gpd1l (gpd1l,LOC103034694,LOC108434205,LOC107600618)


Basic Information

Item Value
gene id gpd1l
gene name gpd1l,LOC103034694,LOC108434205,LOC107600618
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 8029682 ~ 8046678 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039806873.1
ACGTCATCAGAAGAAGACGCGCACtgtgcagccagcagcagccagccagccagccagctcgCGAGGCCGTGGGCAGCTCGTGTATGGGTCTGGATTCTGTGGCCCGGTCGTCGGGAAGCATCAGCATGGCTGCTCCGCTCAGAGTGTGCATAGTGGGCTCTGGAAACTGGGGCTCGGCCATCGCCAGGATCATTGGAAATAACGCCACGTCGCTGCGCTTTGCCACCACCGTGAAGATGTGGGTGTACGAGGAGAACATCGATGGCAGGAAGCTCACTGACATCATCAACACGGAGCATGAGAACGTCAAGTACCTGCCGGGATACAAACTGCCAGAGAACGTGGTGGCTGTCCCCAAGCTGCGGGACGCCGCAGAGGGAGCGGACCTGCTGGTGTTCGTGGTCCCTCACCAGTTCATCCGGAATCTCTGTGACGAGATGGTGGGCTGTGTCTCCACCAAGGCTCGGGGAATCACACTCATAAAGGGTATAGACGAGGGCCCCGGGGGCCTAAAGCTCATCTCCGACATCATCCGAGAGAAGATGGGGATTGACGTCAGCGTCCTCATGGGAGCAAACATCGCCAATGAGGTGGCAGCGGAGAAGTTCTGCGAGACCACCATCGgcagTAGGATTCTGGAGAACGGCCTGCTGTTCAAAGAGCTGCTGCAGACTCCAAACTTCCGAATCACAGTGGTAGATGATGCCGACACAGTGGAGCTGTGTGGAGCTCTGAAGAACATCGTGGCGGTGGGCGCAGGCTTCTGCGACGGCCTGCAGTGCGGCGACAACACCAAGGCAGCGGTGATCCGTCTGGGGCTGATGGAGATGATAGCCTTCGCTAAGCTCTTCTCCAAGAACGGCTCCGTTTCCACGGCGACCTTTCTGGAGAGCTGCGGCGTGGCCGACCTCATCACCACGTGCTACGGCGGTCGCAATCGACGAGTGGCAGAGGCCTTCTGCAAGACGGGGAAGAGCATCGTGGAGCTGGAGAAGGAGATGCTGAACGGTCAGAAGCTGCAGGGTCCTGCCACCTCAGCCGAGGTCTACCACATCCTCCAGCAGAAGGGCCTGCTGGACAAGTTCCCTCTGTTCACAGCCGTCTATCACATTTGTTTCGAGGGGAAGCCGGTCCAGCAGATGATCTCGTGCCTGCAGAGCCACCCGGAGCACCGGTGATTGGCCCGCTGGAGGGAGCCGCACTGCTGGACGCGTTCACACCAACAACATCACCAGCATCAGCTACTAatgctatcaatcaatcaaacaaacaaacaagcccAACCGCTTGATTTCTGGACTGACCCCCTGTGAGCTAAAATTCTCCAGTGGCTTTTGGAATATCAACATAATATCTATAACGTAAGAGACAGTGTCCTTTATCAACTCAAGTTAAACTAATGTGGTACAATAGAGGGAAACTGATCTAAAAAAAAGTCCTTGATGTTCTAAGATGGTGTTCTACATACATGTTGGGACTGCTGCACTCTGTAATTACAGGTTTTAACTTGCTTGTTTTTGAACTTTTGCATATTTGCAGGTTTGTGACCAAATGTTTGAAATGTAACCTGTGTTGGTATTGTGACAGTGCAGTGGTTTTTGTCAATGACTTGTAACCAGCAGCCGTCAGCAGCCTGGGTACCTGCATCTGCATCAGACTGGCGGTCAATGGATCTCCTCCTCAGCCTCATCTCTTACACTTATTAACATATCTGTTTCAGTATTTGTAGAACCTCACAGGGTTTGGATTCATATGTTTGccctgacataaaaaaaaaaatttagcaGTGGAAATGCCTTTGGATAAACCAGCAGCGGCTCAGTGTTAAATATCTCAGGCATATTTCTGGGAGCTTTTCTCTTGAAACTGCCAAACTTTTTGCGTAGTAGTAGTAAGTCATAAAGATCACACGGAGCTGTTTTATCTGTACCTGTTTGGTTGAGTAGACTCCTGTCGCTaatctgtatctgtatttttttttttttttttcattgttattttatatcTGTTTTTGCTAGTTGGTTCTACTGTTATTGGGTCTTATTTTCAACAAATTTGTCTCTTgggaagcactttgtgacttggTAAAAGGTGCTACtgtatattaaaggtcccatgacatgctg

