LOC120562920 (mc5r,LOC101487483,LOC100693278,LOC102795483)


Basic Information

Item Value
gene id LOC120562920
gene name mc5r,LOC101487483,LOC100693278,LOC102795483
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 4946358 ~ 5065673 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039806870.1
TCACGATGCGTGAATCCACTAGTCTGATACTCCACAAAGGCAGCATCCAGTAAGCCACTTGTGGGAAGGACTTGAGTCACAGATCCTGCAAGAGTAGAGCAACAGTGATCTGGACCAGAGCCACAGCAGGGATGAATCTGTCTGATGAGTCCTCCTACCAAGCGGATGCGCTGCTGGGTAACTTCACCAGGGCTTACTCCTACTTTCACCTGAACTACACCCTGCCCCTTCCAATGCAACCAGAGAAGACCAGCACTTTCAAACCTGCAGCATGCGAGCAGGTCCACATTGCTGTAGAGGTCTTTCTGATCCTGGGTATCATTTCCCTGATGGAGAATATCCTGGTCATCACAGCCATAGTCAAGAACAAGAACCTCCACTCACCTATGTATTTCTTCgtctgcagTCTGGCAGTAGCAGACATGCTGGTTAGTGTGTCCAACGCCTGGGAGACCATCATCATTTACCTCCTCAACAACAGACAGCTGGTGGTGGATGATCACTTCATCCGGCAAATGGACAATGTGTTTGACTCCATGATTTGCATCTCTGTTGTGGCATCAATGTGTAGCCTGCTGGCCATCGCTGTGGACAGGTACGTCACTATCTTCTATGCACTGAGATACCACAACATCATGACAGTGAGGAGAGCCGGCTGCATTATCGGGGGAATCTGGACCTTCTGCACGGGCTGCGGGATCGTCTTCATCGTCTACTCAGACACCACCCCCGTCATCATCTGCCTGGTCTCCATGTTCTTTGCCATGCTGCTCATCATGGCCTCCCTCTACAGCCACATGTTCATGCTGGCACGTTCACACGTGAAGCGCATCGCTGCCCTGCCTGGCTACAACTCCATCCACCAGCGGGCCAGCATGAAGGGGGCCATCACGCTCACCATCCTGCTGGGGATCTTCATCGTCTGCTGGGCCCCCTTCTTCCTCCACCTGATCCTCATGATTTCATGTCCACGCAACCTCTACTGCGTGTGCTTCATGTCCCACTTCAACATGTACCTCATCCTCATCATGTGCAACTCTGTGATTGACCCACTCATCTATGCTTTCAGGAGTCAGGAGATGAGGAAAACTTTTAAGGAGATTGTCTGTTGTTACAGCCTGAGAAACATCTGTGCTCTGACAGGTAAGTATTAAGAGACACATAGACCAATGATAGGATTTGTAGGATGGAGCCTGGTCAGCCCTCAAGAAGACATGGGAGAGGGATCTAAATAATTTATTACACTGGTTGATGAGGAGTTGGACAGAATTTGCGATGTGAGGGTACAACTCATCCAGTTCAAGATTATGCATTGCTTCTCTTGGACTCCCTCCAGATTGTTCAGACTTGGTTTGAAAGACACAACAAATTGTTTGAAATGTAAGACAGAGGGCAGCTaattacttcatgtcctatggtcctgtTGTAAggtccaggggtctcatttata
>XM_039806871.1
TCACGATGCGTGAATCCACTAGTCTGATACTCCACAAAGGCAGCATCCAGTAAGCCACTTGTGGGAAGGACTTGAGTCACAGATCCTGCAAGAGAGCAACAGTGATCTGGACCAGAGCCACAGCAGGGATGAATCTGTCTGATGAGTCCTCCTACCAAGCGGATGCGCTGCTGGGTAACTTCACCAGGGCTTACTCCTACTTTCACCTGAACTACACCCTGCCCCTTCCAATGCAACCAGAGAAGACCAGCACTTTCAAACCTGCAGCATGCGAGCAGGTCCACATTGCTGTAGAGGTCTTTCTGATCCTGGGTATCATTTCCCTGATGGAGAATATCCTGGTCATCACAGCCATAGTCAAGAACAAGAACCTCCACTCACCTATGTATTTCTTCgtctgcagTCTGGCAGTAGCAGACATGCTGGTTAGTGTGTCCAACGCCTGGGAGACCATCATCATTTACCTCCTCAACAACAGACAGCTGGTGGTGGATGATCACTTCATCCGGCAAATGGACAATGTGTTTGACTCCATGATTTGCATCTCTGTTGTGGCATCAATGTGTAGCCTGCTGGCCATCGCTGTGGACAGGTACGTCACTATCTTCTATGCACTGAGATACCACAACATCATGACAGTGAGGAGAGCCGGCTGCATTATCGGGGGAATCTGGACCTTCTGCACGGGCTGCGGGATCGTCTTCATCGTCTACTCAGACACCACCCCCGTCATCATCTGCCTGGTCTCCATGTTCTTTGCCATGCTGCTCATCATGGCCTCCCTCTACAGCCACATGTTCATGCTGGCACGTTCACACGTGAAGCGCATCGCTGCCCTGCCTGGCTACAACTCCATCCACCAGCGGGCCAGCATGAAGGGGGCCATCACGCTCACCATCCTGCTGGGGATCTTCATCGTCTGCTGGGCCCCCTTCTTCCTCCACCTGATCCTCATGATTTCATGTCCACGCAACCTCTACTGCGTGTGCTTCATGTCCCACTTCAACATGTACCTCATCCTCATCATGTGCAACTCTGTGATTGACCCACTCATCTATGCTTTCAGGAGTCAGGAGATGAGGAAAACTTTTAAGGAGATTGTCTGTTGTTACAGCCTGAGAAACATCTGTGCTCTGACAGGTAAGTATTAAGAGACACATAGACCAATGATAGGATTTGTAGGATGGAGCCTGGTCAGCCCTCAAGAAGACATGGGAGAGGGATCTAAATAATTTATTACACTGGTTGATGAGGAGTTGGACAGAATTTGCGATGTGAGGGTACAACTCATCCAGTTCAAGATTATGCATTGCTTCTCTTGGACTCCCTCCAGATTGTTCAGACTTGGTTTGAAAGACACAACAAATTGTTTGAAATGTAAGACAGAGGGCAGCTaattacttcatgtcctatggtcctgtTGTAAggtccaggggtctcatttata

