LOC120562869 (LOC104968268,LOC100690679,LOC103353894)


Basic Information

Item Value
gene id LOC120562869
gene name LOC104968268,LOC100690679,LOC103353894
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 20352377 ~ 20358197 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039806792.1
CAAATATCCAGTTTTCCAAAACTTAAATTGACATGcattcagtttttgttaaattattttcaAACTTAGACTAATCATGAGGTCATAAATCAACCCATGACAAGTTTGTCTCAGCAAACAAGAACACTAACCTTAATTTTTAACTAGAATTGTGTGGGTTTTCCAAATTGGGGCCCAATTGCTTGTTAGTGGGCATATTTGGGTTGGTAACATTAGGATACAATGTCCAGTTGACTTTAAACTTGTTTAAAGCTATTAGACATGGGCACGGGGCTTTACAGAGGCCTTTTGTTCAAACAAGGGGAAAGTGGTATCAGTCCTCTGACAAGGATGTGGGTGACTGGGAGGTGCGAAGGCCAAATTCCCCACTTGGGTTCAGAGCACTGACTTCATTTGTGCCTTGTCTTGGATGCACAGATGTGGAGTTCATGCAAGTGCACATTTGTATGTGGGTTCTTTTGGACAGTAGGTTGAGGCCCAAATGTCCAGGCTTTATTGAATGATTGTGACCTTGTGCTCTGGTAACAGAGTACTGACAATGAGAAGctgattttgttttgactcattcATACATGAGACCATATCACATGCACCATTTAGGCATTTTGCACATTGACTATATAAAACTTTAAAAGTCTTTAATTTTACTTAAATGgtttgtttaacccttgtgttgtcctttgggtcactgggacccgaaagACAACCAAAGGGTTAAAATGTGTACAAATCCACAACTATTTTCCAGAGGACATTCAGTTTTCCCAACTCAGATTTTTAAATGCCCTATTAATGATTAAGCTTACTCTGGATAGCTGTGGGTGAAGGCTTTAAGCAGACATTCTTTTATAATGGTTTAACCCATTCAAACACATCACACCATGAGCTGATGAATTCTTGTTTTAATGGTTCTTGCTTGAGCTGCTTTGTATGCGCAAACATGACAATTGTTTAAACACTTCAGACAACCTTTTCTGTAGGTTTTTCAATCCTCTGCAGAtggacacacagcaacacatgcacaaagtgcatacatgCTCGAATCAGTGAGAATAACTTATTTATCCAACTTTAAGATCAAATATATCGGACAAGTctctgttcttttaaaaataaatgctttgtaGGTTACACAGTCAGCCTCATACTGGAGTTGCTGAGTCTGTTTCATGAATAAGAAATGGTCAATACATGTCTTGGACTGCTATGTATCAATAGTACATCAAAAATAAACTGCCTAAAATGTAACCAGGACATAAAAGTGATTTATCAAACTGCTTCGGAGTATCAGCCAGCAATGTGAGGTGCTTATTCCAGCAAATGTTTTGCAACAAATTATTAAAATGGTTTTGAAAACTACGCTATATTTTTCAAATATCACATAAGTACTAATGATGTAATAACTGGATGAGGCCTCACTCAAACAAATCCAAGACCAAAAgtgattattttttatgtatatatattttttcctttgtgCTGCATTACTTGGCTTGgtccagagtgatagagaaagacatggCTCGGGCTTGGTCATTTGAGTTATGACGTGAATTTGAAGACTTCAAATCTCACTGCAGTTTATTTTGCAGACCCATGCTACCCCCTTACGGCTGATACTTGTAACGGCAATTATTGGACAGTACCACTATATCCTAATAAAGGGGTGCAATGTTCACATTTAGTCGTGAAATGGACAAGGGTTTTATGAGAGTCTgtctttaacaaaaaacatgtaAGTCAATATACTTTAAGACAATGTTTTCTCGATTATAATAtccactgtacagttttcttgtctttgtccAGATGAAATGATCCGGAATGACGTCTTACGTGACGCCATCATCAAACATGGCTGAcgaagaaaacacaaacatggaAGTCGataaggaaaagaagaaacctTTTGCTACCACAGTTAAACCACTCGTTGACGAGGTTACCCAACGAATTGGCAACCAGAACAATGTCGAAGGCAAAAAGGACGCCGGTGAAAGCAGCCCCACAACGGAATACTGCGAGAAGCTGCAGGGGTGGATGTGGCAGTACTACACGGGATATGTGAACTGGCAGAGCTGGATGGCAGCGTCAGCCATGTCCTCACCTTATTATTTACAGTCAGCCAGTGGGGCGTCGACGGTACCACTTGATATCAATTCCCAGAACTGGTATAACAGCCCGTTTGGTCTTCCGTTGTCGCCTTATCCACCTGCCGTCTCCCAAAGCATCCGGGTAGGTGAAGCCGCTGGCGGGGCTGCAGTGGCCgctcagcagcaacagcagccgCGGGAGAACGGAAATgcacagagaccagGTCGGGAGTATAGCATTCCTTCACCTCTCCAAAGACTCCTGGCTGAGATGGTGGATTTTTTCATACTGTTTTTCATCAAAGCAACCATAATCATCAGTATTATGCATCTTAGTGGAATCAAGGATGTTTCCAAGTTTGCCATGCATTTCATAGTGGAGGAAATAGATGAGGACACATCGATGGAGGAGCTACAGAAAATGATGCTTGTTGCACTCGTGTACCGGATATTAGTTTGTTTTTACGAGATTGTGTGCATTTGGGGAGCAGGAGGAGCCACTCCAGGGAAGTTTCTTGTTGGACTCAGAGTTGTCACGTGTGACTCATCAATTCTGGTTCAGCCTAACAGGGTGCTTGTAGTGCCAGCAACtaatgtctctctgtctgcATCCACTGTCCGAGCCTTGAACAAGAACTTTTCAATTGCCTTCTTTTTCCCAGCCttcatcacacttctgttcttCCAGCACAACAGGACTGTGTATGATATGGTAGCTGGTACAATTGTTGTCAAACGCTCCAGGATCAGATGACCCAGAAGAGAGTCCTACACTATTACTGAAGATGCACAGTGCTAATGTGTTTGGTTTTATAAATACCTGCAGAACTCAGACATTAGCCTTTTAAGGTATCGTCAGAACATGCAGGAGCATTAAGATGGTTGCAGAGAGTTTGATGCACATCAGTATGAACTATCGCAGTTCCCTACAACTTCGGTTTGGTTTGTCTCGGACACCTActgtatttctgcatgtattgcTACATGCTGCTTTCAGAAACTGTTCTGTGCCAAATTGATGTCTCCTTTGAAGACAGGAATAATTATGGTATATGCTACCATTCCGTTAACACAACATTTGCCTCCTTAAAATACTAATCTTCCAGATTAAGGGTGAATGTCTCGTATCACTCAGTATTGAAGTTGCTCATCATGCATTCATGAGATTATACCTTCAGTATCTCTTTGTATTCAGATTTTGTCTTAAGAGAGTTGTATACTCAGatttttcaattttgagttGTTGACCTTCATCACTGCAGGAGTGATGGCCTCACAATCAGCTCTTTTAGCTGCTGAAATGCTGTGGTTCTTAGGCACATTTAAATGTATCGAAAGGAAATGTTAACCTGATCACAATTGCTTTTCCTTTTACTCTGAAAGCATGTGTGTGACTGAAATTTAATGTATGACACATTTTATGTGATTAGCTGTTATTTGCATTTAAAAAGATTAAATGAAACCACAACTATTTCCCTG

