efna1b (efna1,LOC104918192)


Basic Information

Item Value
gene id efna1b
gene name efna1,LOC104918192
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 22069006 ~ 22080302 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039806800.1
ACAGTGTTTGGTGTCCTGCATCACTTTGAACTGCCTTGATTACTACTCTAGGAGCGTAAAATCCACGGTTGTTTTCCGTGCACGCATTTacgtatttaattatttaataacaGAATAATTTCTATTCATCGCTTGAACTAGTTTTACTTGGTGAGGTTCCTGtggagaagagaagaaatggatttggtgtgtctggtgtgtttgGCGCTGAGCATCGGTGCTTGGTTCGCCTCTGCGGAGAGACACAGCGTCTACTGGAACAGCACGAACCCGAACTTCCTGTGGGACGAGTACACAGTGGAAGTGAATATCAACGACTATCTGGACATCATCTGCCCCCACTACACCCACGGTGAGGTGTCATCGCATGCAGCTGAGCGCTATGTGCTGTACATGGTGGAGAGGGAGGACTACGAGGTGTGCAAGCCTCACTCTTTTGACCAGCTCCGTTGGGAGTGTTCGCGGCCGTTCGCTCCCCACGCTCCCGAGAAATTCTCTGAGAAATTCCAGCGTTTTACTCCCTTCACCCTGGGCAAGGAGTTCAGACAGGGAGAGAGCTATTATTATATCTCCAAGCCAATGCATCACCATGGCCAGGAGTGTCTAAAGCTAAGAGTGGATGTTGCCGGGCAGAAAGGCTCCGGAAAGACCAATCTAGAGAAATCAAAGGCGGAAGATACAGGCAAAAGTTTTGATGGAGGAAAAGCAAAGTTTCCCACTGATGGAGGAGTTCACAACCCCTCAAACCGTCTCCCAGCAGATGACCCTGCTGTGATGGAGCCAAACGTCCAGAGGAGCATCGGCAGTTCAGGAGCACAgcttttctcctttcctctcttcttaACCATGATCCCAGTCCTATTAGCCCTGATGCTACACTAAGGCTGAGCAAGACGCCACAACATAGACAATGCTAAACCAATGCCGGTCATTGGGaccatgaatgtttttttttttatacagactttttttttatacgagcatggtgtcagtgtgtgtttgcgtgtgtttgCGTGAATGTGGAACGTGGATCGTTCCAAAGAAGAAGACATTTTTGACTGTTTAAGAtgcactctgttttttttttttgtcatgaacAAAACTGCAAGCAAACTGATCAAAATCAAATAGAAAATGACAAGAGGATTACATTGTCTTCGTTATCCTGTGTTCTCACCACTGGTACAGATTTGCATTACGCTCCTCATCTCCAGCTGTTAATGTCATTTTTCCTCCTCTACATGTAGAGAAATTATTAATTCTGTGTGTTGGAAATGTTGTCGTCTACTGCCAAAGTGGTATACATTATGTAGGATTTTTGTCATGTTGTTGTGTAGCACTCAGCTCCCTGTtgtatctcctcaagtctgtCAACCACTGACATTCATACAAAAGCAGTCACtggggtttaaaaaaagaaaacaaatagtcAGACCACTGGTTCTCAaccttattttatttcttttttgtttatgaGCCTTTAAAGTGATGCTGCTGCGCAGATTAAACAGTGAAGttatatttggtgttttttttagttttttttttttacatttgatgacgtttttcattcagaaaattagaagaAATTCACCACAATTTATTTGGATCctagaaatatgtatttatattttaggTCACAAGTCCTCACTAGTCGATTACATGTTCTGAGGGGTTGTGACTTGAGGTTGAGAGCCACTTATCAAGAGACACATACTATgagatacattttaaaatgcacaggGGGTTCAGGGAGCTGAGCTTCTTCAGTACTTATTCACTCATTCTACTGTACATGGTACACTGGCTGATGTGCAGATGTGATTCCACTTGCACATTGTCAAACCTCAAACTGAAGGGACTTCCCagaatacatttacatttgtttgttttattgctaAACATGCCAGTGTCATtttgtatatgtttatatgtaaaTGTGTATATAAAGATAACTATAAGAAACTGTTTTAAGATGTGAAAAAAATCTTtagtgaaataaacaaaaaaaagtgccGTAA