Function

symbol description
mc5r Predicted to enable melanocortin receptor activity. Involved in adenylate cyclase-activating G protein-coupled receptor signaling pathway. Located in plasma membrane.

NR:

description
PREDICTED: melanocortin receptor 5

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004977 melanocortin receptor activity molecular_function

KEGG:

id description
K04203 MC5R; melanocortin 5 receptor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039806870.1 True 1450 mRNA 0.49 5 4946358 5065673
XM_039806871.1 False 1447 mRNA 0.49 5 4946358 5065673

Neighbor

gene id symbol gene type direction distance location
cep192 cep192 coding upstream 375049 4474006 ~ 4571309 (+)
seh1l seh1l coding upstream 473691 4463437 ~ 4472667 (+)
LOC120561648 LOC106523394 coding upstream 1056300 3889015 ~ 3890058 (+)
ebag9 ebag9 coding upstream 1073458 3854146 ~ 3872900 (+)
tent5aa LOC104929946,LOC103354291,LOC100698511,LOC103388593 coding upstream 1442470 3499187 ~ 3503888 (+)
LOC120562247 NA coding downstream 290134 5355807 ~ 5357294 (+)
LOC120561876 NA coding downstream 747204 5812877 ~ 5814642 (+)
tsnare1 tsnare1,LOC101472715 coding downstream 1571179 6636852 ~ 6805600 (+)
LOC120562880 NA coding downstream 1938931 7004604 ~ 7029761 (+)
fzd1 fzd1,LOC104958298,LOC104925482 coding downstream 2230273 7295946 ~ 7298242 (+)
G70697 fam210a,LOC102795199 non-coding upstream 31558 4902398 ~ 4914800 (+)
G70702 NA non-coding upstream 35115 4908001 ~ 4911243 (+)
G70681 NA non-coding upstream 48856 4896295 ~ 4897502 (+)
G70688 NA non-coding upstream 67874 4878235 ~ 4878484 (+)
G70687 NA non-coding upstream 69331 4876593 ~ 4877027 (+)
LOC120562333 NA non-coding downstream 71931 5137604 ~ 5138005 (+)
G70756 NA non-coding downstream 81747 5147420 ~ 5147658 (+)
G70782 NA non-coding downstream 176003 5241676 ~ 5246140 (+)
G70787 NA non-coding downstream 208303 5273976 ~ 5274205 (+)
G70793 NA non-coding downstream 221463 5287136 ~ 5287529 (+)
LOC120562617 ldlrad4 other upstream 54301 4810388 ~ 4892057 (+)
G70654 NA other upstream 280252 4665784 ~ 4666106 (+)
trnar-ucg_13 NA other upstream 833077 4113209 ~ 4113281 (+)
trnai-aau_22 NA other upstream 833434 4112851 ~ 4112924 (+)
trnar-ucg_12 NA other upstream 834123 4112163 ~ 4112235 (+)
LOC120562244 zdhhc3,LOC103364625,LOC101488043,LOC107102987 other downstream 270541 5336214 ~ 5467090 (+)
si:ch211-198c19.1 NA other downstream 525526 5591199 ~ 5594900 (+)
G70894 NA other downstream 894782 5960455 ~ 5960854 (+)
cdk14 cdk14 other downstream 1973490 7039163 ~ 7292435 (+)
znrf2b znrf2 other downstream 2391094 7456767 ~ 7500182 (+)

Expression


Co-expression Network