brd9 (brd9)


Basic Information

Item Value
gene id brd9
gene name brd9
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 20170616 ~ 20178125 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039806951.1
GCCGTTAGCTTAGCTTTCTTGTTGCAAAGATTTGTTGCAAGTAGCTAGTGTTACGCCTGCGACCAGTGGCAACATAATTGGTATAAACACACGTCTTTGGATATAAATAGGAAGagatggggaaaaaacacaagaagCATAAACCGGAGTGGAGAACAGTTGATGACTATGAGGACAAGGCTCTTGAGAAGCCCCTGaagcttgtgctcaaagttggAGGAAGTGAGGTGACAGAGCTCTCTGGTTCGGGCCATGACTCTAGCTACTACGATGACAGATCAGACCATGAGCGAGAACGccacaaagagaaaaagaagaagaagaagaaaaagtctGAAAAGGATAAAGACAAATACGTGGATGATGACGAGAGAAGACGGCGGAAGgaggaaaagaggaagaagagagagcgagagcagaATGAATTAGAGGCAACAGCCTCTACTGCTGCAACAAGCGTTGGTGTGCCTGTTGAACCTTTCACATTACCAAAAAGTTTAAGTATTGGATTAGAGccggaagagaagaaaaagaagagagagagagagtttgagcTAGAGCCTGAAGAGGATGAATTTCACTCCAGTATGAAGTTGGATTTAGAACAGCAAGGAGACAGGCCGGTCCGAGCATGCAGGACACAACAAGAGAGTGAATGCACTCCTCGTCAACAACTCCTAGAACACTTTCTGAGGCAGTTGCAGAGGAAAGACCCCCATGGATTCTTCTCATTTCCAGTAACAGATGCAATTGCTCCTGGTTACTCAATGATCATCAAACATCCTATGGACTTCAGCACCATGAAAGACAAGATTAGAAACAATGACTACAATACGGTTACAGAATTCAAGGCGGACTTTAAATTGATGTGTGACAATGCCATGGTGTACAACCGACCAGAGACTGTCTATTACAAGGCTGCCAAGAAACTACTCCACACAGGATTCAAGATGATGAGCAAGGAGCGGCTGTTGGCTCTGAAACGCAGCATGTCTTTCATGCAGGACATGGACTACACCCAGCAGGCAGCCATTTTGGGAGATGAAGACCTTGCAGCTGATATACCTCCTCCAGAGACAATCCCCAGCCCAGTGGAATCAGCTAAAAAGTCCAAGAAACAACCAGTCAAAGACATGAAGGAAGTCATCAGTTACCTGTTTGAACCGGAGGGAAACGCTTGCAGCTTGACTGACAGTACAGCAGAGGAGCATGTCCTGGCACTCGTTGAGCATTCTGCAGATGAAGCTCGGGATCGGATCAACAGATACATGCCCAACTCTAAGATGGGCTACTTACGTAAAGAACCAGACAGTTCTCTTCTATATACGGTTGTAAATCAGCTTGATCCTGATGCAGAAGAAGAGGAGACTCATAAAGTGGACCTGAGTTCTCTGTCAAATAAGCTTCTGCCTGGCTTGACAACCTTGGGTTTCAAAGATGACAGGAGACACAAAGTAACGTTTCTGAGCAGTGCTTACAACATTCAGACCCTTCAGAAGAACTCCGTCTTCCCAGACCTGCTACCTGATGAGGTGGACACGCTCTATTCAGCCTATGGTGATGACACAGGGGTACAATGTGCCCTGAGCATACAGGAGTTTGTCAAGGGCTGCGGAGGTGTCACAAAGCGCTGGGTCGACAGGCTTCTGGACAAGATGACCGCAGACGATCACACTAAAGCTGTCAGTCAAATCCGACAGAGAAGAAACATCCCGCTAAAACCCGATGAAACCAAATCCAACATCTGTGACATGCAGATGGCAGATGGCACTGGCCTGGGAGAGAGCGGCTCAGTCCTGGACTTCATGTCAATGAAGAGCTATCCTGATATGTCTCTGGATATATCCATGCTGAACTCATTAGgtaaaacagtgaaaaaagagCCAGGCAACGATGAGGGCCAGCAGCAATTTGACGAGGCGGACAAACTCCTGCAGGAGTTCCAAGAGGCTCAGGTGGACAGAGTTGGCTCCAGACCCTCGTCCAACCTGTCCTCCCTCTCTAATGCCTCAGAGAGGGACCAGCACCACTTAGGTATCTGCAAAAGGAGGAGCCCATCACATCTGGGCGTTGGGGACCAGTCTGAAATGGTTCATGATCCCTACGAGTTCCTGCAATCTCCGGAGCCAGAGAGCACAGCCAACAGCTGACCACACACACTACCATGTAGTTATCCTGGTATTAACAACACTGGGTAACATGTCTTAGACTGTTTAAATATTATGGAGACAGCAGGAGCCTCTGACCTGTTTTAAAGACTCAATATGATTGTACAGAGTGTTTTTAGTGTAATTGTATGATTTTGTATGAGTGCAACACTTGAAAAATAAATGCTTGCACCtgtatttaaaaa
