apoeb


Basic Information

Item Value
gene id apoeb
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 25485559 ~ 25487892 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039806607.1
AATCAGCgccaaccccccaccccccacgcGCGGCAGCAGCAGTCTCCCGCCACTGTATAAAAGCCCTCAGTCACTGTTCAGGGAGCACGGAGGAAGCTCAACCTCTCAGGTGTATCTATCTGTCCAACAACCATGAAGACTGTAGCTCTGATCCTTGCTCTGACAGTCATCACTGGCTGCAATGCCCGTGCTGTGCTCCCTGATGCCACCCTAAAAAGCTGGGAGGACACCGTGGATCGTTTCTGGCAGTACGTCGACGAGCTGAACCAAAAAGCTGATGGAGTCGTACAGGAACTCAAGGCCTCTCAGCTCACCAGGGAGCTAGACACTCTGATCTCCGACAGCATGGCAGAGCTGGCAGTATACAGAGATGACATCCAGACCAAGCTGACCCCCTACACCGATAGCTCCACCGGCCAGCTGGCTCAAGACATGCAGCTTCTGGGCAACAAACTCCAGAAGGACATGCTGGATGCCAAAGAGCGCAGTGTTGAATATCTGGGTGAGCTCAAGACCATGATGGAGCAGAACACCGATGATGTCCGCAGCCGCATCAGCACCTACACCCACAAGCTGAAGAAGCGCCTGAACAAAGACACCGAGGAGATTCGCAACACTGTGGCCACCTACGTGGGTGAGCTCCAGTCCCGCACCTCCCAGAACATCGGCGCCGTGAAAGAGAATGTTGAGCCCTACGTCCAGCAGGCCACTGACACCGCATCCCAGAAGCTGAGTGACATCTCCACCATACTGAAGACCCAGGCTGATAACTTGGGCctgcagctggagacccaggctgAGGGCATCAAGACCCAGCTGGAGGCCACCGCCCAGGAACTGCGCACCTCCCTGGAAGGCAAGATCGACCAGCTGACCGACATGATCTCCCCCTTTGCCACCCAGATCCGTGAGCAGATTGAGAACATCATGGAGAAGGTCAAGGAGACCGCCGCTACCGCTGCATAA
>XM_039806609.1
ATGAAGACTGTAGCTCTGATCCTTGCTCTGACAGTCATCACTGGCTGCAATGCCCGTGCTGTGCTCCCTGATGCCACCCTAAAAAGCTGGGAGGACACCGTGGATCGTTTCTGGCAGTACGTCGACGAGCTGAACCAAAAAGCTGATGGAGTCGTACAGGAACTCAAGGCCTCTCAGCTCACCAGGGAGCTAGACACTCTGATCTCCGACAGCATGGCAGAGCTGGCAGTATACAGAGATGACATCCAGACCAAGCTGACCCCCTACACCGATAGCTCCACCGGCCAGCTGGCTCAAGACATGCAGCTTCTGGGCAACAAACTCCAGAAGGACATGCTGGATGCCAAAGAGCGCAGTGTTGAATATCTGGGTGAGCTCAAGACCATGATGGAGCAGAACACCGATGATGTCCGCAGCCGCATCAGCACCTACACCCACAAGCTGAAGAAGCGCCTGAACAAAGACACCGAGGAGATTCGCAACACTGTGGCCACCTACGTGGGTGAGCTCCAGTCCCGCACCTCCCAGAACATCGGCGCCGTGAAAGAGAATGTTGAGCCCTACGTCCAGCAGGCCACTGACACCGCATCCCAGAAGCTGAGTGACATCTCCACCATACTGAAGACCCAGGCTGATAACTTGGGCctgcagctggagacccaggctgAGGGCATCAAGACCCAGCTGGAGGCCACCGCCCAGGAACTGCGCACCTCCCTGGAAGGCAAGATCGACCAGCTGACCGACATGATCTCCCCCTTTGCCACCCAGATCCGTGAGCAGATTGAGAACATCATGGAGAAGGTCAAGGAGACCGCCGCTACCGCTGCATAAAGAAAGACTCTGATTTCTTAATACAAAGAGGGGGGGGGAGTTGAGAGATCCTGATGATACCTTCATGTGGGTGCTCTATTGTTTAGGATAAAAGGGGTTGATGAGATGAAGAAGGGGGGGATGAGGTGCGTCTTTTACAAAACAGCAGATAAACATCTAAACATTCTGCATAGTCACCTTTTCTTCTCTTATCAACTCCCTTGATCACTGAACACAAGCGCCCCATTCAATAACAGCACAAACAGGAGACAATTATTTGTAATATGCTTAGCTTTTCTACTGATCTAGCTGTCTATCCCGCCCTCACAAGGTTTTGTATTTAGTTTTCTACATTTTGTTTGGTTGTAAATATAACTGCTAAACCTCATAGGCAGGGATTGGTAGGGATATAATCCCCAAATGCACCAAACACAAGTGTCTTTCATTTCAATAAATGTACTCAATGATGATGATCAAAAGATGGAGGCACCTACTGTAATGTCTGCTCAGTGAACTGTATTTGTCTGCATGTCTTCTCGTGCTGCACAGAGAAGTGGAATGTAAAACGACTTGATGCATTTCTGACAATCAATGAGTGTAATGCTGCCTGTCTGTCCTTCAGTCTGACTATAGGGTGTCCCTTGTGTGTCACGTGTCATATGCCCACTATGCTGCTCACTGTATGCGCACTGCCAAGTGTGCTGAACAGTGCTGAGTGAATAAAAAACCTAGAAAATA