Function

NR:

description
PREDICTED: protein FAM8A1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039806792.1 True 3572 mRNA 0.40 6 20352377 20358197

Neighbor

gene id symbol gene type direction distance location
fabp4b LOC104968266 coding upstream 136 20350979 ~ 20352241 (+)
stmn2a LOC104940327,LOC104968264,LOC102210154,LOC106906614,LOC106939818,LOC100696657,LOC101077630 coding upstream 14783 20333253 ~ 20337594 (+)
upp1 upp1,LOC104968262,LOC104940328 coding upstream 20648 20326946 ~ 20331729 (+)
rbm12bb LOC104957629 coding upstream 30498 20314275 ~ 20321879 (+)
nradd LOC104940332,LOC103360043 coding upstream 64929 20278493 ~ 20287448 (+)
LOC120562868 LOC100690947,LOC102779295,LOC104968267,LOC102211038,LOC101468916 coding downstream 9907 20368104 ~ 20380083 (+)
si:dkey-12j5.1 LOC103353891,LOC103388393,LOC103478624,LOC102212439,LOC102778746 coding downstream 90030 20448227 ~ 20475554 (+)
LOC120561989 atp4a coding downstream 273261 20631458 ~ 20641851 (+)
galnt1 galnt1 coding downstream 545656 20903853 ~ 20960657 (+)
LOC120562142 NA coding downstream 642074 21000271 ~ 21001642 (+)
G74081 NA non-coding upstream 11450 20340341 ~ 20340927 (+)
G74067 NA non-coding upstream 34260 20314484 ~ 20318117 (+)
G73871 NA non-coding upstream 300371 20019109 ~ 20052006 (+)
G73881 NA non-coding upstream 305997 20040871 ~ 20046380 (+)
G73836 NA non-coding upstream 531786 19820235 ~ 19820591 (+)
G74091 NA non-coding downstream 44626 20402823 ~ 20423897 (+)
G74116 NA non-coding downstream 117967 20476164 ~ 20476367 (+)
G74119 NA non-coding downstream 126513 20484710 ~ 20484943 (+)
G74121 NA non-coding downstream 150536 20508733 ~ 20520082 (+)
G74145 nacad,LOC104951159 non-coding downstream 249143 20607340 ~ 20614707 (+)
gra NA other upstream 26416 20322330 ~ 20325961 (+)
si:ch211-257p13.3 kifc3,LOC102783047 other upstream 125386 20214588 ~ 20226991 (+)
LOC120561838 tppp other upstream 143050 20192690 ~ 20209327 (+)
G73779 hdac9 other upstream 702866 19646975 ~ 19649511 (+)
si:ch211-254p10.2 LOC102209663,LOC101158134,LOC102295699,LOC101064473 other upstream 899094 19447167 ~ 19453283 (+)
glipr2l glipr2 other downstream 242126 20600323 ~ 20605165 (+)
sec61b sec61b,LOC102796100 other downstream 649816 21008013 ~ 21011414 (+)
LOC120563169 NA other downstream 973215 21331412 ~ 21336665 (+)
crot acbd7,crot,LOC102783617,LOC101470173 other downstream 1044838 21403035 ~ 21415894 (+)
them4 LOC106592246,LOC104959154,LOC101466288,LOC107096308,LOC100702377,LOC105029233,LOC106575342 other downstream 1240837 21599034 ~ 21603458 (+)

Expression


Co-expression Network