>XM_039806952.1
GCCGTTAGCTTAGCTTTCTTGTTGCAAAGATTTGTTGCAAGTAGCTAGTGTTACGCCTGCGACCAGTGGCAACATAATTGGTATAAACACACGTCTTTGGATATAAATAGGAAGagatggggaaaaaacacaagaagCATAAACCGGAGTGGAGAACAGTTGATGACTATGAGGACAAGGCTCTTGAGAAGCCCCTGaagcttgtgctcaaagttggAGGAAGTGAGGTGACAGAGCTCTCTGGTTCGGGCCATGACTCTAGCTACTACGATGACAGATCAGACCATGAGCGAGAACGccacaaagagaaaaagaagaagaagaagaaaaagtctGAAAAGGATAAAGACAAATACGTGGATGATGACGAGAGAAGACGGCGGAAGgaggaaaagaggaagaagagagagcgagagcagaATGAATTAGAGGCAACAGCCTCTACTGCTGCAACAAGCGTTGGTGTGCCTGTTGAACCTTTCACATTACCAAAAAGTTTAAGTATTGGATTAGAGccggaagagaagaaaaagaagagagagagagagtttgagcTAGAGCCTGAAGAGGATGAATTTCACTCCAGTATGAAGTTGGATTTAGAACAGCAAGGAGACAGGCCGGTCCGAGCATGCAGGACACAACAAGAGAGTGAATGCACTCCTCGTCAACAACTCCTAGAACACTTTCTGAGGCAGTTGCAGAGGAAAGACCCCCATGGATTCTTCTCATTTCCAGTAACAGATGCAATTGCTCCTGGTTACTCAATGATCATCAAACATCCTATGGACTTCAGCACCATGAAAGACAAGATTAGAAACAATGACTACAATACGGTTACAGAATTCAAGGCGGACTTTAAATTGATGTGTGACAATGCCATGGTGTACAACCGACCAGAGACTGTCTATTACAAGGCTGCCAAGAAACTACTCCACACAGGATTCAAGATGATGAGCAAGGAGCGGCTGTTGGCTCTGAAACGCAGCATGTCTTTCATGCAGGACATGGACTACACCCAGCAGGCAGCCATTTTGGGAGATGAAGACCTTGCAGCTGATATACCTCCTCCAGAGACAATCCCCAGCCCAGTGGAATCAGCTAAAAAGTCCAAGAAACAACCAGTCAAAGACATGAAGGAAGTCATCAGTTACCTGTTTGAACCGGAGGGAAACGCTTGCAGCTTGACTGACAGTACAGCAGAGGAGCATGTCCTGGCACTCGTTGAGCATTCTGCAGATGAAGCTCGGGATCGGATCAACAGATACATGCCCAACTCTAAGATGGGCTACTTACGTAAAGAACCAGACAGTTCTCTTCTATATACGGTTGTAAATCAGCTTGATCCTGATGCAGAAGAGGAGACTCATAAAGTGGACCTGAGTTCTCTGTCAAATAAGCTTCTGCCTGGCTTGACAACCTTGGGTTTCAAAGATGACAGGAGACACAAAGTAACGTTTCTGAGCAGTGCTTACAACATTCAGACCCTTCAGAAGAACTCCGTCTTCCCAGACCTGCTACCTGATGAGGTGGACACGCTCTATTCAGCCTATGGTGATGACACAGGGGTACAATGTGCCCTGAGCATACAGGAGTTTGTCAAGGGCTGCGGAGGTGTCACAAAGCGCTGGGTCGACAGGCTTCTGGACAAGATGACCGCAGACGATCACACTAAAGCTGTCAGTCAAATCCGACAGAGAAGAAACATCCCGCTAAAACCCGATGAAACCAAATCCAACATCTGTGACATGCAGATGGCAGATGGCACTGGCCTGGGAGAGAGCGGCTCAGTCCTGGACTTCATGTCAATGAAGAGCTATCCTGATATGTCTCTGGATATATCCATGCTGAACTCATTAGgtaaaacagtgaaaaaagagCCAGGCAACGATGAGGGCCAGCAGCAATTTGACGAGGCGGACAAACTCCTGCAGGAGTTCCAAGAGGCTCAGGTGGACAGAGTTGGCTCCAGACCCTCGTCCAACCTGTCCTCCCTCTCTAATGCCTCAGAGAGGGACCAGCACCACTTAGGTATCTGCAAAAGGAGGAGCCCATCACATCTGGGCGTTGGGGACCAGTCTGAAATGGTTCATGATCCCTACGAGTTCCTGCAATCTCCGGAGCCAGAGAGCACAGCCAACAGCTGACCACACACACTACCATGTAGTTATCCTGGTATTAACAACACTGGGTAACATGTCTTAGACTGTTTAAATATTATGGAGACAGCAGGAGCCTCTGACCTGTTTTAAAGACTCAATATGATTGTACAGAGTGTTTTTAGTGTAATTGTATGATTTTGTATGAGTGCAACACTTGAAAAATAAATGCTTGCACCtgtatttaaaaa
