LOC120562868 (LOC100690947,LOC102779295,LOC104968267,LOC102211038,LOC101468916)


Basic Information

Item Value
gene id LOC120562868
gene name LOC100690947,LOC102779295,LOC104968267,LOC102211038,LOC101468916
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 20368104 ~ 20380083 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039806791.1
gagaggcaaaaacacagagggagagagaagcagCCAGGCAGAGAGGGAGCTGGCGGTCTGGTGGCCTTGCATAACACGCGTTGGAGCAGCTTTGAACGCAGGACTTGGTGTTAGCTTCAGCTGTGGGGAACTTCCTTTACCATCAGCAGCCCGTTGCCGAGGAAGGGTAGCTTCCAAACCGGAGAATCCAAAGAGGAAGGCAGATCTGGAGCAGCTACAGCACCAGGCtccaggagaggagagagcggCACAAAGGAGAGACTCAGGAAGAGGAGTCCTAGGAAACACGTCTCCaacacatatatgcacacagacacacatacacagagaggcAGGAATAATCCTTGGACATGCTCTGCAAGCAGTGGCTGTGGAGAGACTGATTCCTGCCGACATTGTGGAAGAGGTGGATCGTTCAGAGATGATTCCTCATGAAGTCTATGGAGCTCATTTTGTGAGCTGGAGTGACACCATCTTCTCTGGTGTGAGACCTGGAGCTGTCTACCAGTGAACACAAAGAGAGCCAGAGCCACGCAGCACACAGAGAGTCCGACCGCTGCACGTAAccgagagagaaagacagatccATAAGAATTTAGAATTACCCACCTGGGAATATTTGTAACCACGCTGGCACAATGAAATCCAACCAGGAGCGGAGTAATGGATGCCTGCCCCCTAAGAAGCGTGAGATCCTGGCTCTGGAGCAGAGGCCTGTGGTAGTTGCCACACCTCCAGCTGCAGTGATTACTGACAGTCCCCACACAGAGAACCTAGCATGGCTGGCAAGTGTAGCAAGTGAACGCTGCAAATCCAGGGACGCAGAGAGCCCAAGATGTCCCATCTACTCCACTTCATCCTGTTCTCCTTCCACTTCTGTCCCTTCCTCGGCCACTCCTCTGTCTGCGGTACCCCTGACCTCTCTGCCTACAGTTTACCCCACCGCCCTCCCCCAGCAGGCCGGGACTATCCAGTTTGCTCAGCTGGGACCCAACGTTCAGTTCATCAGCTCAGGGCCCTATGCTGGCTACATCTCCTCTCACATAATCTCCGCCAATGCTGGCTCTGCACCTAACAACTCTGCCATAGGACAGCGTTCCCAGCTGGATGGCTACACCACTGCCCTCATCTCCCCCAACACCAAAGGggagcagcagtttcaaataggCCTCTCTCCCACAGAACTGACTCCTGTGTCGCTTTCAAGCTCCCCCCAAGTCACCAGCCAGTACTTTCATCTGGACAGCAGAACACCTCTGACTGTCAGCGGAAACTCTGTCACTTCACCCACAGCCCACCTCCAGCTCCACCCTAACACAACTGTCCTCCCTCAAACGCTCACCCTCGCTCCCTCCCAGCTGGTAGTTCAGTATGCAGATGGTTCAGCTGGAAAGAAACCGGAGGGGCATGCTAAGGGTGTGCTGAATGGGGAATTGGAGTTTGTCAAACAGACTAAAACTCCCATTCATCAAGTGAACCATCAGCAGGTCCAGAGCTATGAGGCCAGACATATCCTCCTGCCTGCAGACTACGGCCAAAACCCTGCTGGACTCCAGACCTCCTTGGTGCTGTTGGCCCAGCCCAACCATGGAGCTGAACGTGAAACTGGCACAAATAAAATCTCCTTTATCCAGACTGAGAAAGGAGGCATCTGTTTGGGAAAACCAGTGTCCAGATCTTCCTCCTTCACTTCCCTCTCTTCCTCAGATGTGGTTAAGTCTGTTGCTCCTCATACAGTCATCCAGACCACTCTACCCCACGAGGAGCTGCCTGCCAGTCTCTATTCCTCCACACAGTCACCTATCATTGGCTATATCACCAGTGCAAATCAGCATGCTGTCAGCTACCATGCAGCACTGCCTCAGCACCTGGTCATCCCGAGTGGCCAGTCCCTCTTCATCCCAGTAAGTGGCACCAATAACGGCACAGAAATTGAGGTTAGTTGTACTGTCAGCGCCCTGACTGCTACAACTACCCCTCAAATATCCACCGCCATGCCACATGCCTATCTGGCCACAGCCCTGTCCAAGTGTGAGGCGCTTGGACCAGATGGAAATCAACCACCCCCTGCCATCGCACAGGCACCAGTGATGCCAGTCCTGCCCCCAAACCCACCTCCTGCAGTGGCGGCAGCTCCCTCCCCAACTCCTGCTCCAGTCCCCAGTCCCGCCCCTGTTTCCATTCAAGCCTCCCACTccatctcctcttcctcttcccctgTGGCACTTCCTCCATTCTTCATGCGAGGCTCCATCATCCAGCTGGCCGACGGGGAGCTGAAGCGCGTAGAAGACCTCAAGACGGAGGACTTCATCCAGAGTGCAGAGATTAGCAGTGAGCTAAAGATCGACTCCAGCACTGTTGAGCGTATTGACAGTGGACAGAGTCCTAATGCTGTGGTCATACAGTTTTCTGTGGGAGAGCTCAAAGCCCAGGTGTGTGTGGAGGTGCTGGTGGAGTACCCCTTCTTTGTATTTGGCCAGGGCTGGTCATCCTGCTGCCCAGACAGGACCACCCAGCTGTTTGAGCTGTCGTGCGCTAAGCTGTGTGTGGGTGATGTATGCGTGTCGCTGACCCTCCGCAGCTTGAGGACCACTTCAGTAACAGACAGCCAGGCTTTAGGGACCAAGCTGAAGACTGGTCACCTCTCTGACTCCTGTCACAATGTGGATGCCACTGTAAGAAACAGTATGAGTCAAAACGCTGCAGGCAAAAACAGTGGGCTCCTCATAAAGGCTTCCAGTGCAGACAGGCTGCAGAGGGAGCAGGTTACTGGGCCAGGACCAGGACTAGAGCTACCACCAGGATTGGGACTAGTTCCAGGACCAGGGGAGGGGATCTACGGAGCTGGACCAATGCTGGCAGTTTCTGCAACTGGAGAATTGAGACAGGAATCAGTGAAAACAGACATGCCTGCTCTTACCAAAATGCAATGTGGTGATGCAGAGAGACCCTCAGTCCGCAAGAGACGCTGGTCAGCTCCAGAGCGAGACCAGACTGAGAGAGCTGAGGAGGAGCCTCCTCTGACTCTGCCCAAACCCTCCTTCATCCCTCAGGAGGTTAAAATCAGCATAGAGGGCCACTCTAGTACTGGGAGTGAAAGGTGCTTGAACAAAAGAATAGACTGTTGAGAGAACTTAAGGAATTTTGATTACCTGTGGTTTGCTTTGTGTTTATCTTTCCTCTCTATCCAGACTACTGTAATATAGGCTGagtttatacagtatttacatgttttcttttctttcacacaAGTCTGATATCTACGATGAAGTACAGTAGAGCACCTTCATAAGTGGTATCACACATGAGATCAGTGCAATCAATGCTGAAAGCAAAAATGAATGCAGCGTGAATGTTGAGTGTGAATGGCAGTCAGACACCTGAGAGACATTTCACCTGCGTGTCACATATCATAAAATGGATCTCCATGTGTAACGTGGCTTAAACCTGTCGACCATTCCTCTTATCACATGAACAAGCACAGACCCCAATGTCAGCGTGTACAAAGTGGGTATCCATTTGTGACTCTCATCCCATTTGTTTTACTGTGTATTTGGTTTGTAGTGTGAGTTTATGAGTGGTTGGAGTCAAAGAGAGACCTTTGGAGTTTCAATGACAATGCTCAATCATCATGGCTGTGATCTCTGCTGCCTTGTATATCTGATGAGGTTTTGagttttattatattaataattattttcattttcataccATTGCTGATGTTTGCTCTGCCGCAGGTGGCCTTGTGCCACTTGTCTCTACGTGTATGTGCGCGCGTGTGTtggtatgtgtgtttttctgtgtgtcagACGCACAGAAttaaggtgtgtttgtgtggctgtAGCTGTGAGCTCAGTCATCAATACAAgctgcaaatatcaatcttaaAAAGGCCTGAATGTAAATCACTGAATTAGTCCTCAATCAAAGTAGAATTTGATACCTTTGCTCTTGCAATGTATGGGTGACAGCAGTTGCACATGGGTGCATTTCTCTGATCAAGTTCCTCAAATTTACCTTAGTTTATAAATCTCATAATTCCTTTAATAGACAGCATGTGTCACAAATGAATGCCTGTATTTAGCCCTGCTATGTGCAATATTACAAATCTGTACAAAATAAACCATACTGTAGTTGGCTAACTTGGCTAACTTAATTGaattttttggccacttggggacAGTGCAGCAAAGAAAACTAGGTTTGATATGGCAAACTTTTGCAAAACAATTGCGTATACATCCAGCAGCACAGGTCATTATTTATTTGGAGTAATGTTTCAGGCGGTCTGTTGAATGTAAGTCCAGTTCACCCTACTTTTTGCTGTGTTTTGCTCTCGACCAGCTACTGAGAGAAATCTCTGGCCCTTAAGTTCCTAAATTCTTCATCACGATCACCAGCTAGATGcttactttgtctgtctgccgttTGGTGCTGTGCAGGTAGTTTAGaatgggtttatcagagctttttcactgaaaactaCCTGCTGCACCTAAAATATTGACCctgatgagagcagtgagagaaTGTTGCAGtccgtaaaaccaaaacaatgagcggAAGGAGGCTAAATAGCTTTTTAGAGCTAAAAGGAACTGCAGAGTCTGGTAATCTctccctttcacattacacataacTATCTGAGGCATTGTTAACAAACAAATAATGATTAAAGCGactttaaatgaaaacacacaataaaacaaaataaataaacatggcATGCTATTTacgtattataaaaaaaatggtacCTTCCCATTCTATTTACCTATCCTCTTGCTTTCTTTACAGAAACTATGGCCTTCGATATATATGTACCTAGTTCACTGCAGCACATGGTTTTTACGGATTTTCTTCAATGATGGTATGACTTTCTTAAGTCCATGCCTGTTATATCAGAGTATGGTTGTTTTGATTAAAACAGCTTAGATCAGTGTACATGTGATTTCTTTCTTAGAGTAGAGCCAAAATAAATATCCTACAGTTCATACTCaggaacagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtctgtgtctgtgtgtgtgtgtgtaggcctgagACAGCATGGCTACAgtcatgtgtatgtatgttctgAGCAGCAGCACTTTGATGAAGCATCCAGCAGGAGTGTGGTGGTCGTGGTGTCCCTGTTCCTCAGCTGTTagagataatgaaaataatcaactGACTGTTTTTCATCTGTCCTACAGGTTTATCATTGAAAGAAAACATTATATACCAGGGCAGGGAATGTAAACACAACTCGGGCAAACTATCTCAACTTTATTTTTGATGACTGATAGAACTATtatacagaaaaagaaagagagagttgATCATGTTCAGTAAATTGTATCCTAGAgagtgtacagtgtgtgtgtgtgtgtatagatatTCTAACCCTTATGTAgcctatgtactgtatgtaccacTGCGCCTCCTTCAATCATTCCCTTAACTCACCAATATCAAGTGGTCCTGCTATAGTTTCTGTCAGTTCAGGTATTGATCTAATGTTTATGAATGTGCTACAGTTCTTTGGGAACATCTACATACGTTTGGCCTCCTCAGAATTGAATTTCACTTGCACATTGTAACATGCAGTATGTGTGAATATGAACTGCAATTTATCACAATAGCCATTAACCTTTTTTATAACTCCTGAAAGGTGTTTATTGTAAACCCATTACCCAGACTGTTCTCATCTGTGTTTGACTGCTCAGGCTAAACACTGCCCAGTGACTGTTCTTCTCCAAAATTATGTGGTCTTATATTTTtcactgttacaaagtaaccaTACTGTTTCATCAGTTGGTCTTTGTAGCCATTTTCTTCTCTTGTGAGTCTGGCctgtgtttatatttgttttctttaagaattattatttttcagaTACAGACCGAATGGCATCACGACAGATACATCTGTGAAATGTAGGATTGATGCTTAAAGGAGTATTTGacatttggggaaataaacTAGTATTAGTTTATCTAGTCTATTagttttcttgctgagagttaagTGAGATTACCactcaatcttctcatctacctTTCCGTAAGAAAATTAATAAGCGCATTTCCccaaagttttaaaaagttcTTTAAAAGGCCCTGCACACACAATAAAGGTGTACACAGTCCTGAGAAGAGGTCTAATCACTCTAACCTGTGAGGATGGACCACAGGTGTGTAGGGCTTTAAGTTCAAAGgttcaataataacaatatactCATTTTGCTCACAAATATGCTTAAGCTGGGCCTCTTAAAATTTGTAATTTTCAGAGACTTTCTAAATAATGTTGAATATGGTGTATACACACCACCTTGTGGTGATCTATGGAATTGCACTTTGTTATATGGGGTGGGGGCGTGTTTTAGTCTAACTAATACACAGAAGTAATGTACAGCATGTCTGAGAGAAACTGTACACTAACACTACAGCATCTCAGTGATTTGTAAATAGCCAAAGTCTTCCATTATAATGTTGGTATGACCTTGTAGTCAGTGGAGAGGATAAACACTGATCCCCATGTACAGACCTTAAGTGAAGTTCAATTTCAAAAAGACATAATTTATTTGAAAGGAATACAGGATATCGCTTCAcctaaaatattttattttgcaccagcttaaaaaacaaaaaaaggaaaaacatgtttttttgtaattcagGTCTGTTTGTTGAATAAATCTCAGCTAAGATACAGTATGTCCTACGTACAGTATGTAGTAAATAACAATAATGTTCCCTTATTTTGATGGTGTTGAGGTTTGCTAGTCAGAAACTGTTAAATATTTACTTCAAATGTTTGATTTTACATTTGATCATAtatattaaaagaaataaaaagagtcTAAAG

