LOC120562757 (LOC104947480)


Basic Information

Item Value
gene id LOC120562757
gene name LOC104947480
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 42532924 ~ 42539601 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039806644.1
ACAGAACTTTCATTGCAACGCCTAAAAATCAAGGAGAACACTCAGTCCTGCTAGCCCCAATGTTGAGGTGCAGGACAAAATGTCTAAAAGTTGCCCGGAGCTGCTGAGAGAAGCAGCAAATTTGATTGAGGAAGCTCTGAGCAGAAGTCCAACGGCTCCCAGCAGATACCGGCGTTCAATCACGTACACCTCTCCAAGgAGAGCTCACGTCCTGCCTCTGGTCCAGTCATCCCCTGCATCACTTGTCAGAAGGAAGTTCCCTTTTCAGAGATGAAGCTGCACAGATTGAGCTGCAATGGaaTGGAAGCTTATTAAAGAACCCACTCAAGCTGCCAAAGTTTTCAAAGGGAATCTGCTAAGGGAACATGCAACTGGGAAACCACTTAGAATGAAGATGGATGTAAGGGACTCTGAAGAGGACAGGGAACGGGAGCTTCTCTTATTCTATAAACAGCAGCAAGAATGGGCATGTCCACTTCATTGTACTCTGGTTGGTGATGTTGCTATCGGAGAGGGAGTGATGCGGTACTTTATGACAACAATCATATCCAAACTCCAGTTTGGATTCAGTCTAGATCTTGGAGGAATGGGCCGAACACTGCTATTTGAGGGTGAACCTGACCATCTTGTTCCAGCAGCATCAGAGGCACTTATTGAAAGTAACCTCTTCCGGGTTGCAGGAAGGATGTTGGCCCACACCTTTCTCCATGACAGTCCCCATGTCACAGGATTAAGTCCTGCTGTAATTCATGTACTGTTCAATGGGGACTCTGAAATGGCAACTGTTGATACAGAAGACTGTCCTGATCTGCACATCAGGAGCATCATAGAACTGCTTGAACATGAAGAACTTACACCGGAACAGAAGGACACAGTTTCAGATCTTTCCATGTCTTGGGATCTTCCGGCCGTCACCAAAACAAATCGGAGATGGCTGCATAACAAACTTCTACTCCATGCAGTTAAGGATTTGGGCTGTAATatgggtctgtctgtctcttacgTCGTTGGGAGGACCATGCGCCAAATTAAACAGTTGAGAAAGGGACTGAAAGATGTGATGGTATGACCCCTGCTGACATCTTGGCCAGATGTTGTCCCACTTCTTTTCCCCAAAATGGCTGAAATGCAGTTTACACCCCAGaTGCTCCTAGAAAAAAATCACATGGCCAGTTGAGGACAGTGATGATGAAGACTTTGACTTAGACACCACCTGCCGCATCACTGGCTTTCTAAGGATGTTCATTGAAATAGcTTCATCAGGTACTCTGGCCCAGCTGCTGACATTCTGGGTTGGCTGGGAGATGCTTCCTCCTGAACTGAGAGTGGAGATTTCTGGGGGAACCCTTCCTACGTCCTCCACATGCTTTGGAACACTAAAGCTGCCAGCTCATTTCAAAATCGACATGGACTTTGAGAAAGCACTTGTCGCTGCCATAAAAAGTACTGGATTTGGGCTTGTTTAAGTTTTTTCAGACAGATgtcaattagggctgggcaatgttTCAATATTATATCTATCGTGATataagactagatatcgtcttagattttgaagAAGTGTAATATCGTTACATGGTAAGTTTAGTCTTCTCCTGGTttcaaaggctgcattacagtaaagtgatgtcattttctgaatttaccagactgttctagctgttctattatttgcctttaaccacttagtcattatatccacattatgaTGGTTATTTATCCGAAATCTAAATGTGGAAGCTATTTTGTGAatgcaccaattgtcaaccttaCGATATCGttgcaatatcgacatcgaggtgtttggtcaaaaatatcgtgatatttgattttctccatattgcccagccctaatgtcaATGCATACACAGTTCAGATGAATTGACACAAGTTCAGTGTCTTTGAAAACATGAACACACTGTATtgacagtagtagtagtagtagtagtagtagtagtagtagtagcagtagttgacctttttttttattctacatattttttccatttactgaaatcaaactgTTCTGCACCTTCAGTGCTAACAGTACAGCATTCATGTTAGTCATTCTGTGGACCATAATGAGGAAGGAAGCTTCAAAGaaacagctttttttcccctttcttttTCGTTTTTTAAAAGGAAAGCAAACTTTCAGTTTTTCCTTGCTTGTTCtaacacaacaaataaaaacatggttTGGA
>XM_039806645.1
GGCTGTCCTGGAgcacaatagacagacggtggcagAATGCCCCGACACTTAAATGCAACTAACATGTAGgttaacagtgaacaatcagtgttggacctccagtctgttgagatgcctctccaaacgcagaaaccaagcgcaatcgcaccataaaacgttaagacacgttaagaaaaaagatcagtaTTTTGCCGTCATCCAATGACATGAAAACAAGtcatccacagcgatcagtagatccacagaGTCCCGGTGTAGCCAGCAAGGCCTCTACTAGCGTCATATTCACCagtcagctccaaacaggtgaacaaggtgaacttcgccgtttaaacaaagtggaatgaAACGTatcaaagtccaaatctacacaaaacgcacattcaattagtaagctgacaggTATGCAGCTAACATGCCAACTCACAATATGTCTCTCTGGAATAGATaactttattgttgttgttgttgtttgtttagaaTGGAAGCTTATTAAAGAACCCACTCAAGCTGCCAAAGTTTTCAAAGGGAATCTGCTAAGGGAACATGCAACTGGGAAACCACTTAGAATGAAGATGGATGTAAGGGACTCTGAAGAGGACAGGGAACGGGAGCTTCTCTTATTCTATAAACAGCAGCAAGAATGGGCATGTCCACTTCATTGTACTCTGGTTGGTGATGTTGCTATCGGAGAGGGAGTGATGCGGTACTTTATGACAACAATCATATCCAAACTCCAGTTTGGATTCAGTCTAGATCTTGGAGGAATGGGCCGAACACTGCTATTTGAGGGTGAACCTGACCATCTTGTTCCAGCAGCATCAGAGGCACTTATTGAAAGTAACCTCTTCCGGGTTGCAGGAAGGATGTTGGCCCACACCTTTCTCCATGACAGTCCCCATGTCACAGGATTAAGTCCTGCTGTAATTCATGTACTGTTCAATGGGGACTCTGAAATGGCAACTGTTGATACAGAAGACTGTCCTGATCTGCACATCAGGAGCATCATAGAACTGCTTGAACATGAAGAACTTACACCGGAACAGAAGGACACAGTTTCAGATCTTTCCATGTCTTGGGATCTTCCGGCCGTCACCAAAACAAATCGGAGATGGCTGCATAACAAACTTCTACTCCATGCAGACCATGCGCCAAATTAAACAGTTGAGAAAGGGACTGAAAGATGTGATGGTATGACCCCTGCTGACATCTTGGCCAGATGTTGTCCCACTTCTTTTCCCCAAAATGGCTGAAATGCAGTTTACA
>XR_005639821.1
cacactgtctgttgTTTGGCTGACCACAATGCGGATAAAATTCCAAGCGTACTGTTTAAAGCTGAACTTCTTACTTCAGGACTTGGAGAGcaaaaagtaacattttcaggGAATGACCACGATCCCATGGTTATAACAAATAAACTGATGGAAGGGGGAGGCTTTGAATTTCTAAAACTTGTAGGATCTACTCGCAGTCGAAATCTTGCATTGCTTCAGTGTCCCAGCACTGGATACACCCTTGCCTATCTGAAAGATCCATCGACGATGATTGGACAGGCTACAATCTACATACGTCCACTTCAACAGGATCTACCCTTAGATTGTgAGAGCTCACGTCCTGCCTCTGGTCCAGTCATCCCCTGCATCACTTGTCAGAAGGAAGTTCCCTTTTCAGAGATGAAGCTGCACAGATTGAGCTGCAATGGGACACCCAAGCAGGAATCAGAAAGAGAACAAGAGGGAGGCCAAGGTGAAGAAAATGATAGTGAGACAGCCCTAGTCAGTGACAGTGTTCCAGTGAGGCCTGAAACATCAGCTGAGAGTGCAGTAGTACCGGCAGTGATTGTCAACGAGGAGTTGGATCGCAAAGAAACACAGTGaaTGGAAGCTTATTAAAGAACCCACTCAAGCTGCCAAAGTTTTCAAAGGGAATCTGCTAAGGGAACATGCAACTGGGAAACCACTTAGAATGAAGATGGATGTAAGGGACTCTGAAGAGGACAGGGAACGGGAGCTTCTCTTATTCTATAAACAGCAGCAAGAATGGGCATGTCCACTTCATTGTACTCTGGTTGGTGATGTTGCTATCGGAGAGGGAGTGATGCGGTACTTTATGACAACAATCATATCCAAACTCCAGTTTGGATTCAGTCTAGATCTTGGAGGAATGGGCCGAACACTGCTATTTGAGGGTGAACCTGACCATCTTGTTCCAGCAGCATCAGAGGCACTTATTGAAAGTAACCTCTTCCGGGTTGCAGGAAGGATGTTGGCCCACACCTTTCTCCATGACAGTCCCCATGTCACAGGATTAAGTCCTGCTGTAATTCATGTACTGTTCAATGGGGACTCTGAAATGGCAACTGTTGATACAGAAGACTGTCCTGATCTGCACATCAGGAGCATCATAGAACTGCTTGAACATGAAGAACTTACACCGGAACAGAAGGACACAGTTTCAGATCTTTCCATGTCTTGGGATCTTCCGGCCGTCACCAAAACAAATCGGAGATGGCTGCATAACAAACTTCTACTCCATGCAGACCATGCGCCAAATTAAACAGTTGAGAAAGGGACTGAAAGATGTGATGGTATGACCCCTGCTGACATCTTGGCCAGATGTTGTCCCACTTCTTTTCCCCAAAATGGCTGAAATGCAGTTTACA
>XR_005639822.1
cacactgtctgttgTTTGGCTGACCACAATGCGGATAAAATTCCAAGCGTACTGTTTAAAGCTGAACTTCTTACTTCAGGACTTGGAGAGcaaaaagtaacattttcaggGAATGACCACGATCCCATGGTTATAACAAATAAACTGATGGAAGGGGGAGGCTTTGAATTTCTAAAACTTGTAGGATCTACTCGCAGTCGAAATCTTGCATTGCTTCAGTGTCCCAGCACTGGATACACCCTTGCCTATCTGAAAGATCCATCGACGATGATTGGACAGGCTACAATCTACATACGTCCACTTCAACAGGATCTACCCTTAGATTGTgAGAGCTCACGTCCTGCCTCTGGTCCAGTCATCCCCTGCATCACTTGTCAGAAGGAAGTTCCCTTTTCAGAGATGAAGCTGCACAGATTGAGCTGCAATGGGACACCCAAGCAGGAATCAGAAAGAGAACAAGAGGGAGGCCAAGGTGAAGAAAATGATAGTGAGACAGCCCTAGTCAGTGACAGTGTTCCAGTGAGGCCTGAAACATCAGCTGAGAGTGCAGTAGTACCGGCAGTGATTGTCAACGAGGAGTTGGATCGCAAAGAAACACAGTGaaTGGAAGCTTATTAAAGAACCCACTCAAGCTGCCAAAGTTTTCAAAGGGAATCTGCTAAGGGAACATGCAACTGGGAAACCACTTAGAATGAAGATGGATGTAAGGGACTCTGAAGAGGACAGGGAACGGGAGCTTCTCTTATTCTATAAACAGCAGCAAGAATGGGCATGTCCACTTCATTGTACTCTGGTTGGTGATGTTGCTATCGGAGAGGGAGTGATGCGGTACTTTATGACAACAATCATATCCAAACTCCAGTTTGGATTCAGTCTAGATCTTGGAGGAATGGGCCGAACACTGCTATTTGAGGGTGAACCTGACCATCTTGTTCCAGCAGCATCAGAGGCACTTATTGAAAGTAACCTCTTCCGGGTTGCAGGAAGGATGTTGGCCCACACCTTTCTCCATGACAGTCCCCATGTCACAGGATTAAGTCCTGCTGTAATTCATGTACTGTTCAATGGGGACTCTGAAATGGCAACTGTTGATACAGAAGACTGTCCTGATCTGCACATCAGGAGCATCATAGAACTGCTTGAACATGAAGAACTTACACCGGAACAGAAGGACACAGTTTCAGATCTTTCCATGTCTTGGGATCTTCCGGCCGTCACCAAAACAAATCGGAGATGGCTGCATAACAAACTTCTACTCCATGCAGATTTGGGCTGTAATatgggtctgtctgtctcttacgTCGTTGGGAGGACCATGCGCCAAATTAAACAGTTGAGAAAGGGACTGAAAGATGTGATGGTATGACCCCTGCTGACATCTTGGCCAGATGTTGTCCCACTTCTTTTCCCCAAAATGGCTGAAATGCAGTTTACA
>XR_005639823.1
ACAGAACTTTCATTGCAACGCCTAAAAATCAAGGAGAACACTCAGTCCTGCTAGCCCCAATGTTGAGGTGCAGGACAAAATGTCTAAAAGTTGCCCGGAGCTGCTGAGAGAAGCAGCAAATTTGATTGAGGAAGCTCTGAGCAGAAGTCCAACGGCTCCCAGCAGATACCGGCGTTCAATCACGTACACCTCTCCAAGgGAATGACCACGATCCCATGGTTATAACAAATAAACTGATGGAAGGGGGAGGCTTTGAATTTCTAAAACTTGTAGGATCTACTCGCAGTCGAAATCTTGCATTGCTTCAGTGTCCCAGCACTGGATACACCCTTGCCTATCTGAAAGATCCATCGACGATGATTGGACAGGCTACAATCTACATACGTCCACTTCAACAGGATCTACCCTTAGATTGTgAGAGCTCACGTCCTGCCTCTGGTCCAGTCATCCCCTGCATCACTTGTCAGAAGGAAGTTCCCTTTTCAGAGATGAAGCTGCACAGATTGAGCTGCAATGGGACACCCAAGCAGGAATCAGAAAGAGAACAAGAGGGAGGCCAAGGTGAAGAAAATGATAGTGAGACAGCCCTAGTCAGTGACAGTGTTCCAGTGAGGCCTGAAACATCAGCTGAGAGTGCAGTAGTACCGGCAGTGATTGTCAACGAGGAGTTGGATCGCAAAGAAACACAGTGaaTGGAAGCTTATTAAAGAACCCACTCAAGCTGCCAAAGTTTTCAAAGGGAATCTGCTAAGGGAACATGCAACTGGGAAACCACTTAGAATGAAGATGGATGTAAGGGACTCTGAAGAGGACAGGGAACGGGAGCTTCTCTTATTCTATAAACAGCAGCAAGAATGGGCATGTCCACTTCATTGTACTCTGGTTGGTGATGTTGCTATCGGAGAGGGAGTGATGCGGTACTTTATGACAACAATCATATCCAAACTCCAGTTTGGATTCAGTCTAGATCTTGGAGGAATGGGCCGAACACTGCTATTTGAGGGTGAACCTGACCATCTTGTTCCAGCAGCATCAGAGGCACTTATTGAAAGTAACCTCTTCCGGGTTGCAGGAAGGATGTTGGCCCACACCTTTCTCCATGACAGTCCCCATGTCACAGGATTAAGTCCTGCTGTAATTCATGTACTGTTCAATGGGGACTCTGAAATGGCAACTGTTGATACAGAAGACTGTCCTGATCTGCACATCAGGAGCATCATAGAACTGCTTGAACATGAAGAACTTACACCGGAACAGAAGGACACAGTTTCAGATCTTTCCATGTCTTGGGATCTTCCGGCCGTCACCAAAACAAATCGGAGATGGCTGCATAACAAACTTCTACTCCATGCAGACCATGCGCCAAATTAAACAGTTGAGAAAGGGACTGAAAGATGTGATGGTATGACCCCTGCTGACATCTTGGCCAGATGTTGTCCCACTTCTTTTCCCCAAAATGGCTGAAATGCAGTTTACA

