stx17 (stx17,LOC102795111)


Basic Information

Item Value
gene id stx17
gene name stx17,LOC102795111
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 21106838 ~ 21117093 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039806831.1
ATGTGCTGTGGCTGCTGGTTGAGGTCGGAAACTTTTCGTGGACGCACTGGGAAGAGTTGTAGGTTGTATACAAACAACAAGAGTATCAGAATAAAACTGAAAGCGTTGCCGAAAATTAGCAAATGTTGCGATTCGTTAATTTCTTCAACAGAATGGAGGCTCATAATAGTCATTAGCGAATATAAATTATATTCTCGAGTGATATTTCCAGTGtgtgtgtggagGCAGTGATATAAAGCTGAGCAGGTGCAGTGTATAAGTTACAAAGAGGTGTTGGTTGTGGGCAGTGAGCAGGACACATGGCAGAGGAAGGCAACAAGCTGACACTTAGGCGCCTGGAGGCACCGATCCACAAGTTCATTAAAGTGGCTCTACCCACAGACCTGGAGAGGCTACAGAAACACCACAATAACATACTGAAGTACCAACAAAGCCAGCAATGGGACCGGCTTCATCTGGAGCATATCAATGCGAGCAGAACGGTCCAGCAGTTGAGAGCTAACgtcagagagatggagaagctGTGCACACGGGTCCGTGCTGAAGACACTGACGCTCTGGAAGCGCTTGTCAAGCCAGTCAAAGACAGGGCGTCAGCCGCCGCACGAGACTTCCTGCTTTTACACTCTAATACTGTGCGTCAGCCTGCGCCACCACCTGCCGCTCAGCcttccagctgtgtgtccaaCAGTTGCCACACTGATGACGATGTGTGTGAGGAGCAAGTGTCTGGCAGGCAAATTCAGCTCCACCTTCCACAAATCCCTGCTGATCAGATTGCAGCTGAGTCCTGGGACAACCTGGAAGAGGATCTGAAGGACCTGAGTGGTTTGGTGACGGAGTTCTCTCTGCTCGTCCATTCCCAGCAGGAGAAGATCGACAGCATAGAGGACAACATCAACACAGCCGCTACCAACGTGGAGGAGGGGACCAAGAGCCtggggaagACGGTGGGCTACAAGATGGCAGTGTTGCCGGTTGCTGGGGCACTGCTGGGCGGTGTATTAGGAGGTCCACTGGGCCTGCTGGCTGGGTTCAAAGTCGCAGGGGTTGCTGCTGCTCTGGGGGGGGGCGCCCTGGGGTTTGCTGGTGGCAACCTGGTCCAGAAACACCGCAAAGCCCGAGTGGATCTACAGATGAAACGACTGACAGCACTACCACCAGAACCAGCAGCTGAACCAGAGTCGAACAAGGACAAATGACCCAACAGTTCTGGTTCGTCCGCTGACCTCAGGTGCTGACTAATCACTGAGGCTTCAGTGTTGACTGACCAATCAGAAGCACAAATTAGCCCTCCGGCGGTGTCCCGTTGCCTTAAAGAGACTCAAGCCCTGTAATAACAGCTTTACTTAGTCAGATACTTTGATGTTCGTGTGTGAATGGTTTGTTTgtgaggatgttcattttatacACACAACTGATGTTTTTATTCTGAACACAACTGAGCAGTTATATACACTGCATCTTTTAGTGTGTGGTTGGGTCAGTATGACATCACATCTCTTCTTTACTAAAAGAAATGTTTGGCACCAAATAAATGAAGTTGATTTAACAGACCCAACCATTCTGCCAAATGCTATCACTAACAACAACACTGTTCCTCATGCTATAATCTTTTTTCAGATTATTCTTTTTAACAGTGATCATGCCTCAATATTCCAAAATACAAAAAGCTGCAATAAGAATGATGTatggagaaaatgttttttttgcctaATGTCACTGTGGTGTTATCTTTAcatgaaaatgtaaattaaagtggTTGTGCTTCAATCATTCTAtaaattatactgtatatatttacagACTTGTTTTTGCAAAGTGTGAGAGCAAAATTGCACAAAAAGCACCACTGTCTAGATCACTTTAGGGACCGGAGTGGAAGAACCTGCCATGTATCGATTATACTGCTGCTGATTTTCTGCCAAATAAAATGCTTCTTTTCAACA

