tomm40 (tomm40,LOC106917673,LOC103139243,LOC107083531)


Basic Information

Item Value
gene id tomm40
gene name tomm40,LOC106917673,LOC103139243,LOC107083531
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 25436838 ~ 25443829 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039806605.1
GGATGAGTTACGGAAAATAGGCGGGCATTTGTCAACCACGGACGTTGTGGTGAACTTTGCCGGTGTTGAACTACCCCTGGACCCTTACTGTCAGCTCTGTTACAGTCTGAGTATGGGCAGTGTGTTGGCAGCTGCCCCACCCAGTCCTGCCCCAGCTGCAGCTGGAGGTAGTCAAGGGGTCCCAGGGTTGGTGTCCGTCCCTCCAGGGTTCACTATGCCCTCAGTGTCTTCAGTCCCTCCAACATCTGGATCTGGCCAGCAGTCCGCAGATACAGATTCCCCACTCCCAAATCCAGGCACATATGAGGAGTGCCACCGCAAATGTAAAGAGGTGTTCCCTCTGCAGATGGAAGGGGTGCGATTAGTGGTGAACAAGGGCCTGAGTAACCACTTCCAGGTCAGCCATACTGTTACCCTCAGTACCCTTGGGGATTCTGGTTATCGATTTGGTTCCACCTACGTAGGCAGTAAACAGACTGGACCAGCAGAGTCATTCCCAGTCATGGTTGGAGATATGGACAATACTGGTAGCCTGAATGCCCAGATCATCCACCAGCTCACGTCTGCTGTGCGCTCCAAAATAGCCATCCAGacTCAACAACACAAGTTTGTGAACTGGCAGTGTGAAATGGAGTGTCGTGGTGAAGATTTTACCGCTGCTGTGACTCTCGGAAATCCAGATGTACTTGTTGGATCtgGCATTTTGTTGGGCCACTATCTCCAGTCTATCACACCAGCTCTGGCTCTGGGTGGTGAGCTAGTGTACCACAGGAGACCAGGGGAGGAAGGAGCAGTCACCTCCCTCTTGGGCAGGTACACAGGGGACAACTACGTTGCTACATTGACTTTGGGAGGGGCAGGCGCCCATGCCACATACTATCACAAAGCCAGTGATCAGTTGCAGGTAGGAGTTGAATTTGAAGCAAGCACAAGGATGCAAGACACCACAGCATCTTTTGGTTACCAGCTGGACGTTCCCAAAGCTAACTTCCTCTTTAAagGCACAGTTGACAGTAACTGGGTAGTTGGGGCGACCCTTGAAAAGAAACTGGTGCCGCTACCTCTCACACTGGCCCTCGGGGCTTTCCTCAACCATCGCAAGAACAAATTCCAGTGTGGCTTTGGTGTCACCATTGGCTAGACGTGCAGGGCTGCCTGGAGCCAGCTCGCAGGTCACAGCTTGGAccagcacagagacacacaggaaccTGGACTAAGTTTTAGAAATTGGATTCAGAGACTCTCCTATAACTGTGATTTCTGGGCCAGatagagagacaaagacaactACCAAGGAGCCAGGACTGGCCAAGCCATGCCTTCATTCTGTAGCCCAAATGTCTTTCTTTTATGGTGTATTGGATATACCCAGAGGCTAGAGTGATGAATGTCAGTGGGCATGAGGACATGCGATGTGAAAATCAAAGTAAGTGGTTAGACATAATATATGGTGGTCATGTATgatgattaaaataaatgtgatttaCTTTTTGTAAAAGTGAa

Function

symbol description
tomm40 Predicted to enable protein transmembrane transporter activity. Predicted to be involved in protein import into mitochondrial matrix. Predicted to act upstream of or within protein transport and transmembrane transport. Predicted to be located in mitochondrial outer membrane. Predicted to be integral component of membrane. Predicted to be part of mitochondrial outer membrane translocase complex. Human ortholog(s) of this gene implicated in cerebral infarction. Orthologous to human TOMM40 (translocase of outer mitochondrial membrane 40).

NR:

description
PREDICTED: mitochondrial import receptor subunit TOM40 homolog

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0005741 mitochondrial outer membrane cellular_component

KEGG:

id description
K11518 TOM40; mitochondrial import receptor subunit TOM40

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039806605.1 True 1503 mRNA 0.50 9 25436838 25443829

Neighbor

gene id symbol gene type direction distance location
ddx61 LOC104962676,LOC102800138,LOC100698984,LOC101488107,LOC104927343 coding upstream 567 25422850 ~ 25436271 (+)
bcl3 bcl3 coding upstream 14266 25400240 ~ 25422572 (+)
LOC120561673 LOC108235490,LOC102233864,LOC107379681 coding upstream 65782 25368329 ~ 25371056 (+)
LOC120561675 trypsase,LOC103389000 coding upstream 74525 25360758 ~ 25362313 (+)
LOC120561668 LOC105939654 coding upstream 78979 25348120 ~ 25357859 (+)
LOC120562741 NA coding downstream 35432 25479261 ~ 25480707 (+)
apoeb NA coding downstream 41730 25485559 ~ 25487892 (+)
apoc4 NA coding downstream 51889 25495718 ~ 25496646 (+)
apoa2 NA coding downstream 53861 25497690 ~ 25499464 (+)
LOC120562605 LOC104951102 coding downstream 62622 25506451 ~ 25510293 (+)
G75977 NA non-coding upstream 89622 25346263 ~ 25347216 (+)
LOC120561670 NA non-coding upstream 100880 25335016 ~ 25335958 (+)
G75943 NA non-coding upstream 292034 25144579 ~ 25144804 (+)
G75942 NA non-coding upstream 292564 25144058 ~ 25144274 (+)
G75941 NA non-coding upstream 321081 25115556 ~ 25115757 (+)
G76055 NA non-coding downstream 98570 25542399 ~ 25596454 (+)
G76083 rps19,LOC106942871,LOC103477840,LOC102304814,LOC102192408 non-coding downstream 162321 25606150 ~ 25617478 (+)
G76089 NA non-coding downstream 180601 25624430 ~ 25701085 (+)
G76109 NA non-coding downstream 358683 25802512 ~ 25804190 (+)
G76113 LOC101165095,LOC108235336 non-coding downstream 377784 25821613 ~ 25822239 (+)
LOC120561674 LOC104943405,LOC103477911,LOC108235491,LOC108235490,LOC102233864,LOC107379681 other upstream 56040 25374207 ~ 25380798 (+)
LOC120561858 NA other upstream 440529 24915254 ~ 24996309 (+)
grik5 grik5 other upstream 551465 24806289 ~ 24885373 (+)
dedd1 dedd2 other upstream 902562 24520735 ~ 24534276 (+)
G75644 NA other upstream 1000019 24435139 ~ 24436819 (+)
apoc1 NA other downstream 47955 25491784 ~ 25493262 (+)
apoc2 NA other downstream 58771 25502600 ~ 25504052 (+)
taf12 taf12 other downstream 348989 25792818 ~ 25795519 (+)
G76192 NA other downstream 696072 26139901 ~ 26142627 (+)
LOC120562432 LOC101064911,LOC106524684,LOC104919574,LOC106098620,LOC102206486,LOC108235477,LOC102229209,LOC108166993 other downstream 1201555 26645384 ~ 26647615 (+)

Expression


Co-expression Network