LOC120562955 (LOC102233830,LOC107102542,LOC103371668,LOC108241910,LOC101156432,LOC107378666,LOC101063201,LOC103388495,LOC102205547)


Basic Information

Item Value
gene id LOC120562955
gene name LOC102233830,LOC107102542,LOC103371668,LOC108241910,LOC101156432,LOC107378666,LOC101063201,LOC103388495,LOC102205547
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 19198520 ~ 19204699 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039806917.1
GTGGAAGAGGGAGCTACAATATCCcccatgaaaaagaaaaaaggacagCGCCCTCTGCAGGAGAGGCTGTTCGCACTAAGCTCTTGATACTAAGCATCGCCATATTGACGTCCCAACAACGCTGAGAGGAGGAGATACTGCCTTGGTGTAGCCCCCAGTGATGACTGTATTGAGCCCTGTACCTCCTGATTAGACTGGTTGGATGCCCCCATTTAACATTCAGCTTTCTTATTATAAAGGCATCTCAACTGCTCTTGTTTGAAATCATCTAACACCATCATCCTGGAGGGAACCTCccaggaGATTTAGAGAAGACCCTGTGTAGAATATGTCTGGCCCTGTCCCAAGCCGCTCTCGAGTTTACCCTGatgtaaacacacagagaccTCGGGAATATTGGGACTACGAGTCCCATGTTGTTGAATGGGGgaaCCAAGACGACTATCAGCTAGTCAGAAAACTAGGGAGAGGCAAATATAGTGAAGTGTTTGAAGCCATAAACATCACAAACAATGAAAAAGTGGTCGTCAAAATACTGAAGCCggtcaagaaaaagaaaatcaagaGAGAAATTAAGATCCTGGAGAATCTGAGGGGTGGCCCAAATATCATCTCACTGTTAGATATCGTCAAGGATCCTGTGTCCCGAACCCCTGCTCTGGTCTTTGAACATGTGAACAACACAGATttcaagCAATTGTATCAAACCCTATCTGACTTTGACATACGGTTCTACATGTACGAAATCTTAAAGGCTCTGGATTACTGCCACAGTATGGGGATTATGCACAGAGATGTCAAGCCACACAATGTAATGATTGATCATGAACACAGAAAGCTCCGCCTAATTGATTGGGGTTTGGCAGAATTCTACCACCCTAACCAGGAATACAACGTGAGAGTGGCATCCAGGTACTTCAAAGGACCTGAACTGCTGGTAGACTACCAGATGTATGACTACAGCTTGGACATGTGGAGTTTGGGTTGCATGCTCGCCAGCATGATCTTCAGAAAGGAGCCTTTCTTTCACGGTCATGACAACTATGATCAGCTTGTGCGAATTGCAAAAGTACTCGGCACCGAGGACCTGTACGACTACATTGACAAGTACAACATTGAATTGGATCCACGGTTCAACGACATTCTCGGAAGACACTCCCGCAAAAGGTGGGAGAGGTTTGTGCACAGCGAGAACCAGCACCTGGTCAGCACAGAGGCTCTGGACTTCCTGGACAAACTGCTGCGCTATGACCATCAAGCCCGCCTCACGGCCAGAGAGGCCATGGATCACCCCTACTTCTATCCCATCGTTAAAGATCAGGGAAGAGGGGCAACTCCGGGAGGGATGGCTGCAAGCTCCACACCAGTCAGCTCCTCAAGTATGATGGCCGGCATCACCTCAATGTCCTCCTCACAGCCACTGGCTAACATTGCTGGATCACCTGTCATCTCTGCTCCCAACACCCTGGCCACACAAGTCCCTGCAGCCACCGGGGCTCAACCCTGAAGCCACTTCCTCACCCGTGTTTATGTGTGCTCATGGCCATGTCCTGCCTAGCTCTTACTGCGGCCCAGGGCCATGGCTCCCctttttatgttgaaaataaCAAGGAAGAAGATTTAAATTGCTTTTCACATTCAGTTATATTTTGACACCTGGACTTGACAGAAATGTATTGTTGCACCTGTCAGGATTATTAGAATTAATTTGGGTGTGTTATTTGACAATGCCATTGTCTAGAAACTTCTAATAAGATGTAGACCTGAAGAGAATGGATAATaaaatttattttgtatgttCCAAATATACAGTCTTGCTTGAAACTGTTTGATGGGGATCCTGCTGTATTACACTGTGAACCTTTACAAGACTTCACAAAACAGAGTCAGGAATCTGGTGTGCCCCACCTAACAGTGCTCGCTGGTTGCACACAATGTAATGTGCAGGAGTTGTTGGTGTTTTGAAGTTGTTAGATGCTATAATTCTTTAATTGGACTTTTGTAGATATTCTACAGTTACTGTCAGGTTGCATGCACCCAATGCTGAGTATCACAGGGTCAATAGTTTGCCAATTTTATCTTACTTTCACttctatatgtgtatgtatgtgttcatgtttgttttttatgaagTCTCTTACACTTGATTTTGATTACATAgacaattttgtaactttttgttttatgttgggAGGAGTCATCACCTACAAAAACAACttcaaaaataaacaatttaaacAGGGCTTTGCAGGCACTACATGTTA

