ddx61 (LOC104962676,LOC102800138,LOC100698984,LOC101488107,LOC104927343)


Basic Information

Item Value
gene id ddx61
gene name LOC104962676,LOC102800138,LOC100698984,LOC101488107,LOC104927343
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 25422850 ~ 25436271 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039806604.1
AAACGAGCGCGCGGCCATGTTGAATTGTCGATATTCCGAAAGAAGAGACAAAAGAGTGAAAACTCGGTGGATTTCTCGAAACAGTCTGTAGTTACCGAACTTAATTAAACTGTCGAAGAAACGTTAAGCAACGACGCAACAGGGAAGCTTGTTGGTGGATGTAGCAATGTGTAAcctggattttttttgttgatcgGCAATTCCCAAAGCACTTTGCAGACTGTCATCTCAAACTTTTGCTGCAGAAGTAAACGAAACCGGAACAAGATAACCACAGACATTTAAAGTGGACTGTCCATGTTAAAGACACAATTGCTGGAGTTACTTTTTTGAGCCAGTTTTGAGCCCCAgcaaagacatttgaagactttTTGATGTCAAAGGAACAAATCCTAAAAATAGTCAGACGTGACGAAGCAGATCATATTTTACTACTGGCCATTTTGAATGTATAAACGAAGCACTTGGACTTAAAAAGCCAAGATACTCGAAGGACACAAAAAGACAATTCTGGATCATTGTTACAGCAAGGATAAGAGTACTCTGACAAACAATTTTGAAACGGAGTATGTTTTGGTCAcataattgatttatttattcatatgaATGTTAATTTCTCCCTTTTTTGGAGAGTTGTCTTGTAAATAGACAGAATTCATAAGCAGACCTCTTCTTTTCAAGAGGCCTGTACGTCAGATAGTGTACACAAtacattctttaaaaaaaagaaacttttttttttttattattatttcagcttttagttgttttttacaCTGGTGCATTAAGCAAGATATCAGTAAAAGAGGCACACTGAGGCACATATAACACACTGAGGAAAAGTGCCAGTTATTGTGATGGCTACAGCAAGAACGGCAAACCCAGCACAGATGATTGGATTGAACAAACCAGCAAATGGGCAactcagaggacaggcagcactTCTTGCAGCTGCCCAACAGTCCAGTGCCCTCCAGAAAAGGACCAGCATTCCTCAAAGCAGTGGGGGCATCAAGTTTGGTGATGACTGGAAGAAGTGCCTGGAGCTTCCTCCAAAAGACACCAGGATGAGAACCGCGGATGTGACATCAACTAAGGGAAATGAATTTGAAGACTACTGCCTAAAGCGGGAACTGCTAATGGGAATCTTTgaaatgggatgggagaaaccGTCCCCTGTCCAGGAGGAGAGCATCCCTATCGCTTTGTCAGGCAGAGATATTTTGGCTCGGGCCAAGAATGGCACGGGAAAAAGTGGAGCCTACCTCATCCCTCTCCTGGAGAGGATAGACCTGAAGAAGGATCACATACAGGCCATAGTTATGGTGCCAACAAGAGAGTTGGCCCTGCAAGTGAGCCAGATCAGCATTCAGCTCAGTAAGCACCTAGGAGGGGTTAAGGTCATGGCTACCACGGGTGGCACCAACTTGAGGGATGACATCATGCGTCTTGATGAGACAGTGCATGTAGTGATTGCTACACCAGGCAGGATACTAGACCTGATCAAGAAGGGTGTGGCGAAAATGGATAAGGCCCAACTGATTGTGATGGATGAGGCAGATAAACTGTTGTCCCAGGACTTTGTGGTCCTGATTGAAGATATAATCAGCTTCATGCCAAAGGACCGTCAGATCCTGCTTTACTCTGCCACTTTCCCAATCAGTGTGCAAAAATTTATGAACAAACACCTGAAGAAGCCTTATGAGATCAACTTGATGGAAGAACTGACCTTGAAGGGCATTACTCAGTACTATGCCTATGTGACTGAAAGACAGAAGGTCCACTGCCTCAACACACTCTTTTCTAGGcTTCAGATCAACCAATCTATCATCTTCTGCAACTCCACCCAGAGAGTTGAGCTTCTGGCCAAGAAAATCACCCAACTGGGTTATTCATGCTTCTACATTCATGCAAAGATGATGCAGGAATACAGGAACCGTGTGTTCCACGACTTCAGGAATGGATTGTGCAGAAACTTGGTCTGCACAGATCTATTCACTCGGGGAATTGACATTCAGGCAGTAAATGTGGTCATCAACTTTGACTTCCCAAAAAATGCAGAGACCTACCTGCACCGCATTGGCAGATCAGGGCGTTTTGGTCATCTGGGTTTGGCCATCAATCTGATAACTTCAGAGGACCGCTACAACCTGAAGAACATTGAGGATCAGCTTGTCACGGACATAAAGCCCATCCCCAGCAGCATTGATAAGAGCCTGTACGTGGCAGAGTTTCACTCGGTTGACCCAGATGATGATGAGAATGACTATGATGACCACGGTGGAGCCAAAAACAAGGAACTGGGAGGAATCTGAGTGACTGgaGAAACGCGGCGCCTGGCATTCATGACACAATATTGGCTATGCATCCCACAAGATTCCAAGTCATGATTTCTGTTCCCTAGTTTGTCACCCAAATGGTCTATTTTAGGTTTCTTTTCATTCCCATTTATAGTCTACAGCAATCTCCAGTTCTGTCTGTGCATATGTTAAACTGGTATCTTCCCACTGCCACTTCAATCAGTTGATCTTTCTGCCACACTGCCAGAGATGGTCACTGTACATGTGATTTGGGCTTTTGCTTAAGtctgtcattgaactcagccaCTCTTGACAATAGATGGACATTGTCAtcgattgtttttttgttttgtattttggtaCTTTGCTGTAAGAATGAAAATGTGAAACCAAAGGTAGATTTGGAGGATAGAGCCCTGCTCACGTCCTTGCTGTGCAGATGAACTACATATGGCAGTGTGCACGTCCTTCTGCCATTCCTTTTGAGCAGATGCTTTAAAGGAAActccttttttaaacaatttacaCTCAGTGGCTACTTTATTTAGATGGCCTGAATCTTTTTTTGTGCCAtggattcaacaaggtgctggaaacatTACTTAGACAAGTTCATGTTGAGATGATAGCCTCATGCAGTTGCTGCAGATTTGTCAGCTGCCCATTCATGCTTCACATTTTGTGTTTAACCCCATCGTAAACGTGTTGAATTGAGATCTGGAGACTATTTCAGTAGactcattgtcatgtttgaGATACTGTGTTTTGTGATGTGGCATGATGTTCTGCAAAGAGATGGCGATTAGAAGATGGTTGGActgtggtcataaagggatgcaCATGGGACAGGAACAATACTCAAGACTTTTGCGTTTAAACGATGCTCGGTTTGTATTGAATGGGCAAAAGTTAACATTACACCGCCACCATCAGCCTGAAATGTTGAATTCATCtttacaccaaattctgacCCTACCATGTGCCTCTTGCAGCAGAACTCGACATTCAaaagaccaggcaacatttttccaatCATCTGCTGTGCGGTGTTGGTGAGCCTGTCTACTCTTGCTTCAATTTTCTTTGTCTGCATACCTCTGCTGTAACATGGTTATTTGTTACGGTCTCCTTCCCGTCAGCTTGAACCAGTCTGGCCATTCTCCTCATTAACAAGGCACTTTTGCCCTCACAGCTGCCATGCGTGGgatgttatatttttttgtttgtttgtgtgtgcctgtaaaCCCTATAGACTTGTATGTGAAAATCCCAGGAGATTAGCACCAGCAATCATTCCACTGGCAGTCACTTAAATCACATTTCTTCACTATTCTGATGTTTGGTCAGAACAACTgaatggtttgaccatgtctgCATGCTTTTATGCATTGAGTGGCTGATTTAGATACTTGCATTAATTAGGAGTTGTACCTAATAATGTGGCCACTGAGTTAAGCTTTTGTTATCATTCCGTCTTggtcataaaaaaacattttgcccACCAAAACTTGGGGATGCAGTGGTAAAATGAGGTACATTGTACACACATCCATAGTCTAACAATATTAACATCCTTCAAAAGGTAACCAAAGTTGGAAGAATAGACAGAATTATTTAAGTAAGAATAGAGATGGCTTCATAAACCAAAATGACCACTTTGCTCCGACTGACTAAAAGAGGGCTGCTATGGTGCTCCAGCACAGAGCACCTGAAACAGTGTTGCTGATAGTCAACTTGCTAGTTTTttcatattatagtatttaCTACAGAACATTTAAATATGACAGTGTAATGTCAGACACTACAGTGCATTTTGTCAAAGCACAGATCCAATAGTGACCATAAGTCAGTATTTAATTGTgaaatttcttttgtttcctttttaagCCATAGCACCAGGCAGCATTTTCTCAGGTATTGAGGTTATCAGTAATTAACAAGAGGGGCCTAGATTCTGAGTCCCTTCTTCCCTCCAAAGTGCCTTAGTCTAACGTCAAACCTGTACTTAGCCCAGGCTCTTGTCCCGAGATTGTATTGAAGGTAAAATGGCACCCAAATGATTTCTTATTAGTTTATCAGTTTTGAAAGCACAGTTATAGTCTGAAGGATTTGCAGTTTTCCTTATTTGTAAGAAATGCATTTGTCTCATGAGGAATTGTAAACATGACACATGATTGTGTGACTATATTACATCATTGGACTTATTGACTTCAGCACaaaaaatacatgtatttaaaatttaaaacaatACTGTGAAATTTTCAGCTGACTTTTTCTTGGCTGACCATTACGTTACTGCCAAGCACCAGCAGGGAAGGGACCCATGTGTGTGCCCTCTTCTAAAGCATCTGAAGTAGTAATTAGCCCTAACTTTAATGTCGAACTCTGCAGTACCCTTGTTGATAGATTTTGGTTCCCTAATTCTTTTAGCCTCAGTGCAGGCAACAGTACATGACCATTTTCTGAGTGGATTTGTAACCTGAGACCATTTGTTCCATCACTGTATTTTGAAGAAATTAATACCTTCATGACTTGATGTCCAGATGCTTTAAGTAGACAGACAGCCAACAATTTTCTGTTAAATGTGTCCATGCCAGCGcctaaaacaaattaaagtctAACTGACTAAC