Function

symbol description
stx17 Predicted to enable SNAP receptor activity and SNARE binding activity. Predicted to be involved in several processes, including intracellular protein transport; vesicle docking; and vesicle fusion. Predicted to act upstream of or within autophagosome maturation; endoplasmic reticulum to Golgi vesicle-mediated transport; and endoplasmic reticulum-Golgi intermediate compartment organization. Predicted to be located in membrane. Predicted to be part of SNARE complex. Predicted to be active in autophagosome membrane; endomembrane system; and plasma membrane. Predicted to be integral component of membrane. Orthologous to human STX17 (syntaxin 17).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0016020 membrane cellular_component
GO:0005484 SNAP receptor activity molecular_function

KEGG:

id description
K08491 STX17; syntaxin 17

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039806831.1 True 1949 mRNA 0.47 7 21106838 21117093

Neighbor

gene id symbol gene type direction distance location
nr4a3 nr4a3 coding upstream 3237 21080886 ~ 21103601 (+)
LOC120562142 NA coding upstream 105196 21000271 ~ 21001642 (+)
galnt1 galnt1 coding upstream 146181 20903853 ~ 20960657 (+)
LOC120561989 atp4a coding upstream 464987 20631458 ~ 20641851 (+)
si:dkey-12j5.1 LOC103353891,LOC103388393,LOC103478624,LOC102212439,LOC102778746 coding upstream 631284 20448227 ~ 20475554 (+)
invs LOC102794544 coding downstream 12257 21129350 ~ 21151513 (+)
si:ch211-197h24.6 NA coding downstream 44577 21161670 ~ 21167686 (+)
tmem67 tmem67 coding downstream 55430 21172523 ~ 21183348 (+)
pdp1 pdp1 coding downstream 66858 21183951 ~ 21190820 (+)
rnf41l LOC102792600,LOC102077802,LOC102303797,LOC101478352,LOC102199951,LOC103373185 coding downstream 118094 21235187 ~ 21240428 (+)
G74207 NA non-coding upstream 212896 20893139 ~ 20893942 (+)
G74208 NA non-coding upstream 214183 20891684 ~ 20892655 (+)
G74205 NA non-coding upstream 265069 20840560 ~ 20841769 (+)
G74204 scrt1,LOC108241025,LOC103140879,LOC105929800,LOC103353874,LOC102233766 non-coding upstream 270090 20832323 ~ 20836748 (+)
G74145 nacad,LOC104951159 non-coding upstream 492131 20607340 ~ 20614707 (+)
G74233 NA non-coding downstream 33296 21150389 ~ 21152512 (+)
G74274 kiaa1429,LOC104941925 non-coding downstream 126136 21243229 ~ 21243567 (+)
G74286 NA non-coding downstream 172078 21289171 ~ 21289375 (+)
G74287 NA non-coding downstream 172460 21289553 ~ 21290314 (+)
G74288 NA non-coding downstream 173949 21291042 ~ 21292380 (+)
sec61b sec61b,LOC102796100 other upstream 95424 21008013 ~ 21011414 (+)
glipr2l glipr2 other upstream 501673 20600323 ~ 20605165 (+)
gra NA other upstream 780877 20322330 ~ 20325961 (+)
si:ch211-257p13.3 kifc3,LOC102783047 other upstream 879847 20214588 ~ 20226991 (+)
LOC120561838 tppp other upstream 897511 20192690 ~ 20209327 (+)
LOC120563169 NA other downstream 214319 21331412 ~ 21336665 (+)
crot acbd7,crot,LOC102783617,LOC101470173 other downstream 285942 21403035 ~ 21415894 (+)
them4 LOC106592246,LOC104959154,LOC101466288,LOC107096308,LOC100702377,LOC105029233,LOC106575342 other downstream 481941 21599034 ~ 21603458 (+)
G74633 tuft1,LOC102781808 other downstream 652455 21769548 ~ 21770286 (+)
slc50a1 slc50a1 other downstream 966576 22083669 ~ 22091963 (+)

Expression


Co-expression Network