Function

NR:

description
casein kinase II subunit alpha

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K03097 CSNK2A; casein kinase II subunit alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039806917.1 True 2264 mRNA 0.45 15 19198520 19204699

Neighbor

gene id symbol gene type direction distance location
LOC120562651 tyrobp coding upstream 3714 19193475 ~ 19194806 (+)
LOC120562624 fcgbp coding upstream 50727 19129524 ~ 19147793 (+)
LOC120561940 NA coding upstream 77819 19116593 ~ 19120701 (+)
fxyd5 NA coding upstream 97446 19095468 ~ 19101074 (+)
nphs1 nphs1 coding upstream 108561 19021154 ~ 19089959 (+)
LOC120562665 NA coding downstream 899 19205598 ~ 19211398 (+)
LOC120562666 LOC102206297,LOC106517725,LOC104965579 coding downstream 6796 19211495 ~ 19220952 (+)
LOC120562959 NA coding downstream 40659 19245358 ~ 19269769 (+)
LOC120563155 NA coding downstream 73616 19278315 ~ 19280622 (+)
rxrbb LOC104965568,LOC103368225,LOC101470553,LOC100711502 coding downstream 124251 19328950 ~ 19339714 (+)
LOC120562631 fxyd7,LOC103388498 non-coding upstream 35716 19159464 ~ 19162804 (+)
LOC120562629 NA non-coding upstream 39502 19158475 ~ 19159018 (+)
LOC120562630 NA non-coding upstream 40151 19148521 ~ 19158369 (+)
G73568 NA non-coding upstream 72672 19125156 ~ 19125848 (+)
G73501 aplp1 non-coding upstream 266347 18911394 ~ 18932173 (+)
G73586 csnk2b,LOC102207154,LOC106573472,LOC101175345,LOC104925497,LOC102778826 non-coding downstream 68028 19272727 ~ 19276516 (+)
G73606 NA non-coding downstream 114739 19319438 ~ 19320048 (+)
LOC120562732 NA non-coding downstream 249070 19453769 ~ 19456616 (+)
LOC120562701 NA non-coding downstream 409804 19614503 ~ 19625611 (+)
G73776 hdac9 non-coding downstream 430174 19634873 ~ 19639459 (+)
hcst LOC104925504,LOC104961397 other upstream 6418 19190020 ~ 19192102 (+)
G73570 LOC103371659 other upstream 39525 19148613 ~ 19158995 (+)
kmt2bb kmt2b other upstream 336562 18833245 ~ 18861958 (+)
proser3 NA other upstream 369832 18819201 ~ 18828688 (+)
LOC120562824 NA other upstream 451845 18744662 ~ 18746675 (+)
si:ch211-254p10.2 LOC102209663,LOC101158134,LOC102295699,LOC101064473 other downstream 242468 19447167 ~ 19453283 (+)
G73779 hdac9 other downstream 442276 19646975 ~ 19649511 (+)
LOC120561838 tppp other downstream 987991 20192690 ~ 20209327 (+)
si:ch211-257p13.3 kifc3,LOC102783047 other downstream 1009889 20214588 ~ 20226991 (+)
gra NA other downstream 1117631 20322330 ~ 20325961 (+)

Expression


Co-expression Network