mrpl13 (mrpl13)


Basic Information

Item Value
gene id mrpl13
gene name mrpl13
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 17149825 ~ 17162698 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039806676.1
TCGTGTTTCAACCGAGAGAAATTACCAAACGGACCGTGACTCACGTTGGTTAAGGGCTTTTATCCAATGGTTAAGGGTCAAATGTTTTGAGGATGTGCTAGTAGTTTCATCGAAATGTCAAGTTTCTCTAGATCTGCCCAGCAATGGGCGACCTTTGCTCGTTCCTGGTTCCTGATCGATGCCAGAGTGCAGCCTCCTGGAAAGATCGCGACCATGTGTGCTGTTAGATTACAGGGGAAACACAAGCCTATCTACCATGCACTGAGTGACTGTGGTGACCATGTAGTAGTAATAAACACCAAACACATAGCTTTCTCTGGAAACAAATGGGAGCAGAAAGTCTACTCATCACACACGGGGTATCCAGGTGGATTTAAACAGGTCACAGCTACCCAGCTGCACCAAAAAGACCCAAAAGCTATTGTGAAGTTAGCGGTTTACGGTATGCTGCCAAGGAATCTGCACCGCCGCACCATGATGCAACGATTACACATCTTTCCTGATGACGAGCTGCCAGACGACATACGAGCCAACCTGACGGAGGAGCTGCCGCAGCCCAGAGAAATCCCCAGGAAACTCAGCGAGTACACGCAGGAGGAGATGGACGCCTTCCCCAGGCTGTGGACACCACCTGAAGACTACaagatgaaatgaaatgaaggcTGCCCGACGTGACCCAAGCACGCAACACTGAAAGCAACAGCATCCGCGATTATATTTCTTGTTACGATGCTAAAAATCGGAGCCCTTTTATGACTTTGAAAACACAAGTCATAACCGGGATGCCAACATCATCAACACAAACTCTGTGCTCCTCTACACACAATATGCCTTGCTGTTAGTTGTATTACCCTCAACAGCAGACCTAAATTATCCAGAAACGGCTTGAGATTTCACCATGTGGCTCAGCTCTGATCAGAGAAAATCCGATTCTGTGAGTTTTCCTCTCATTGTACAACCATGAAATGATCCGATCTGGCCAATAAAAATGACATCTGTTAGCCGGTCCTGCTTTTGAAGGTTTGTGGGTTCACAGTAAAACCCCAATTAATGGGTTACTATGACAACATTCAGGTCATCAGTGTGGTTTGTCTTGTCAGTGTGTTAGAAATGTCCAAAGTGTTGTTAAAGAATAAATCAATTGTGTTTATGTGAGTTGTAAAATAGGCTAATAAACAATTTAATAAA
>XM_039806677.1
CTTGTTGAAGGACCAGGACTCAGAATCTACCAGCTGAGTCACATGACCGAGCAGCTTCATCTCGTAGTCGAAGTCCAACATGCGCCAGTAGCCTAGAAGACAGAAACAATGCTCTCTCTAAACACCTGCAATGGGCGACCTTTGCTCGTTCCTGGTTCCTGATCGATGCCAGAGTGCAGCCTCCTGGAAAGATCGCGACCATGTGTGCTGTTAGATTACAGGGGAAACACAAGCCTATCTACCATGCACTGAGTGACTGTGGTGACCATGTAGTAGTAATAAACACCAAACACATAGCTTTCTCTGGAAACAAATGGGAGCAGAAAGTCTACTCATCACACACGGGGTATCCAGGTGGATTTAAACAGGTCACAGCTACCCAGCTGCACCAAAAAGACCCAAAAGCTATTGTGAAGTTAGCGGTTTACGGTATGCTGCCAAGGAATCTGCACCGCCGCACCATGATGCAACGATTACACATCTTTCCTGATGACGAGCTGCCAGACGACATACGAGCCAACCTGACGGAGGAGCTGCCGCAGCCCAGAGAAATCCCCAGGAAACTCAGCGAGTACACGCAGGAGGAGATGGACGCCTTCCCCAGGCTGTGGACACCACCTGAAGACTACaagatgaaatgaaatgaaggcTGCCCGACGTGACCCAAGCACGCAACACTGAAAGCAACAGCATCCGCGATTATATTTCTTGTTACGATGCTAAAAATCGGAGCCCTTTTATGACTTTGAAAACACAAGTCATAACCGGGATGCCAACATCATCAACACAAACTCTGTGCTCCTCTACACACAATATGCCTTGCTGTTAGTTGTATTACCCTCAACAGCAGACCTAAATTATCCAGAAACGGCTTGAGATTTCACCATGTGGCTCAGCTCTGATCAGAGAAAATCCGATTCTGTGAGTTTTCCTCTCATTGTACAACCATGAAATGATCCGATCTGGCCAATAAAAATGACATCTGTTAGCCGGTCCTGCTTTTGAAGGTTTGTGGGTTCACAGTAAAACCCCAATTAATGGGTTACTATGACAACATTCAGGTCATCAGTGTGGTTTGTCTTGTCAGTGTGTTAGAAATGTCCAAAGTGTTGTTAAAGAATAAATCAATTGTGTTTATGTGAGTTGTAAAATAGGCTAATAAACAATTTAATAAA

