LOC120562733 (LOC100705529,LOC103366949,LOC102296000)


Basic Information

Item Value
gene id LOC120562733
gene name LOC100705529,LOC103366949,LOC102296000
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 19459555 ~ 19477316 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039806598.1
TTCCTTTTTGGGGCTGTCCGGCTCACCAGATGTTTCCTGAAACCACTGTGTTCCTAACTCACTCCCCTCTCCAGTGGTGAAAAGCAAgggaaggacagagagaggagagggagagggagttTGTCACTCACTCTCAGTAAAGCCAAGGACAGAGAGATACCTGGAGTCCAACTGGTGAAGTcttttttgcgtgtgtgtgcgtctctgctACAGCGCTGACCAAGGCATACGACGACTGGGATGTACTACTTTGGCTGCAGTGTAGACTCTGTATCTCACCTGGACAACATAAgcagaaacacatacagtacatacattcaTTTTTGAGCTGCTCACTTCCTCTTACACCTTTTTTGAGAGTATTGTGAGCTCACAGGCAGGAGTCCTGCTCTTTTACCTGGTGGACAGCCAGTAGTAGGTGAGCCGGTGATGTCGTGGGACTGTGGCCTGAGGTACATGTTCTCTGTGCCACCTGTGCTGCAGCAGGGCAGCATGTGTATCCTGCATGACAAGGAGGACCTGTCCAGACTGGAGATGGTCCAGAAATTGGCCAAGGATGGCTGCCGCTTCCTGCAGACCCACAGCAAGGGCCCAGAGAGGACAAGTGAGCCCCAGAGTGACGAGGCAGCCCGCGTGTGTCTGAGGGAGAGGGGCCACGATGTGCTGGTTCTCCAGAGAATATCGTCAGAGCAGCCAGCCCTCTCTGCATCTgcgaggggaggagggagagaggaggctAGGAACAGGAGGTACGTGGTGGTATCAGGGACCCCGGAGAAGATCCTGGAGCACTTGCTGAATGACCTGACACTAGATGACGATCAGGGGACAACACAGGGCAAAGAGTCAGATACACTTCTGGATGATTTTCTGCTGACCTACCCAGTGTTCATGTCAACCAGTGATTTATGTCAAGCTCTGCTGGGACACTATTGCACCAAGCGATACAGAgggaaagaggacaggaaagAGGCACTGGAAAGGAAACAAAAAGTCCTGCACCTGGTGTCACAGTGGATGGCCCTGTGCAAAGACTTCCTGAGGGAAGACGAGCATGTCAAACTGTTTATGAAGAGTTTGTACCGTTACATATTGGATGATCTCTATGAGCACCCAGCCCTGGAGACGGATGTGAGGGAACTGCAGAAACTGTACCAGCTGCATCGCAGACATACGGTGGATGAATATTCCCCTCAAAGAAAGAGCAAAGCACTGAAAGAGAACGGGCTCCACTCCAGAGGCACACAGAGGGAGACCAAGGAAGTGCTGTGTCACGTGTATATTACCATGGACTCGTACCTGAGTATGAGGACCCATACTGGGGTAGTGGCCCAGGAGCTGCTGCAGGCCGTGGCAGAAAGGATGGATGTCCCACTGAGGGAACTGGTGCTAGTGGCCGTCACTTACCCTGGAGGGAGGCTTCTTCTGCAGCCTCTGGACAGAGTTTTCTCTGATTCTGTACGGCCGGTGGGGAGGCTGCATGTGTGCAGGAAGGACCTGGGTGAAGTCCTGAACCCATTTACAGACAACTCAGAGCTGCAACAGAGAACAGCTCGCATGCTCAGTTTAAACACATGGGACGTGGCCGTTGCTCTCACCAACTTTGACTGGACCATCTTTGACTCAATACACGAGCAAGAACTCGTCTATTTCACCTTCAGCCGCCACAGTAGCAGTAGCCACACTGTGgcgctggagctgctgctgcagcgctTCAATGAAGTCCAGCTGTGGGTGATGACAGAGGTGCTGCTGTGCCCAACGCTCTGCAAAAGGGTCCAACTCATCAAGAAGTTCATCAAGATTGCTGCCCACTGTAAAGCACAGAGGAACCTCAACTGTTTCTTTGCCATTATAATGGGCCTGAACACTGCAGCTGTTAGCCGCCTCAGTCAGACATGGGAGAAAATTCCTGGGAAATTCAAAAAGCTGTTTTCAGAGCTGGAGACAATTACAGATCCCTCGCTGAACCACAAGGCCTACAGGGACTCCTTCAAGAAGATGAAGGCGCCAAAGATCCCCTTCCCTCCTCTGCTACTGAAAGATATTACGTTCATTCACGAAGGCAACAAGACGTTTCATGATAATCTGGTCAATTTTGAAAAGCTGCACATGATAGCAGACACAGTGCGTCTCATCCGGCAGTGTCAGAAAGATCACATGGGTAATGGCATCACCCAGAAAAGCAGCTCAGAAGTGCGAGCCTACATTGATTACCTGCATATCATCGACAATCAGCAGACTCTGTTTGAACTGTCACACAGGCTGGAGCCTCGTGCTTAGAGAGCAGCTCTAACTTACTTCCCACTGTGTCAGCCAGACTGTGGGATTGCCAAGGAACAATTTATCTCTGTCTCACCTATCTCTCAGGACTCAGTCGGCAATCAGAGGACGCTGCATGATCCTGGCCGACCACAGGAGGGAGCCGCCCAATCAGGAAACTCTCACCAGAGACGGGGAATAAGCAGAAAaaaacttaaaggtgcactatgagtttctgcatggtttcagcgcaatttcttttttgtctcaaattgtaggcatctctccttgatccgctagctgcctgccccctgaatacactgtg
>XM_039806599.1
gcaggaggaggacggGGATGACGAGGAGGGCTCCGAGGAGAGCAGCAGCGACAGCACCAGCCGGGCAGAGCCGGTACGTGGTGGTATCAGGGACCCCGGAGAAGATCCTGGAGCACTTGCTGAATGACCTGACACTAGATGACGATCAGGGGACAACACAGGGCAAAGAGTCAGATACACTTCTGGATGATTTTCTGCTGACCTACCCAGTGTTCATGTCAACCAGTGATTTATGTCAAGCTCTGCTGGGACACTATTGCACCAAGCGATACAGAgggaaagaggacaggaaagAGGCACTGGAAAGGAAACAAAAAGTCCTGCACCTGGTGTCACAGTGGATGGCCCTGTGCAAAGACTTCCTGAGGGAAGACGAGCATGTCAAACTGTTTATGAAGAGTTTGTACCGTTACATATTGGATGATCTCTATGAGCACCCAGCCCTGGAGACGGATGTGAGGGAACTGCAGAAACTGTACCAGCTGCATCGCAGACATACGGTGGATGAATATTCCCCTCAAAGAAAGAGCAAAGCACTGAAAGAGAACGGGCTCCACTCCAGAGGCACACAGAGGGAGACCAAGGAAGTGCTGTGTCACGTGTATATTACCATGGACTCGTACCTGAGTATGAGGACCCATACTGGGGTAGTGGCCCAGGAGCTGCTGCAGGCCGTGGCAGAAAGGATGGATGTCCCACTGAGGGAACTGGTGCTAGTGGCCGTCACTTACCCTGGAGGGAGGCTTCTTCTGCAGCCTCTGGACAGAGTTTTCTCTGATTCTGTACGGCCGGTGGGGAGGCTGCATGTGTGCAGGAAGGACCTGGGTGAAGTCCTGAACCCATTTACAGACAACTCAGAGCTGCAACAGAGAACAGCTCGCATGCTCAGTTTAAACACATGGGACGTGGCCGTTGCTCTCACCAACTTTGACTGGACCATCTTTGACTCAATACACGAGCAAGAACTCGTCTATTTCACCTTCAGCCGCCACAGTAGCAGTAGCCACACTGTGgcgctggagctgctgctgcagcgctTCAATGAAGTCCAGCTGTGGGTGATGACAGAGGTGCTGCTGTGCCCAACGCTCTGCAAAAGGGTCCAACTCATCAAGAAGTTCATCAAGATTGCTGCCCACTGTAAAGCACAGAGGAACCTCAACTGTTTCTTTGCCATTATAATGGGCCTGAACACTGCAGCTGTTAGCCGCCTCAGTCAGACATGGGAGAAAATTCCTGGGAAATTCAAAAAGCTGTTTTCAGAGCTGGAGACAATTACAGATCCCTCGCTGAACCACAAGGCCTACAGGGACTCCTTCAAGAAGATGAAGGCGCCAAAGATCCCCTTCCCTCCTCTGCTACTGAAAGATATTACGTTCATTCACGAAGGCAACAAGACGTTTCATGATAATCTGGTCAATTTTGAAAAGCTGCACATGATAGCAGACACAGTGCGTCTCATCCGGCAGTGTCAGAAAGATCACATGGGTAATGGCATCACCCAGAAAAGCAGCTCAGAAGTGCGAGCCTACATTGATTACCTGCATATCATCGACAATCAGCAGACTCTGTTTGAACTGTCACACAGGCTGGAGCCTCGTGCTTAGAGAGCAGCTCTAACTTACTTCCCACTGTGTCAGCCAGACTGTGGGATTGCCAAGGAACAATTTATCTCTGTCTCACCTATCTCTCAGGACTCAGTCGGCAATCAGAGGACGCTGCATGATCCTGGCCGACCACAGGAGGGAGCCGCCCAATCAGGAAACTCTCACCAGAGACGGGGAATAAGCAGAAAaaaacttaaaggtgcactatgagtttctgcatggtttcagcgcaatttcttttttgtctcaaattgtaggcatctctccttgatccgctagctgcctgccccctgaatacactgt