Function

NR:

description
PREDICTED: apolipoprotein Eb-like

GO:

id name namespace
GO:0042157 lipoprotein metabolic process biological_process
GO:0006869 lipid transport biological_process
GO:0005576 extracellular region cellular_component
GO:0008289 lipid binding molecular_function

KEGG:

id description
K04524 APOE; apolipoprotein E

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039806607.1 False 966 mRNA 0.57 5 25485559 25487175
XM_039806609.1 True 1551 mRNA 0.49 4 25485928 25487892

Neighbor

gene id symbol gene type direction distance location
LOC120562741 NA coding upstream 4852 25479261 ~ 25480707 (+)
tomm40 tomm40,LOC106917673,LOC103139243,LOC107083531 coding upstream 41730 25436838 ~ 25443829 (+)
ddx61 LOC104962676,LOC102800138,LOC100698984,LOC101488107,LOC104927343 coding upstream 49288 25422850 ~ 25436271 (+)
bcl3 bcl3 coding upstream 62987 25400240 ~ 25422572 (+)
LOC120561673 LOC108235490,LOC102233864,LOC107379681 coding upstream 114503 25368329 ~ 25371056 (+)
apoc4 NA coding downstream 7826 25495718 ~ 25496646 (+)
apoa2 NA coding downstream 9798 25497690 ~ 25499464 (+)
LOC120562605 LOC104951102 coding downstream 18559 25506451 ~ 25510293 (+)
cited4b LOC104958901,LOC106523762 coding downstream 386785 25874677 ~ 25877640 (+)
LOC120563139 LOC106907557,LOC103141567,LOC106948827,LOC107084787,LOC103477829,LOC102227399,LOC102310127,LOC102211983 coding downstream 542871 26030763 ~ 26044380 (+)
G75977 NA non-coding upstream 138343 25346263 ~ 25347216 (+)
LOC120561670 NA non-coding upstream 149601 25335016 ~ 25335958 (+)
G75943 NA non-coding upstream 340755 25144579 ~ 25144804 (+)
G75942 NA non-coding upstream 341285 25144058 ~ 25144274 (+)
G75941 NA non-coding upstream 369802 25115556 ~ 25115757 (+)
G76055 NA non-coding downstream 54507 25542399 ~ 25596454 (+)
G76083 rps19,LOC106942871,LOC103477840,LOC102304814,LOC102192408 non-coding downstream 118258 25606150 ~ 25617478 (+)
G76089 NA non-coding downstream 136538 25624430 ~ 25701085 (+)
G76109 NA non-coding downstream 314620 25802512 ~ 25804190 (+)
G76113 LOC101165095,LOC108235336 non-coding downstream 333721 25821613 ~ 25822239 (+)
LOC120561674 LOC104943405,LOC103477911,LOC108235491,LOC108235490,LOC102233864,LOC107379681 other upstream 104761 25374207 ~ 25380798 (+)
LOC120561858 NA other upstream 489250 24915254 ~ 24996309 (+)
grik5 grik5 other upstream 600186 24806289 ~ 24885373 (+)
dedd1 dedd2 other upstream 951283 24520735 ~ 24534276 (+)
G75644 NA other upstream 1048740 24435139 ~ 24436819 (+)
apoc1 NA other downstream 3892 25491784 ~ 25493262 (+)
apoc2 NA other downstream 14708 25502600 ~ 25504052 (+)
taf12 taf12 other downstream 304926 25792818 ~ 25795519 (+)
G76192 NA other downstream 652009 26139901 ~ 26142627 (+)
LOC120562432 LOC101064911,LOC106524684,LOC104919574,LOC106098620,LOC102206486,LOC108235477,LOC102229209,LOC108166993 other downstream 1157492 26645384 ~ 26647615 (+)

Expression


Co-expression Network