LOC120562853 (laptm4b,LOC103136995,LOC103478192)


Basic Information

Item Value
gene id LOC120562853
gene name laptm4b,LOC103136995,LOC103478192
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 997602 ~ 1014511 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039806771.1
TTAGCAGCTCAGGTAAGCTGCTcacggttaaaaaaaaaacaaaaaaaaactaactgacAGGTCCGACAGCATTTGgatcctgtctgtcattagtgaGGACAGACTGGACGCTCAGCGGACGGTGATAGGAAAGCAAGGGCTCTTTCTTTTAAACACCGACACCGTTTTCTTAAGGCTCGGGCAGCTGTAAGCAGACAAGCGGACAAGATGATGATCTCCCCGTGGGACCGCTGGTACTCCACAAGCTGCTGTCTGTGCTGTCATGTCCGCACAGGAACCATCATCCTGGGGGTCTGGTACATGCTCATCAATGCGGTGGTGTTACTCATCCTGCTTACAGCGCTCAGTGATCCTGAGCAGTACCACCTGACCAGCGCTGAGTTGGCTAATGACCTAGATGTCATGGATGACGCCAACATGTGCATTGCCTCAGCGATCTCTCTGCTGATGATACTTATATGTGGGATGGCAACGTATGGCGCATACAAGCTGCGTGCTGCCTGGATCATCCCATTTTTCTGCTACCAAATATTTGACTTTGCCCTCAACACCCTGGTGGCTGTCAGCATTGTGGTTTACCCAAACACCATACAGGATTACCTGCAACAACTGCCTGATAACTTCCCCTACAAAGAGGAGATCGCTGCTCTCAGTAATGTGTGCTTGGTCCTCATCGTGCTGCTCTTCATCAGCTCTATTCTTGGCTTCAAGGCCTACCTGATAGCATGTGTGTGGAACTGCTACAGATATGTGAGCGGCCGGGGTACGTCTGAAATCCTGCTCTATGTGACGACCAATGACACCACGGTGCTGCTACCTCCATATGATGACAGTGTGAGCGTCCCTCCCAAGCAGGCTCCTCCGCCATACACTACCACACCGCCACAGCATGAAAAAATTCCCAGCATCCTGCTGAATGGATCCTGCTGCTAATGAAACCCCAGCAAGATTCATGCACCACACTGCCTCTCCAGTGTACAGTATATTCATGGATATATTGTAGctacacaaacattacagtaCACCCATGCATGCACTGACACATACAAAATCATCtcgcacacatatgcacatgcacacaccctcTACCACCACCGTGACCTCTCATCCCTTCCTGTTATTTATTGATGACCTTATATATTCTTACTGTAACTCTTATTATTCCTCCTCCTATACTCCTATAATTCCAGGCATGATGTGCATTTTAATGCATTTGAACCTGGGTGCAATAACGCACTAGAACGTTAGGTGGATTCTATATATTTGTACTAATTCTATTTACgctctgtgtgtacctgtaaTAGTATTTTATGTGTCCTACCTTTGATAGTCACGTGTAACTTACGCACAAATGCAAAAATGACGATCTTAAAGCCCACAGTAATGAGTGAACAgtcatgtgtttcctgtttgtctCGTCTCTGCTCGTGATCAGGGTTGGATTGCCTTTATTCATAATAACTTTCTCTCTGATGGTCTGCCCTTAATAGACCTATGTGTGTGAAGGAAGTGTCACCCTGActtgaagttttttttccaaagaaaTGCATCTGCCTGTATTCTGACATGATCAAAGAGCAACCTCGTGTATATCGAACATATCACCTTCCTTTACTCTTTTGTTCAACTACAGACAGAATTGTCCTGTGTTTTAAAAAATCAGTTGTTGAGTTGTGCTGGTTGAGCTTCATAACTTTtaaatgtaagtgtgtgtgtttctactgATTGATGAGAAATGTCTTGGGCTGATATTTATCTATTTTGAGAGCACAGAAGCAGCTCTGATCTGGAATCAGTTTGCTCTTTGAAGTCACTCGATGGACCCCGGTACAATGACTGGAGATCAGGCCTCTCAATGTTCAGGAGCTCAATAAATATGGACGCTGGTTGTGTTTTTTCAATTAAACCAATGGGAGCTTCTGGTCTGTGTAAACACACAAGTCTGCTCCACCAGATGCAGTTATTGGCAAGCTGCTTCCTGGACACAAATTATCCTGCAAGGACACAAATGTCAAACCTGAGGGCGGCTGCTCtatgaaaaataaagatgtGACATTTATTTGtctattaaaatgtaatttcactgaca

Function

symbol description
laptm4b Predicted to be located in cell projection; multivesicular body membrane; and plasma membrane. Predicted to be integral component of membrane. Predicted to be active in lysosomal membrane. Is expressed in epiphysis; otic placode; otic vesicle; and retina. Orthologous to human LAPTM4B (lysosomal protein transmembrane 4 beta).

NR:

description
PREDICTED: lysosomal-associated transmembrane protein 4B

GO: NA

KEGG:

id description
K12387 LAPTM; lysosomal-associated transmembrane protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039806771.1 True 2089 mRNA 0.45 7 997602 1014511

Neighbor

gene id symbol gene type direction distance location
LOC120561543 matn2,LOC102780797 coding downstream 1372 976511 ~ 996230 (-)
LOC120562727 LOC103364896 coding downstream 21373 965289 ~ 976229 (-)
pop1 pop1 coding downstream 41341 928441 ~ 956261 (-)
LOC120561601 kcns2,LOC102789903 coding downstream 121564 873040 ~ 876038 (-)
LOC120562122 vps13b coding downstream 273036 344538 ~ 724566 (-)
LOC120561566 LOC108250351 coding upstream 20276 1034787 ~ 1046899 (-)
LOC120561835 NA coding upstream 37026 1051537 ~ 1053321 (-)
LOC120562566 mtdh,LOC103364934,LOC102233891 coding upstream 48047 1062558 ~ 1076714 (-)
ubr5 ubr5 coding upstream 74226 1088737 ~ 1144915 (-)
LOC120561787 azin1 coding upstream 145688 1160199 ~ 1172545 (-)
G69698 NA non-coding downstream 33866 963496 ~ 963736 (-)
G69650 NA non-coding downstream 192300 805050 ~ 805302 (-)
G69615 NA non-coding downstream 654564 342587 ~ 343038 (-)
G69564 NA non-coding downstream 750662 246688 ~ 246940 (-)
G69541 NA non-coding downstream 764104 217828 ~ 233498 (-)
LOC120562682 NA non-coding upstream 38819 1053330 ~ 1055361 (-)
G69742 NA non-coding upstream 65868 1080379 ~ 1080878 (-)
G69746 NA non-coding upstream 68127 1082638 ~ 1083151 (-)
G69794 NA non-coding upstream 70991 1085502 ~ 1155503 (-)
G69799 NA non-coding upstream 158651 1173162 ~ 1173415 (-)
osr2 osr2 other downstream 264846 728485 ~ 732756 (-)
zfpm2a zfpm2 other upstream 710647 1725158 ~ 1861166 (-)
usp45 usp45 other upstream 1712657 2727168 ~ 2818027 (-)
G70407 NA other upstream 2614622 3629133 ~ 3629818 (-)
LOC120563202 NA other upstream 2964800 3979311 ~ 3979414 (-)
eny2 eny2,LOC100692744 other upstream 3057813 4072324 ~ 4077811 (-)

Expression


Co-expression Network