Function

symbol description
mrpl13 Predicted to enable mRNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in negative regulation of translation. Predicted to act upstream of or within translation. Predicted to be part of mitochondrial large ribosomal subunit. Predicted to be active in ribosome. Orthologous to human MRPL13 (mitochondrial ribosomal protein L13).

NR:

description
39S ribosomal protein L13, mitochondrial isoform X1

GO: NA

KEGG:

id description
K02871 RP-L13, MRPL13, rplM; large subunit ribosomal protein L13

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039806676.1 True 1188 mRNA 0.45 7 17151882 17162698
XM_039806677.1 False 1175 mRNA 0.46 7 17149825 17162698

Neighbor

gene id symbol gene type direction distance location
LOC120562784 cpq coding upstream 20212 17109876 ~ 17129613 (+)
LOC120562623 NA coding upstream 42148 17095056 ~ 17107677 (+)
mrs2 mrs2,LOC105917271 coding upstream 55949 17079407 ~ 17093876 (+)
LOC120561713 ptk2 coding upstream 84748 16995309 ~ 17065077 (+)
LOC120561714 NA coding upstream 159228 16984611 ~ 16990597 (+)
LOC120561781 tmem158,LOC102794155 coding downstream 272476 17435174 ~ 17436804 (+)
cdcp1a NA coding downstream 276395 17439093 ~ 17445194 (+)
wdtc1 wdtc1,LOC102795681 coding downstream 312870 17475568 ~ 17484853 (+)
LOC120562051 tmem222 coding downstream 323468 17486166 ~ 17489474 (+)
LOC120562050 LOC103366409 coding downstream 326898 17489596 ~ 17491941 (+)
G72862 NA non-coding upstream 83914 17065589 ~ 17065911 (+)
G72879 NA non-coding upstream 157836 16991716 ~ 16991989 (+)
G72859 NA non-coding upstream 186985 16959788 ~ 16962840 (+)
G72852 NA non-coding upstream 418781 16730837 ~ 16731044 (+)
G72801 NA non-coding upstream 655250 16494237 ~ 16494575 (+)
trnar-acg_16 NA non-coding downstream 206005 17368703 ~ 17368775 (+)
G73019 NA non-coding downstream 229570 17392268 ~ 17403627 (+)
G73027 NA non-coding downstream 265130 17427828 ~ 17463027 (+)
LOC120562054 NA non-coding downstream 337891 17500589 ~ 17504921 (+)
G73186 NA non-coding downstream 761252 17923950 ~ 17926628 (+)
G72750 LOC104952694,LOC106925895 other upstream 1077624 16018359 ~ 16072201 (+)
irx4a LOC103360443,LOC102233360,LOC103478376,LOC108232226,LOC101474805,LOC102784018,LOC102295185,LOC102202030,LOC104961814,LOC103145173 other upstream 1589533 15553464 ~ 15560292 (+)
LOC120561718 LOC107101581 other upstream 2517104 14626478 ~ 14632721 (+)
G72506 NA other upstream 2723645 14425794 ~ 14426180 (+)
LOC120562174 rbms3,LOC101066789,LOC103370884 other upstream 2779734 14175817 ~ 14370091 (+)
G73031 LOC103366415 other downstream 286887 17449585 ~ 17452568 (+)
ubxn11 NA other downstream 293945 17456643 ~ 17461118 (+)
G73123 phactr4 other downstream 482815 17645513 ~ 17647186 (+)
paqr7b LOC107588505,LOC104938075,LOC103388542 other downstream 588232 17750930 ~ 17779130 (+)
kcnn4 kcnn4,LOC104953880,LOC100704922 other downstream 1236358 18399056 ~ 18420721 (+)

Expression


Co-expression Network