nt5c3a (nt5c3a)


Basic Information

Item Value
gene id nt5c3a
gene name nt5c3a
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 33605846 ~ 33628945 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039806731.1
acaGTGAAAAAGGGGTGAGAGAATGCGTAAAGATATTACGCTGGAGGCTGGTCACCAAATAATAACAGAGTGACTGTTCGCGTTCAGCATAGAGGATCTTTGTCCGCGGGTATGCGCCAGTAGGAAGGCGCCTTTTGACGGAAGGCAGCAGCAGGAGAGTGTGGACTCGGGGCGGCGACCGGTCAGTGGAATAACAGCGGACCCATTCATGGACAGGACGGCCGTGGTGAAGGTCGGAGCCGCGGCCAGCGCCAGCGTCTGTGCCCTGTTCGGCGGCGTGGTTCTGGCCCAGTACATCGTCGCCAAGAAGAAGCGTGCGGGCAAGAAAACCAGGATCATAGAAATGaTGCCTCAGTTTGAGAAGTCGACGGTCCACATGAGGGACCCCGAGAGGGTGGAGCAGATCATCTGTGGCCTCATCAAAGGAGGAGCTTCCAAACTACAGATCATCACAGACTTCGACATGACGTTGAGCAAGTTCGCCATCAACGGCAAGCGCTGTCCGTCGTGTCACTATATCATCGAGAACTGCAGACTGGTGTCTGAGGAGTGCAGACAGAAGCTGCTGCAGCTCAAGAATAAATACTACCCCATCGAGATCGACCCTCATCTCACCATGGAGGAGAAATACCCATTCATGGTGGAGTGgTATTTCAAGTCTCACACGCTGCTTGTGGAGCAGCGGATAGAGAAAGACAAACTGCCAGAGATGGTGAGAGAGTCTGACGCTGCACTCAGGGAAGGCTATGAGCAGTTCTTCGACCGCCTGCAGCAGCACAATGTGCCCGTCTTCATCTTCTCGGCTGGCCTGGGCGACGTCCTGGAGGAAATCCTCCACCAAGCCGGAGTCTACCACCCCAACGTCAAAGTGGTGTCCAACTTCATGGACTTTGACGAAAACGGCGTCCTGAAGGGTTTCAAAGGCGAGCTGATCCACGTGTACAACAAACACGACGGCGCCCTGCGGAACACGGACTATTTCAAACAGGTGAAGGACTACTCCAACATCGTTCTAATGGGGGACTCGCTGGGGGACCTCAGCATGGCCGACGGCGCGCCCAACGTGGAGAACATCCTCAAGATCGGCTTCCTCAACGACAAGGTGGAGGAGCGGCTGGACAAATATCTGGACTCTTATGACATCGTCCTGGTGAAGGACGAGACTCTGGAGGTGCCCAACGCCATCCTCCAGAAGGTTCTATAACTCCACGCtcaacctcccccccccctcccaccacccCAATCCTCTCCTCCCATCAGCCCCCTTCCAGCTTTGGGCCTGTCAGACTTCTAACACCAACCTAAACCTTTGTCGATGGTCCAACCCCTCCTCTAGCTCtggtcccccccccaccccacccccccttgctctttaaaagccttttttatttttttatttttttcaagacATCTCCTGAATGAACAGTTTTAAAAAgtc
>XM_039806732.1
aactttaacTACATAAAAATAGCTCCAAGGTTAGAGGTAACAATGTGAGTTTAATTTGAATATAGCTACGTCCAGAAAGATTCGGACTTTAATGTCATACGCTTTAATCTTAGCCTCCCTCACAAGTTTGCTAGCTTAGCTAGATGTTGTTAAGTAACGTAACGTTACAAATGGTTCAAATGACGTTCATTTAATGGTTAAATTGTATGGTAAAATAAGTATAATATGCTGACAATATTTTGGATTCGTTTTCTGCCTGGCTGTGTAATGTTTTTCAAACATCGAGATATTACGCTGGAGGCTGGTCACCAAATAATAACAGAGTGACTGTTCGCGTTCAGCATAGAGGATCTTTGTCCGCGGGTATGCGCCAGTAGGAAGGCGCCTTTTGACGGAAGGCAGCAGCAGGAGAGTGTGGACTCGGGGCGGCGACCGGTCAGTGGAATAACAGCGGACCCATTCATGGACAGGACGGCCGTGGTGAAGGTCGGAGCCGCGGCCAGCGCCAGCGTCTGTGCCCTGTTCGGCGGCGTGGTTCTGGCCCAGTACATCGTCGCCAAGAAGAAGCGTGCGGGCAAGAAAACCAGGATCATAGAAATGaTGCCTCAGTTTGAGAAGTCGACGGTCCACATGAGGGACCCCGAGAGGGTGGAGCAGATCATCTGTGGCCTCATCAAAGGAGGAGCTTCCAAACTACAGATCATCACAGACTTCGACATGACGTTGAGCAAGTTCGCCATCAACGGCAAGCGCTGTCCGTCGTGTCACTATATCATCGAGAACTGCAGACTGGTGTCTGAGGAGTGCAGACAGAAGCTGCTGCAGCTCAAGAATAAATACTACCCCATCGAGATCGACCCTCATCTCACCATGGAGGAGAAATACCCATTCATGGTGGAGTGgTATTTCAAGTCTCACACGCTGCTTGTGGAGCAGCGGATAGAGAAAGACAAACTGCCAGAGATGGTGAGAGAGTCTGACGCTGCACTCAGGGAAGGCTATGAGCAGTTCTTCGACCGCCTGCAGCAGCACAATGTGCCCGTCTTCATCTTCTCGGCTGGCCTGGGCGACGTCCTGGAGGAAATCCTCCACCAAGCCGGAGTCTACCACCCCAACGTCAAAGTGGTGTCCAACTTCATGGACTTTGACGAAAACGGCGTCCTGAAGGGTTTCAAAGGCGAGCTGATCCACGTGTACAACAAACACGACGGCGCCCTGCGGAACACGGACTATTTCAAACAGGTGAAGGACTACTCCAACATCGTTCTAATGGGGGACTCGCTGGGGGACCTCAGCATGGCCGACGGCGCGCCCAACGTGGAGAACATCCTCAAGATCGGCTTCCTCAACGACAAGGTGGAGGAGCGGCTGGACAAATATCTGGACTCTTATGACATCGTCCTGGTGAAGGACGAGACTCTGGAGGTGCCCAACGCCATCCTCCAGAAGGTTCTATAACTCCACGCtcaacctcccccccccctcccaccacccCAATCCTCTCCTCCCATCAGCCCCCTTCCAGCTTTGGGCCTGTCAGACTTCTAACACCAACCTAAACCTTTGTCGATGGTCCAACCCCTCCTCTAGCTCtggtcccccccccaccccacccccccttgctctttaaaagccttttttatttttttatttttttcaagacATCTCCTGAATGAACAGTTTTAAAAAgtc
>XM_039806734.1
tacaGTGAAAAAGGGGTGAGAGAATGCGTAAAGCATAGAGGATCTTTGTCCGCGGGTATGCGCCAGTAGGAAGGCGCCTTTTGACGGAAGGCAGCAGCAGGAGAGTGTGGACTCGGGGCGGCGACCGGTCAGTGGAATAACAGCGGACCCATTCATGGACAGGACGGCCGTGGTGAAGGTCGGAGCCGCGGCCAGCGCCAGCGTCTGTGCCCTGTTCGGCGGCGTGGTTCTGGCCCAGTACATCGTCGCCAAGAAGAAGCGTGCGGGCAAGAAAACCAGGATCATAGAAATGaTGCCTCAGTTTGAGAAGTCGACGGTCCACATGAGGGACCCCGAGAGGGTGGAGCAGATCATCTGTGGCCTCATCAAAGGAGGAGCTTCCAAACTACAGATCATCACAGACTTCGACATGACGTTGAGCAAGTTCGCCATCAACGGCAAGCGCTGTCCGTCGTGTCACTATATCATCGAGAACTGCAGACTGGTGTCTGAGGAGTGCAGACAGAAGCTGCTGCAGCTCAAGAATAAATACTACCCCATCGAGATCGACCCTCATCTCACCATGGAGGAGAAATACCCATTCATGGTGGAGTGgTATTTCAAGTCTCACACGCTGCTTGTGGAGCAGCGGATAGAGAAAGACAAACTGCCAGAGATGGTGAGAGAGTCTGACGCTGCACTCAGGGAAGGCTATGAGCAGTTCTTCGACCGCCTGCAGCAGCACAATGTGCCCGTCTTCATCTTCTCGGCTGGCCTGGGCGACGTCCTGGAGGAAATCCTCCACCAAGCCGGAGTCTACCACCCCAACGTCAAAGTGGTGTCCAACTTCATGGACTTTGACGAAAACGGCGTCCTGAAGGGTTTCAAAGGCGAGCTGATCCACGTGTACAACAAACACGACGGCGCCCTGCGGAACACGGACTATTTCAAACAGGTGAAGGACTACTCCAACATCGTTCTAATGGGGGACTCGCTGGGGGACCTCAGCATGGCCGACGGCGCGCCCAACGTGGAGAACATCCTCAAGATCGGCTTCCTCAACGACAAGGTGGAGGAGCGGCTGGACAAATATCTGGACTCTTATGACATCGTCCTGGTGAAGGACGAGACTCTGGAGGTGCCCAACGCCATCCTCCAGAAGGTTCTATAACTCCACGCtcaacctcccccccccctcccaccacccCAATCCTCTCCTCCCATCAGCCCCCTTCCAGCTTTGGGCCTGTCAGACTTCTAACACCAACCTAAACCTTTGTCGATGGTCCAACCCCTCCTCTAGCTCtggtcccccccccaccccacccccccttgctctttaaaagccttttttatttttttatttttttcaagacATCTCCTGAATGAACAGTTTTAAAAAgtc
>XM_039806735.1
TGTCGCTGTAGCTATAAAAGCCCTCTGCAGCCACACAATCTTTTCCTCACGTTCTTGTTTAAGCTGACACAACAGCCCCCGaTGCCTCAGTTTGAGAAGTCGACGGTCCACATGAGGGACCCCGAGAGGGTGGAGCAGATCATCTGTGGCCTCATCAAAGGAGGAGCTTCCAAACTACAGATCATCACAGACTTCGACATGACGTTGAGCAAGTTCGCCATCAACGGCAAGCGCTGTCCGTCGTGTCACTATATCATCGAGAACTGCAGACTGGTGTCTGAGGAGTGCAGACAGAAGCTGCTGCAGCTCAAGAATAAATACTACCCCATCGAGATCGACCCTCATCTCACCATGGAGGAGAAATACCCATTCATGGTGGAGTGgTATTTCAAGTCTCACACGCTGCTTGTGGAGCAGCGGATAGAGAAAGACAAACTGCCAGAGATGGTGAGAGAGTCTGACGCTGCACTCAGGGAAGGCTATGAGCAGTTCTTCGACCGCCTGCAGCAGCACAATGTGCCCGTCTTCATCTTCTCGGCTGGCCTGGGCGACGTCCTGGAGGAAATCCTCCACCAAGCCGGAGTCTACCACCCCAACGTCAAAGTGGTGTCCAACTTCATGGACTTTGACGAAAACGGCGTCCTGAAGGGTTTCAAAGGCGAGCTGATCCACGTGTACAACAAACACGACGGCGCCCTGCGGAACACGGACTATTTCAAACAGGTGAAGGACTACTCCAACATCGTTCTAATGGGGGACTCGCTGGGGGACCTCAGCATGGCCGACGGCGCGCCCAACGTGGAGAACATCCTCAAGATCGGCTTCCTCAACGACAAGGTGGAGGAGCGGCTGGACAAATATCTGGACTCTTATGACATCGTCCTGGTGAAGGACGAGACTCTGGAGGTGCCCAACGCCATCCTCCAGAAGGTTCTATAACTCCACGCtcaacctcccccccccctcccaccacccCAATCCTCTCCTCCCATCAGCCCCCTTCCAGCTTTGGGCCTGTCAGACTTCTAACACCAACCTAAACCTTTGTCGATGGTCCAACCCCTCCTCTAGCTCtggtcccccccccaccccacccccccttgctctttaaaagccttttttatttttttatttttttcaagacATCTCCTGAATGAACAGTTTTAAAAAgtc