Function

NR:

description
PREDICTED: ataxin-1

GO: NA

KEGG:

id description
K23616 ATXN1_1L; ataxin 1/1L

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039806791.1 True 6932 mRNA 0.45 3 20368104 20380083

Neighbor

gene id symbol gene type direction distance location
LOC120562869 LOC104968268,LOC100690679,LOC103353894 coding upstream 9907 20352377 ~ 20358197 (+)
fabp4b LOC104968266 coding upstream 15863 20350979 ~ 20352241 (+)
stmn2a LOC104940327,LOC104968264,LOC102210154,LOC106906614,LOC106939818,LOC100696657,LOC101077630 coding upstream 30510 20333253 ~ 20337594 (+)
upp1 upp1,LOC104968262,LOC104940328 coding upstream 36375 20326946 ~ 20331729 (+)
rbm12bb LOC104957629 coding upstream 46225 20314275 ~ 20321879 (+)
si:dkey-12j5.1 LOC103353891,LOC103388393,LOC103478624,LOC102212439,LOC102778746 coding downstream 68144 20448227 ~ 20475554 (+)
LOC120561989 atp4a coding downstream 251375 20631458 ~ 20641851 (+)
galnt1 galnt1 coding downstream 523770 20903853 ~ 20960657 (+)
LOC120562142 NA coding downstream 620188 21000271 ~ 21001642 (+)
nr4a3 nr4a3 coding downstream 700803 21080886 ~ 21103601 (+)
G74081 NA non-coding upstream 27177 20340341 ~ 20340927 (+)
G74067 NA non-coding upstream 49987 20314484 ~ 20318117 (+)
G73871 NA non-coding upstream 316098 20019109 ~ 20052006 (+)
G73881 NA non-coding upstream 321724 20040871 ~ 20046380 (+)
G73836 NA non-coding upstream 547513 19820235 ~ 19820591 (+)
G74091 NA non-coding downstream 22740 20402823 ~ 20423897 (+)
G74116 NA non-coding downstream 96081 20476164 ~ 20476367 (+)
G74119 NA non-coding downstream 104627 20484710 ~ 20484943 (+)
G74121 NA non-coding downstream 128650 20508733 ~ 20520082 (+)
G74145 nacad,LOC104951159 non-coding downstream 227257 20607340 ~ 20614707 (+)
gra NA other upstream 42143 20322330 ~ 20325961 (+)
si:ch211-257p13.3 kifc3,LOC102783047 other upstream 141113 20214588 ~ 20226991 (+)
LOC120561838 tppp other upstream 158777 20192690 ~ 20209327 (+)
G73779 hdac9 other upstream 718593 19646975 ~ 19649511 (+)
si:ch211-254p10.2 LOC102209663,LOC101158134,LOC102295699,LOC101064473 other upstream 914821 19447167 ~ 19453283 (+)
glipr2l glipr2 other downstream 220240 20600323 ~ 20605165 (+)
sec61b sec61b,LOC102796100 other downstream 627930 21008013 ~ 21011414 (+)
LOC120563169 NA other downstream 951329 21331412 ~ 21336665 (+)
crot acbd7,crot,LOC102783617,LOC101470173 other downstream 1022952 21403035 ~ 21415894 (+)
them4 LOC106592246,LOC104959154,LOC101466288,LOC107096308,LOC100702377,LOC105029233,LOC106575342 other downstream 1218951 21599034 ~ 21603458 (+)

Expression


Co-expression Network