Function

symbol description
gpd1l Predicted to enable NAD binding activity; glycerol-3-phosphate dehydrogenase [NAD+] activity; and protein homodimerization activity. Predicted to act upstream of or within carbohydrate metabolic process and glycerol-3-phosphate catabolic process. Predicted to be located in cytoplasm. Predicted to be part of glycerol-3-phosphate dehydrogenase complex. Predicted to be active in cytosol. Human ortholog(s) of this gene implicated in Brugada syndrome 2. Orthologous to human GPD1L (glycerol-3-phosphate dehydrogenase 1 like).

NR:

description
glycerol-3-phosphate dehydrogenase 1-like protein

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0046168 glycerol-3-phosphate catabolic process biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0009331 glycerol-3-phosphate dehydrogenase complex cellular_component
GO:0042803 protein homodimerization activity molecular_function
GO:0051287 NAD binding molecular_function
GO:0004367 glycerol-3-phosphate dehydrogenase [NAD+] activity molecular_function

KEGG:

id description
K00006 GPD1; glycerol-3-phosphate dehydrogenase (NAD+)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039806873.1 True 2126 mRNA 0.51 8 8029682 8046678

Neighbor

gene id symbol gene type direction distance location
LOC120563115 LOC104936139,LOC100707989,LOC101475232,LOC102313234 coding upstream 125107 7885697 ~ 7904575 (+)
rbm42 rbm42 coding upstream 246200 7767759 ~ 7783482 (+)
LOC120561799 NA coding upstream 288648 7731826 ~ 7741034 (+)
LOC120561797 NA coding upstream 322091 7665238 ~ 7707591 (+)
fzd1 fzd1,LOC104958298,LOC104925482 coding upstream 731440 7295946 ~ 7298242 (+)
tcaim tcaim coding downstream 1782 8048460 ~ 8059416 (+)
LOC120561723 NA coding downstream 37222 8083900 ~ 8089659 (+)
LOC120561722 NA coding downstream 44974 8091652 ~ 8096292 (+)
LOC120561724 fam26e,LOC103478772 coding downstream 49683 8096361 ~ 8104392 (+)
LOC120561897 NA coding downstream 57571 8104249 ~ 8104849 (+)
G71204 osbpl10 non-coding upstream 48776 7972862 ~ 7980906 (+)
G71176 NA non-coding upstream 154082 7871517 ~ 7875600 (+)
G71148 NA non-coding upstream 227667 7796341 ~ 7802015 (+)
G71150 NA non-coding upstream 285681 7742632 ~ 7744001 (+)
LOC120561796 NA non-coding upstream 369597 7656163 ~ 7660085 (+)
G71200 NA non-coding downstream 272 8046950 ~ 8047669 (+)
G71211 NA non-coding downstream 2357 8049035 ~ 8059805 (+)
G71201 NA non-coding downstream 13432 8060110 ~ 8060801 (+)
G71220 NA non-coding downstream 21377 8068055 ~ 8069124 (+)
G71226 NA non-coding downstream 56606 8103284 ~ 8111425 (+)
G71147 LOC103388722,LOC104941093,LOC103369890 other upstream 228302 7731022 ~ 7801380 (+)
znrf2b znrf2 other upstream 529500 7456767 ~ 7500182 (+)
cdk14 cdk14 other upstream 737247 7039163 ~ 7292435 (+)
G70894 NA other upstream 2068828 5960455 ~ 5960854 (+)
si:ch211-198c19.1 NA other upstream 2434782 5591199 ~ 5594900 (+)
G71309 NA other downstream 74923 8121601 ~ 8122239 (+)
ano10a ano10 other downstream 236702 8283380 ~ 8309744 (+)
G71470 rrp15,LOC106584165,LOC106605018 other downstream 702265 8748943 ~ 8751443 (+)
LOC120561899 LOC104959271 other downstream 713368 8760046 ~ 8776508 (+)
trnay-gua_1 NA other downstream 763673 8810351 ~ 8810439 (+)

Expression


Co-expression Network