>XM_039806953.1
atggggaaaaaacacaagaagCATAAACCGGAGTGGAGAACAGTTGATGACTATGAGGACAAGGCTCTTGAGAAGCCCCTGaagcttgtgctcaaagttggAGGAAGTGAGGTGACAGAGCTCTCTGGTTCGGGCCATGACTCTAGCTACTACGATGACAGATCAGACCATGAGCGAGAACGccacaaagagaaaaagaagaagaagaagaaaaagtctGAAAAGGATAAAGACAAATACGTGGATGATGACGAGAGAAGACGGCGGAAGgaggaaaagaggaagaagagagagcgagagcagaATGAATTAGAGGCAACAGCCTCTACTGCTGCAACAAGCGTTGGTGTGCCTGTTGAACCTTTCACATTACCAAAAAGTTTAAGTATTGGATTAGAGccggaagagaagaaaaagaagagagagagagagtttgagcTAGAGCCTGAAGAGGATGAATTTCACTCCAGTATGAAGTTGGATTTAGAACAGCAAGGAGACAGGCCGGTCCGAGCATGCAGGACACAACAAGAGAGTGAATGCACTCCTCGTCAACAACTCCTAGAACACTTTCTGAGGCAGTTGCAGAGGAAAGACCCCCATGGATTCTTCTCATTTCCAGTAACAGATGCAATTGCTCCTGGTTACTCAATGATCATCAAACATCCTATGGACTTCAGCACCATGAAAGACAAGATTAGAAACAATGACTACAATACGGTTACAGAATTCAAGGCGGACTTTAAATTGATGTGTGACAATGCCATGGTGTACAACCGACCAGAGACTGTCTATTACAAGGCTGCCAAGAAACTACTCCACACAGGATTCAAGATGATGAGCAAGGAGCGGCTGTTGGCTCTGAAACGCAGCATGTCTTTCATGCAGGACATGGACTACACCCAGCAGGCAGCCATTTTGGGAGATGAAGACCTTGCAGCTGATATACCTCCTCCAGAGACAATCCCCAGCCCAGTGGAATCAGCTAAAAAGTCCAAGAAACAACCAGTCAAAGACATGAAGGAAGTCATCAGTTACCTGTTTGAACCGGAGGGAAACGCTTGCAGCTTGACTGACAGTACAGCAGAGGAGCATGTCCTGGCACTCGTTGAGCATTCTGCAGATGAAGCTCGGGATCGGATCAACAGATACATGCCCAACTCTAAGATGGGCTACTTACGTAAAGAACCAGACAGTTCTCTTCTATATACGGTTGTAAATCAGCTTGATCCTGATGCAGAAGAAGAGGAGACTCATAAAGTGGACCTGAGTTCTCTGTCAAATAAGCTTCTGCCTGGCTTGACAACCTTGGGTTTCAAAGATGACAGGAGACACAAAGTAACGTTTCTGAGCAGTGCTTACAACATTCAGACCCTTCAGAAGAACTCCGTCTTCCCAGACCTGCTACCTGATGAGGTGGACACGCTCTATTCAGCCTATGGTGATGACACAGGGGTACAATGTGCCCTGAGCATACAGGAGTTTGTCAAGGGCTGCGGAGGTGTCACAAAGCGCTGGGTCGACAGGCTTCTGGACAAGATGACCGCAGACGATCACACTAAAGCTGTCAGTCAAATCCGACAGAGAAGAAACATCCCGCTAAAACCCGATGAAACCAAATCCAACATCTGTGACATGCAGATGGCAGATGGCACTGGCCTGGGAGAGAGCGGCTCAGTCCTGGACTTCATGTCAATGAAGAGCTATCCTGATATGTCTCTGGATATATCCATGCTGAACTCATTAGgtaaaacagtgaaaaaagagCCAGGCAACGATGAGGGCCAGCAGCAATTTGACGAGGCGGACAAACTCCTGCAGGAGTTCCAAGAGGCTCAGGTGGACAGAGTTGGCTCCAGACCCTCGTCCAACCTGTCCTCCCTCTCTAATGCCTCAGAGAGGGACCAGCACCACTTAGGGAGCCCATCACATCTGGGCGTTGGGGACCAGTCTGAAATGGTTCATGATCCCTACGAGTTCCTGCAATCTCCGGAGCCAGAGAGCACAGCCAACAGCTGACCACACACACTACCATGTAGTTATCCTGGTATTAACAACACTGGGTAACATGTCTTAGACTGTTTAAATATTATGGAGACAGCAGGAGCCTCTGACCTGTTTTAAAGACTCAATATGATTGTACAGAGTGTTTTTAGTGTAATTGTATGATTTTGTATGAGTGCAACACTTGAAAAATAAATGCTTGCACCtgtatttaaaaa