Function

NR:

description
PREDICTED: probable ATP-dependent RNA helicase ddx6

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K12614 DDX6, RCK, DHH1; ATP-dependent RNA helicase DDX6/DHH1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039806604.1 True 4930 mRNA 0.42 13 25422850 25436271

Neighbor

gene id symbol gene type direction distance location
bcl3 bcl3 coding upstream 278 25400240 ~ 25422572 (+)
LOC120561673 LOC108235490,LOC102233864,LOC107379681 coding upstream 51794 25368329 ~ 25371056 (+)
LOC120561675 trypsase,LOC103389000 coding upstream 60537 25360758 ~ 25362313 (+)
LOC120561668 LOC105939654 coding upstream 64991 25348120 ~ 25357859 (+)
tmem145 tmem145 coding upstream 78158 25294256 ~ 25344692 (+)
tomm40 tomm40,LOC106917673,LOC103139243,LOC107083531 coding downstream 567 25436838 ~ 25443829 (+)
LOC120562741 NA coding downstream 42990 25479261 ~ 25480707 (+)
apoeb NA coding downstream 49288 25485559 ~ 25487892 (+)
apoc4 NA coding downstream 59447 25495718 ~ 25496646 (+)
apoa2 NA coding downstream 61419 25497690 ~ 25499464 (+)
G75977 NA non-coding upstream 75634 25346263 ~ 25347216 (+)
LOC120561670 NA non-coding upstream 86892 25335016 ~ 25335958 (+)
G75943 NA non-coding upstream 278046 25144579 ~ 25144804 (+)
G75942 NA non-coding upstream 278576 25144058 ~ 25144274 (+)
G75941 NA non-coding upstream 307093 25115556 ~ 25115757 (+)
G76055 NA non-coding downstream 106128 25542399 ~ 25596454 (+)
G76083 rps19,LOC106942871,LOC103477840,LOC102304814,LOC102192408 non-coding downstream 169879 25606150 ~ 25617478 (+)
G76089 NA non-coding downstream 188159 25624430 ~ 25701085 (+)
G76109 NA non-coding downstream 366241 25802512 ~ 25804190 (+)
G76113 LOC101165095,LOC108235336 non-coding downstream 385342 25821613 ~ 25822239 (+)
LOC120561674 LOC104943405,LOC103477911,LOC108235491,LOC108235490,LOC102233864,LOC107379681 other upstream 42052 25374207 ~ 25380798 (+)
LOC120561858 NA other upstream 426541 24915254 ~ 24996309 (+)
grik5 grik5 other upstream 537477 24806289 ~ 24885373 (+)
dedd1 dedd2 other upstream 888574 24520735 ~ 24534276 (+)
G75644 NA other upstream 986031 24435139 ~ 24436819 (+)
apoc1 NA other downstream 55513 25491784 ~ 25493262 (+)
apoc2 NA other downstream 66329 25502600 ~ 25504052 (+)
taf12 taf12 other downstream 356547 25792818 ~ 25795519 (+)
G76192 NA other downstream 703630 26139901 ~ 26142627 (+)
LOC120562432 LOC101064911,LOC106524684,LOC104919574,LOC106098620,LOC102206486,LOC108235477,LOC102229209,LOC108166993 other downstream 1209113 26645384 ~ 26647615 (+)

Expression


Co-expression Network