LOC120562882 (LOC104926221,LOC103388613,LOC103353832)


Basic Information

Item Value
gene id LOC120562882
gene name LOC104926221,LOC103388613,LOC103353832
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 13609618 ~ 13621344 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039806811.1
TTGACTGTAAACATCCTGCCGATTTTAAAAGGACAGCGGTGAGCGGGAGGAAGGCGACTGGCGCCATCTTGGCTGTTTTAATGAGTACAACAGGGGAGGATTCGCTGGGAGAAATAACATAATTATTGGAATTTCACTGTAAAAGGGGTACTGTCGGTGGACCATACAGCAGTGTGATTGTGTGAGCCAGGGGAACCAGGGCAATGTTCTACGCCCACTTTGTCCTCAGCAAGCGTGGGCCGCTGGCCAAGATCTGGCTAGCGGCCCATTGGGACAAGAAGCTGACCAAGGCCCATGTGTTTGAATGCAACTTGGAGAGCAGTGTGGAGAGCATCATCTCACCCAAGGTGAAGATGGCATTGCGTACATCAGGCCACCTGCTCCTCGGGGTGGTGAGAATCTACCACAGGAAGGCCAAGTACCTGCTTGCTGACTGTAATGAAGCCTTCATCAAGATCAAAATGGCTTTTAGACCAGGTGTGGTGGATCTACCTGAGGAAAACAGAGAGGCAGCCTACAATGCCATCACCTTACCTGAGGAGTTCCATGACTTTGACCAGCCACTTCCTGATCTGGATGACATAGATGTGGCCCAACAGTTCACCCTGAACCAGAGCAGAGTAGAAGAGATCACCATGAGGGAAGATGTTGGCAACCTCAGCCTGCTGCAGGACAATGACTTTGCTGACTTTGGTATGGATGACCGAGAGATGATGCGTGATGCCAGCACATTTGAGGAGGATATCATGCACGGTGCCACAGCCTCTAACCTTTTGCTTGAGGCTGAGCCTGGCCCAGCCAATCTCCCAGACAAGTCCAACCACATGGAGTATGATGACTTTGGGGACGGTTCAATGGGCAACAGTGATGGGGGAATGCTGGTTGATAAGCTACTGAGCTCTGAAGATGGAGGAGGTATTTTTGATGACCCTCCAGCCATCACAGAAAGTGTCATGATGCCTCGAGATCCCGGCGATGATGAGGACGACTTTGACAACCTCCAGTCACCGGGTCCAGACAGCCCAGACTCTGGCCCAGCAGAGCCACTGCCAGCAATGGCTGACCAGACGGAACAGACCACTCTGGTTCACAATGAGGAGGAGGCCTTTGCCCTGGAGCCCATTGACATCACTGTGAAAGAGACCAAGGCGAAGCGTAAGAGGAAGCTGATTGTGGACAGTGTAAAGGAGCTGGACAGTAAGACCATCAGGGCCCAGTTGTCTGACTACTCGGACATTGTCACCACCCTGGATCTCGCCCCTCCCACCAAGAAGCTTATGATGTGGAAGGAGACTGGAGGAGTGGAGAAGcttttctctctgcctgctCAGTCACTCTGGAACGCCAGGCTGCTCAAGATGTTCACACGCTGCCTGACACCCCTGGTGCCAGACGagctgaggaagaggagaaagggCGGCGAAGCAGACAGTCTGGATGAGTTCCTCAAAGAGCTGGAGAACCCAGAGGTGCCTAGAGAGGAGGTCATGAGTCAGAACAGAGATGTTATTGACCAAACTATCATGGAGGAGCCCAGTATGCTGGCAGCCTCTGCAATGGAGGGCAGTAGGACGACCCTGGATGAAACGGTCATGCCTCCTCCATCCACCCCTCGAGGTGTCAAACGCAAGACCCTCGACAAAGAGGGCACCCTTCCTATGGCTCCcttggagcagcagcagcagcaggtggcTGACCGCTCAGTCCTGTCTCAGAGGTTAGACATGCATCAGGTGGATCTTCCCCCAGAGGAGAGCAGCCTCAGCCTCACCCAGCTTGTCCCCGAGCTTGACCTGCTTGGTGAAAAGGGCAAAGACAAGAAGGATGATAGCGATGAAGAGGAGGATGAGGACGGTCAGGGTGGAGACCAGGATCAGGAGGAGAAGAGATGGAACAAGAGAACCCAGCAGATGCTGCATGGCCTCCAGCGCGTCATGGCTAAGACTGGTGCGGACTCAGTTAGCTTGCTTGAATTGTGCCGGAACAACAACAAGAAGCAGGCAGCTGCCAAGTTTTACAGTTTCCTCGTCCTCAAGAAGCAGCAAGCCATCGAGGTCACCCAGACTGAGCCCTACAGCGACATCATTGCCACCGCTGGACCAAGATTCCACCTTATTTAGACATTGGaagaacagacaaacactctGCTTGCAACAGACATACTTTTTAAATTACTCaacttttttgcctttttattttgtgttttcctgTTCCATTTTCTCTGGGGAAGGGGAGGGAGTAGTGGGGAACGGGTTggaattttaaaaacaaaacacgaTTTTACTGTACTACAGATGGAATCATGCAGTATTCAATTGGTTGAAATGGAGTGAGGAAGAATGTCTCTAACAAGTATATTTATAAATCAACCTTTTTTTCAGTCACCAATTTGTaagcttttctttattttgttttgtaagtTAAATTTCTATTGTCTGCTTATTCCATAAGTTTTGTACCATTGCCCCTCACAACGTAATTATTGCAGATTTTAGATAAAGAGCCCTGTATTTTCA