Function

NR:

description
PREDICTED: G2/M phase-specific E3 ubiquitin-protein ligase-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039806644.1 True 2204 mRNA 0.43 9 42532924 42539601
XM_039806645.1 False 1266 mRNA 0.45 5 42535692 42538282
XR_005639821.1 False 1388 transcript 0.46 9 42533420 42538282
XR_005639822.1 False 1435 transcript 0.46 9 42533420 42538282
XR_005639823.1 False 1477 transcript 0.47 9 42532924 42538282

Neighbor

gene id symbol gene type direction distance location
LOC120562755 NA coding upstream 3442 42527496 ~ 42529482 (+)
LOC120561585 NA coding upstream 682222 41727566 ~ 41850702 (+)
LOC120562406 NA coding upstream 956421 41551091 ~ 41576503 (+)
LOC120562396 NA coding upstream 987330 41541090 ~ 41545594 (+)
LOC120562404 NA coding upstream 1031265 41500185 ~ 41501659 (+)
LOC120562768 NA coding downstream 123917 42663518 ~ 42666003 (+)
LOC120562762 LOC104963449 coding downstream 224802 42764403 ~ 42768664 (+)
LOC120562761 LOC104963449 coding downstream 248108 42787709 ~ 42800596 (+)
LOC120562763 LOC106675675,LOC106675676 coding downstream 285997 42825598 ~ 42831659 (+)
LOC120562760 LOC103358480 coding downstream 367415 42907016 ~ 42912785 (+)
G80473 NA non-coding upstream 53860 42362740 ~ 42479064 (+)
G80465 NA non-coding upstream 56670 42338528 ~ 42476254 (+)
G80476 NA non-coding upstream 83951 42374477 ~ 42448973 (+)
G80444 NA non-coding upstream 447560 42083622 ~ 42085364 (+)
G80435 NA non-coding upstream 473239 42059388 ~ 42059685 (+)
G80695 NA non-coding downstream 21715 42561316 ~ 42561622 (+)
G80702 NA non-coding downstream 34393 42573994 ~ 42980107 (+)
LOC120562770 NA non-coding downstream 34460 42574061 ~ 42575485 (+)
G80711 NA non-coding downstream 78059 42617660 ~ 42622605 (+)
G80713 NA non-coding downstream 136336 42675937 ~ 42770719 (+)
G80682 NA other upstream 46915 42485335 ~ 42486009 (+)
G80410 NA other upstream 526330 41939498 ~ 42006594 (+)
LOC120561589 NA other upstream 839919 41682413 ~ 41693005 (+)
G80337 NA other upstream 1076566 41421356 ~ 41456358 (+)
LOC120562389 NA other upstream 1139698 41377447 ~ 41393226 (+)
LOC120562767 NA other downstream 92806 42632407 ~ 42643990 (+)
LOC120562772 NA other downstream 243894 42783495 ~ 42786405 (+)

Expression


Co-expression Network