCCCTCAGCACTGCTTCTGTTTGTTGGAAGATTACGGCACAGACCCCAACGACATCCCTGAGCATCCAAACTACATCTATTTTGGCCGATGGATAGCGGATGGACAGCGTGAACTGATCCGCTCCCACAGTGTGAAGAACAGACACTTCATAGGGAACACCAGTATGGATGCTGGCCTCTCATTCATTATGGCCAACCACGCTAAAGTCAATGAGAACGATCTCGTCTTTGACCCGTTTGTTGGCACAGGGAGCCTGTTGGTAGCATGTTCTCATTTTAGAGCCTACGTCTGTGGAATGGATATTGATTACAACACCATTCATGGCAGAGGCCGGTCAAGCCGCAAAGACCAGAAGTGGCGAGGGCCTGATGAGAACATCAGAGCCAACCTGCGGCAGTATGGAACAGAGGAGATGTATGTAGATGTAATGGTGTCTGATGCATCCAAGCCTGTGTGGAGGAAGGCTGCTCTGTTTGATGCCATCATTACTGATCCTCCGTACGGTATCCGTGAGTCCACACGGAGAACGGGCTCCCACAAAGACGTTCCTAGACCCCCTGATGTCCTCTATGCCGAGTCTCACGTTCCCGTCTCACAGGCGTACCACCTGAGCGACATCTTCACAGATCTGTTAAACTTCTCTGCCCACCACCTGGTCTTGGGCGGGAGGCTCGTCTATTGGCTGCCTGTCTACAGACCAGAGTACTGTGAGGAGGTGGTACCTCTCCACCCGTGTCTCCGGCTCATCAGTAATTGTGAGCAGACACTCTCCAGCCACACCTCGCGGCGCCTGATCACCATGGAGAAGATCAAGAACCCTGAGGAATTAGACAGTCTGGCTCATTTAGCAGACCCACGCTTCAGCCCCTACCAGGGGCACAACGCCTTCAGAGAGAAGTATTTCAGTGGACAAAACAAGAGGTGTGGCAAGGAGGACAGCAAAACtgttgtcaatggagagtgaaCGAATCGATTGCCTAAGTGTCTTTATAGAAGACCGAAAACAACAGCACCCAAGAATCAGAACGTGGTTGTCAATGGACTCAAAGAGGGAAACAAACTGATCACTTATTTGTTACAGTTGTAATTTTTAAAATCTTTCTCACTATTTTaattatgattatttttatGCTTGTACTTATTGCTTTGCAAATAAATTGATAAAATACAGTC

Function

symbol description
trmt11 Predicted to enable tRNA (guanine-N2-)-methyltransferase activity. Predicted to act upstream of or within methylation. Predicted to be active in cytoplasm. Orthologous to human TRMT11 (tRNA methyltransferase 11 homolog).

NR:

description
PREDICTED: tRNA (guanine(10)-N2)-methyltransferase homolog

GO:

id name namespace
GO:0032259 methylation biological_process
GO:0008168 methyltransferase activity molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K15430 TRM11, TRMT11; tRNA (guanine10-N2)-methyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039806591.1 True 1662 mRNA 0.47 13 13252988 13264092
XM_039806592.1 False 1557 mRNA 0.48 13 13252697 13264092
XM_039806594.1 False 1554 mRNA 0.48 13 13253192 13264092

Neighbor

gene id symbol gene type direction distance location
LOC120561555 ncoa7,LOC104938018 coding upstream 9472 13239114 ~ 13243225 (+)
cmtm8b cmtm8 coding upstream 37342 13211579 ~ 13215355 (+)
ulk4 ulk4,LOC104943585 coding upstream 152228 12998150 ~ 13100469 (+)
mroh1 NA coding upstream 371294 12851758 ~ 12881403 (+)
ncam3 LOC104959682 coding upstream 404237 12842761 ~ 12848460 (+)
rspo3 rspo3,LOC103353817 coding downstream 131346 13395438 ~ 13411921 (+)
LOC120561886 LOC103353818,LOC102295432,LOC102785128,LOC101482972 coding downstream 150232 13414324 ~ 13418452 (+)
LOC120562882 LOC104926221,LOC103388613,LOC103353832 coding downstream 345526 13609618 ~ 13621344 (+)
zgc:110410 LOC104941306 coding downstream 794548 14058640 ~ 14068948 (+)
LOC120561614 NA coding downstream 1319943 14584035 ~ 14588452 (+)
G72242 NA non-coding upstream 43663 13208828 ~ 13209034 (+)
G72199 NA non-coding upstream 128170 13119637 ~ 13124527 (+)
G72198 NA non-coding upstream 132596 13112215 ~ 13120101 (+)
LOC120562936 NA non-coding upstream 306709 12896310 ~ 12945988 (+)
LOC120563130 NA non-coding upstream 401620 12848475 ~ 12851077 (+)
LOC120562636 NA non-coding downstream 181774 13445866 ~ 13448239 (+)
G72309 NA non-coding downstream 207659 13471751 ~ 13473470 (+)
G72314 NA non-coding downstream 211278 13475370 ~ 13483111 (+)
G72319 NA non-coding downstream 268033 13532125 ~ 13533002 (+)
LOC120561831 NA non-coding downstream 822511 14086603 ~ 14087796 (+)
hint3 hint3 other upstream 2587 13245668 ~ 13250110 (+)
G72204 ctnnb1,LOC103388302 other upstream 126800 13124934 ~ 13125897 (+)
LOC120562335 NA other upstream 479258 12760817 ~ 12773439 (+)
LOC120563165 scx other upstream 523471 12711602 ~ 12729226 (+)
LOC120561922 NA other upstream 1542439 11708381 ~ 11710258 (+)
prelid3a prelid3a other downstream 204119 13468211 ~ 13471516 (+)
LOC120562530 ext1,LOC103135121 other downstream 295668 13559760 ~ 13606245 (+)
LOC120562711 eif3h other downstream 360356 13624448 ~ 13688514 (+)
LOC120561928 csmd3,LOC101478087,LOC108232275,LOC102799137,LOC102309299,LOC102195523 other downstream 489961 13754053 ~ 14046136 (+)
cmc1 cmc1 other downstream 869492 14133584 ~ 14144296 (+)

Expression


Co-expression Network