Function

NR:

description
PREDICTED: double-strand-break repair protein rad21 homolog

GO:

id name namespace
GO:0000228 nuclear chromosome cellular_component

KEGG:

id description
K06670 SCC1, MCD1, RAD21; cohesin complex subunit SCC1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039806811.1 True 2516 mRNA 0.50 14 13609618 13621344

Neighbor

gene id symbol gene type direction distance location
LOC120561886 LOC103353818,LOC102295432,LOC102785128,LOC101482972 coding upstream 191166 13414324 ~ 13418452 (+)
rspo3 rspo3,LOC103353817 coding upstream 197697 13395438 ~ 13411921 (+)
trmt11 trmt11 coding upstream 345526 13252697 ~ 13264092 (+)
LOC120561555 ncoa7,LOC104938018 coding upstream 366393 13239114 ~ 13243225 (+)
cmtm8b cmtm8 coding upstream 394263 13211579 ~ 13215355 (+)
zgc:110410 LOC104941306 coding downstream 437296 14058640 ~ 14068948 (+)
LOC120561614 NA coding downstream 962691 14584035 ~ 14588452 (+)
si:cabz01093077.1 NA coding downstream 968899 14590243 ~ 14593984 (+)
LOC120561707 NA coding downstream 979545 14600889 ~ 14603683 (+)
LOC120561930 NA coding downstream 982608 14603952 ~ 14607904 (+)
G72319 NA non-coding upstream 76616 13532125 ~ 13533002 (+)
G72314 NA non-coding upstream 126507 13475370 ~ 13483111 (+)
G72309 NA non-coding upstream 136148 13471751 ~ 13473470 (+)
LOC120562636 NA non-coding upstream 161379 13445866 ~ 13448239 (+)
G72242 NA non-coding upstream 400584 13208828 ~ 13209034 (+)
LOC120561831 NA non-coding downstream 465259 14086603 ~ 14087796 (+)
G72466 NA non-coding downstream 542192 14163536 ~ 14163744 (+)
G72520 NA non-coding downstream 893323 14514667 ~ 14517897 (+)
G72551 NA non-coding downstream 982640 14603984 ~ 14604638 (+)
G72559 NA non-coding downstream 1011736 14633080 ~ 14633375 (+)
LOC120562530 ext1,LOC103135121 other upstream 3373 13559760 ~ 13606245 (+)
prelid3a prelid3a other upstream 138102 13468211 ~ 13471516 (+)
hint3 hint3 other upstream 359508 13245668 ~ 13250110 (+)
G72204 ctnnb1,LOC103388302 other upstream 483721 13124934 ~ 13125897 (+)
LOC120562335 NA other upstream 836179 12760817 ~ 12773439 (+)
LOC120562711 eif3h other downstream 3104 13624448 ~ 13688514 (+)
LOC120561928 csmd3,LOC101478087,LOC108232275,LOC102799137,LOC102309299,LOC102195523 other downstream 132709 13754053 ~ 14046136 (+)
cmc1 cmc1 other downstream 512240 14133584 ~ 14144296 (+)
LOC120562174 rbms3,LOC101066789,LOC103370884 other downstream 554473 14175817 ~ 14370091 (+)
G72506 NA other downstream 804450 14425794 ~ 14426180 (+)

Expression


Co-expression Network