Function

symbol description
efna1 Enables ephrin receptor binding activity. Involved in several processes, including ephrin receptor signaling pathway; protein stabilization; and regulation of protein metabolic process. Predicted to be located in extracellular region. Predicted to be active in plasma membrane. Predicted to be anchored component of plasma membrane.

NR:

description
ephrin-A1-like

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
K05462 EFNA; ephrin-A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039806800.1 True 2021 mRNA 0.41 4 22069006 22080302

Neighbor

gene id symbol gene type direction distance location
efna3b efna3,LOC105928532,LOC103478166,LOC103140801,LOC102234981 coding upstream 35739 21975192 ~ 22033267 (+)
flad1 flad1,LOC102778463 coding upstream 168354 21890529 ~ 21900652 (+)
chrnb2 chrnb2,LOC102780733,LOC104959165 coding upstream 233655 21818053 ~ 21835351 (+)
she LOC101483326,LOC102307252,LOC102202678 coding upstream 250784 21805074 ~ 21818222 (+)
c7h1orf43 LOC104934460,LOC104959162,LOC103388199 coding upstream 301153 21764475 ~ 21767853 (+)
LOC120562069 tmem107 coding downstream 27641 22107943 ~ 22110135 (+)
krtcap2 krtcap2 coding downstream 30214 22110516 ~ 22113062 (+)
s100a10b LOC104962190 coding downstream 33817 22114119 ~ 22115560 (+)
s100w LOC104962188,LOC103388219,LOC106537129,LOC102230839 coding downstream 41402 22121704 ~ 22124437 (+)
adar adar coding downstream 87163 22167465 ~ 22183428 (+)
G74673 NA non-coding upstream 32347 22036278 ~ 22036659 (+)
LOC120562851 NA non-coding upstream 343301 21724948 ~ 21725705 (+)
G74288 NA non-coding upstream 776626 21291042 ~ 21292380 (+)
G74287 NA non-coding upstream 778692 21289553 ~ 21290314 (+)
G74286 NA non-coding upstream 779631 21289171 ~ 21289375 (+)
G74729 NA non-coding downstream 35314 22115616 ~ 22116026 (+)
G74732 NA non-coding downstream 39436 22119738 ~ 22121346 (+)
G74737 NA non-coding downstream 49350 22129652 ~ 22129914 (+)
G74760 NA non-coding downstream 103481 22183783 ~ 22184037 (+)
G74764 NA non-coding downstream 162515 22242817 ~ 22243033 (+)
G74633 tuft1,LOC102781808 other upstream 298720 21769548 ~ 21770286 (+)
them4 LOC106592246,LOC104959154,LOC101466288,LOC107096308,LOC100702377,LOC105029233,LOC106575342 other upstream 465548 21599034 ~ 21603458 (+)
crot acbd7,crot,LOC102783617,LOC101470173 other upstream 653112 21403035 ~ 21415894 (+)
LOC120563169 NA other upstream 732341 21331412 ~ 21336665 (+)
sec61b sec61b,LOC102796100 other upstream 1057592 21008013 ~ 21011414 (+)
slc50a1 slc50a1 other downstream 3367 22083669 ~ 22091963 (+)
LOC120561539 NA other downstream 52276 22132578 ~ 22136234 (+)
LOC120561537 NA other downstream 57245 22137547 ~ 22139223 (+)
snx27b snx27,LOC102196713,LOC102288812 other downstream 59478 22139780 ~ 22154684 (+)
kcnn3 kcnn3,LOC104958859,LOC106930148,LOC106962094 other downstream 117410 22197712 ~ 22248527 (+)

Expression


Co-expression Network