Function

NR:

description
PREDICTED: rap guanine nucleotide exchange factor 5

GO: NA

KEGG:

id description
K08019 RAPGEF5; Rap guanine nucleotide exchange factor 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039806598.1 True 2587 mRNA 0.51 18 19459555 19477316
XM_039806599.1 False 1910 mRNA 0.51 17 19465734 19477315

Neighbor

gene id symbol gene type direction distance location
LOC120561621 LOC105018833 coding upstream 13438 19440837 ~ 19446117 (+)
slc6a19b LOC104965566 coding upstream 19322 19434690 ~ 19440233 (+)
rxrbb LOC104965568,LOC103368225,LOC101470553,LOC100711502 coding upstream 119841 19328950 ~ 19339714 (+)
LOC120563155 NA coding upstream 178933 19278315 ~ 19280622 (+)
LOC120562959 NA coding upstream 189786 19245358 ~ 19269769 (+)
sp8b sp8,LOC101158882,LOC104926695,LOC101468530,LOC107378685 coding downstream 100236 19577552 ~ 19582754 (+)
macc1 macc1 coding downstream 112787 19590103 ~ 19595355 (+)
twist1b twist1,LOC100712142,LOC103366955 coding downstream 134430 19611746 ~ 19613152 (+)
ankrd28b ankrd28 coding downstream 197827 19675143 ~ 19693798 (+)
hacl1 hacl1 coding downstream 217599 19694915 ~ 19700987 (+)
LOC120562732 NA non-coding upstream 2939 19453769 ~ 19456616 (+)
G73606 NA non-coding upstream 139507 19319438 ~ 19320048 (+)
G73586 csnk2b,LOC102207154,LOC106573472,LOC101175345,LOC104925497,LOC102778826 non-coding upstream 183039 19272727 ~ 19276516 (+)
LOC120562631 fxyd7,LOC103388498 non-coding upstream 296751 19159464 ~ 19162804 (+)
LOC120562629 NA non-coding upstream 300537 19158475 ~ 19159018 (+)
LOC120562701 NA non-coding downstream 137187 19614503 ~ 19625611 (+)
G73776 hdac9 non-coding downstream 157557 19634873 ~ 19639459 (+)
G73836 NA non-coding downstream 342919 19820235 ~ 19820591 (+)
G73871 NA non-coding downstream 541793 20019109 ~ 20052006 (+)
G73881 NA non-coding downstream 563555 20040871 ~ 20046380 (+)
si:ch211-254p10.2 LOC102209663,LOC101158134,LOC102295699,LOC101064473 other upstream 6272 19447167 ~ 19453283 (+)
hcst LOC104925504,LOC104961397 other upstream 267453 19190020 ~ 19192102 (+)
G73570 LOC103371659 other upstream 300560 19148613 ~ 19158995 (+)
kmt2bb kmt2b other upstream 597597 18833245 ~ 18861958 (+)
proser3 NA other upstream 630867 18819201 ~ 18828688 (+)
G73779 hdac9 other downstream 169659 19646975 ~ 19649511 (+)
LOC120561838 tppp other downstream 715374 20192690 ~ 20209327 (+)
si:ch211-257p13.3 kifc3,LOC102783047 other downstream 737272 20214588 ~ 20226991 (+)
gra NA other downstream 845014 20322330 ~ 20325961 (+)
glipr2l glipr2 other downstream 1123007 20600323 ~ 20605165 (+)

Expression


Co-expression Network