Function

symbol description
brd9 Predicted to enable lysine-acetylated histone binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within chromatin organization. Predicted to be active in nucleus. Is expressed in brain and liver. Orthologous to human BRD9 (bromodomain containing 9).

NR:

description
PREDICTED: bromodomain-containing protein 9

GO: NA

KEGG:

id description
K22184 BRD9; bromodomain-containing protein 9

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039806951.1 True 2353 mRNA 0.46 17 20170616 20178125
XM_039806952.1 False 2350 mRNA 0.47 17 20170616 20178125
XM_039806953.1 False 2222 mRNA 0.47 17 20170732 20178125

Neighbor

gene id symbol gene type direction distance location
si:ch211-269k10.4 NA coding upstream 77308 20088865 ~ 20093308 (+)
gsdmeb NA coding upstream 181869 19978757 ~ 19988747 (+)
osbpl3b osbpl3,LOC102198167 coding upstream 193622 19947456 ~ 19976994 (+)
LOC120561951 NA coding upstream 225441 19942987 ~ 19945175 (+)
skap2 NA coding upstream 278637 19881877 ~ 19891979 (+)
zdhhc11 NA coding downstream 459 20178584 ~ 20184495 (+)
nbeal2 nbeal2 coding downstream 63479 20241604 ~ 20275511 (+)
nradd LOC104940332,LOC103360043 coding downstream 100368 20278493 ~ 20287448 (+)
rbm12bb LOC104957629 coding downstream 136150 20314275 ~ 20321879 (+)
upp1 upp1,LOC104968262,LOC104940328 coding downstream 148821 20326946 ~ 20331729 (+)
G73871 NA non-coding upstream 118610 20019109 ~ 20052006 (+)
G73881 NA non-coding upstream 124236 20040871 ~ 20046380 (+)
G73836 NA non-coding upstream 350025 19820235 ~ 19820591 (+)
G73776 hdac9 non-coding upstream 531157 19634873 ~ 19639459 (+)
LOC120562701 NA non-coding upstream 545005 19614503 ~ 19625611 (+)
G74067 NA non-coding downstream 136359 20314484 ~ 20318117 (+)
G74081 NA non-coding downstream 162216 20340341 ~ 20340927 (+)
G74091 NA non-coding downstream 224698 20402823 ~ 20423897 (+)
G74116 NA non-coding downstream 298039 20476164 ~ 20476367 (+)
G74119 NA non-coding downstream 306585 20484710 ~ 20484943 (+)
G73779 hdac9 other upstream 521105 19646975 ~ 19649511 (+)
si:ch211-254p10.2 LOC102209663,LOC101158134,LOC102295699,LOC101064473 other upstream 717333 19447167 ~ 19453283 (+)
hcst LOC104925504,LOC104961397 other upstream 978514 19190020 ~ 19192102 (+)
G73570 LOC103371659 other upstream 1011621 19148613 ~ 19158995 (+)
kmt2bb kmt2b other upstream 1308658 18833245 ~ 18861958 (+)
LOC120561838 tppp other downstream 14565 20192690 ~ 20209327 (+)
si:ch211-257p13.3 kifc3,LOC102783047 other downstream 36463 20214588 ~ 20226991 (+)
gra NA other downstream 144205 20322330 ~ 20325961 (+)
glipr2l glipr2 other downstream 422198 20600323 ~ 20605165 (+)
sec61b sec61b,LOC102796100 other downstream 829888 21008013 ~ 21011414 (+)

Expression


Co-expression Network