Function

symbol description
nt5c3a Predicted to enable 5'-nucleotidase activity. Predicted to act upstream of or within nucleotide metabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytoplasm. Is expressed in brain; myotome; and yolk syncytial layer. Orthologous to human NT5C3A (5'-nucleotidase, cytosolic IIIA).

NR:

description
PREDICTED: cytosolic 5'-nucleotidase 3A isoform X1

GO:

id name namespace
GO:0016311 dephosphorylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0008253 5'-nucleotidase activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG:

id description
K24242 NT5C3; cytosolic 5'-nucleotidase 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039806731.1 False 1438 mRNA 0.54 9 33605847 33628945
XM_039806732.1 True 1692 mRNA 0.51 8 33605909 33628945
XM_039806734.1 False 1384 mRNA 0.55 9 33605846 33628945
XM_039806735.1 False 1173 mRNA 0.53 8 33615880 33628945

Neighbor

gene id symbol gene type direction distance location
dctn3 dctn3,LOC102785116 coding upstream 39569 33557251 ~ 33566277 (+)
prdm1a prdm1,LOC103362578,LOC100706221 coding upstream 116172 33473172 ~ 33489674 (+)
s100a1 s100a1,LOC105028680,LOC106605324,LOC107587912,LOC107689908,LOC107663298,LOC107598020,LOC108272706,LOC108441918 coding upstream 319500 33283047 ~ 33286346 (+)
tlr18 LOC103362575 coding upstream 327329 33263730 ~ 33278517 (+)
si:ch211-113g11.6 LOC103362574,LOC103388694,LOC108243248 coding upstream 344929 33206707 ~ 33260917 (+)
trnap-agg_4 NA coding downstream 2094 33631039 ~ 33631110 (+)
trnap-agg_5 NA coding downstream 2697 33631642 ~ 33631713 (+)
bbs9 bbs9,LOC102784155 coding downstream 3696 33632641 ~ 33822829 (+)
mettl6 mettl6 coding downstream 277445 33906390 ~ 33911214 (+)
LOC120562644 NA coding downstream 288054 33916999 ~ 33919175 (+)
G78000 NA non-coding upstream 17590 33564020 ~ 33588256 (+)
LOC120561935 NA non-coding upstream 17754 33583805 ~ 33588092 (+)
G78002 NA non-coding upstream 87331 33515709 ~ 33518515 (+)
G78001 NA non-coding upstream 112186 33493424 ~ 33493660 (+)
G77993 NA non-coding upstream 145611 33460022 ~ 33460235 (+)
G78052 NA non-coding downstream 294048 33922993 ~ 33923230 (+)
G78054 NA non-coding downstream 309314 33938259 ~ 33938468 (+)
G78055 NA non-coding downstream 321828 33950773 ~ 33951005 (+)
G78117 NA non-coding downstream 333849 33962794 ~ 33963092 (+)
LOC120561795 NA non-coding downstream 355904 33984849 ~ 33987987 (+)
G77888 NA other upstream 504312 33100413 ~ 33101534 (+)
LOC120561717 NA other upstream 1184374 32405133 ~ 32421472 (+)
G77682 tbx20 other upstream 1625937 31976318 ~ 31979909 (+)
G77447 NA other upstream 2469700 31134829 ~ 31136146 (+)
rab5ab rab5a,LOC104947906,LOC103388351,LOC105936747,LOC100704868,LOC101078239,LOC104931780 other upstream 2874237 30687338 ~ 30731609 (+)
bmper bmper other downstream 197142 33826087 ~ 33879132 (+)
LOC120562157 NA other downstream 265415 33894360 ~ 33904285 (+)
sh3bp5b sh3bp5,LOC102783023 other downstream 361597 33990542 ~ 34042648 (+)
G78200 NA other downstream 900410 34529355 ~ 34544379 (+)
LOC120562567 NA other downstream 1210212 34839157 ~ 34856532 (+)

Expression


Co-expression Network