irx2a (irx2,LOC102783739)


Basic Information

Item Value
gene id irx2a
gene name irx2,LOC102783739
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 15408178 ~ 15414047 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039806960.1
CCACTGGCTCCTTCCCCCCTAACTCCTCACTTCATAGTGCTGCGTACTAAAAACATCGGACGCTAGGGGATCAAGACGCATGCCACATTGCCTCTATGTGGGCACTTTAACAGATCTTTCGGggttttttttcccagtaaGGGGGCTGTGGAGGGAgtgggactttttttttattctcattgTCTGATGACTGTTTGCACGGCTGATTATTGAGTTGattgtttattattttggtTGTTGCTCGCCGCCCTGCGCGTTTTTTCCTCCCTTTTTGGAATCGGCGACCTATCCCGCGCTCACCAATGTCCTATCCTCAGGGTTACCTCTACCAGCCCCCGGGCTCTCTGGCTCTTTATTCGTGTCCGGCTTACGGGGCCTCGGCTCTGGCTGCCCCGCGGAATGAAGACTTGGCGAGGTCGTCCTCTGGCTCAGCCTTCAGTCCTTACCCTGGATCGGCTGCTTTCACCGCCTCTGCCAGTGCAGGCTTCTCCAGTCCACTGTCATACTCCACGGATCCAACTACTGGATTCCCATCCTACATGAGCTCTCCATATGACGCACACACGTCGGGCATGGCCGGGGCATTAAGTTACCACCCATATGGGAGTCCAGGGTACCCATACCAACTCAACGACCCGGCTTACCGCAAAAACGCCACCAGGGACGCCACGGCCACCCTGAAGGCCTGGCTGCAGGAACACAGGAAGAACCCGTACCCGACCAAAGGGGAGAAGATCATGCTGGCCATTATCACCAAGATGACGCTGACGCAGGTCTCCACATGGTTCGCCAACGCCAGGAGGAGGCTCAAGAAGGAGAACAAGATGACCTGGGCGCCCAGGAACAAGAGCGAGGACGAGGACGAGGAGGACGGGGacggagagaggaaagaagtgGAGCGCTCTGAAAAAGCCCTGGATAACAGCGAGGCTTCAGCAGAGGATGAAGGTATCAGCCTGCACGTGGACACTCTGACGGACCACTCGTGCTCGGCAGAGTCCGACGGGGAGAAGGTCAGCTGTCGGGGCGAGCTGGGCTCTGACCCGGCCGGCAACAAATGCGACGAGGACGGCgaggaccagaaccaggacCCGCGGGCTCAGCTCTCGCCCATATCCGTCACATCGTCGCCTCTAACGGGAGTAGAAGCACCACTTCTCagtcaccaccaccaccaccaccacctccatcATCTCCACCAGCTCCACAGCCAGCGCGAGGATTTGGCCCGGAGCCTCATCAACAGCAACACTATTCACACCAATAAGTCGTCTGCATGCCTCGATAGCAGACCTTCTGCGCCTCAGAACCCTACCACAGTCAAGCCCAAATTGTGGTCGCTGGCGGAAATTGCTACCTCGGACCAAAAGCAGCAACATCAGCAACTGGGGCAGCCTGGGCAACCGAACTGCCCCTCCTCCAGCGGTGGCCTCCTTACCCCCCCTACGTCTTCCACCACCTCCCCGGCTGCCAGTTCCCCCTCCCTCTACCCGGCCCCCTCCATCCTTGGAAGACCTATTTATTACACGTCTCCCTTTTATAGCAATTACACAAACTATGGCAACTTCAGCCCCCTGCAGGGCCAAGGGATCCTGCGGTATACTAATTCATCCGGAGTGAGTCTGGttgccgccgccgccgccgccgctgctgccgccgccgccgctgctGCAAACGAGGGTCTGAGCTCCGAGGCGAGCACAAACCCCAAACACAGGCCAGACTCCCCCCTCGTTAAAAATAACCCCAACCACATTGTAGTTgtcgagcagcagcagcagcagcaacatttCAGGTCCGCAAATTTAGAAGCAAAGAAAGGTACGTAATAAACGCGACGCGGTCCGCTGTTGAACGAAACGATAaccattttgaaaaaacaacaacatgtagCCTATTTAATCTGGTGTTGAATCTTGAGattgtatttttcttaaaaCGGGGGGAGGTAAGGCAAGCCGCTTCACGGTGGAGGTAGAGCCTGGAGCGAGTTCACTTGTTTGCAATCCAAATCAACTGGTTTATTTCTTTGCGTCACTCTCATGTGTCATAGCAGTCAACCCATGGCTGTTTCTAGAAAATtaagactttctttttttttcaagcgAGCTTGCATGAGACACAAGTGGCATTATCTGACACAATTTAGCAGATtatcagattattttttttttttttaagatgagtACAATTTTAGGGCTGTATATGAGACTAGGTGACTTATTAAGATGGATATTTACAGCGCCGTCGAAGCAAATTAACGTGTGCTATGGCCTACAGTTCCATTTTAGCGCAGTGCATTTTCTGGAATAATCAATTTATAACTGTTATGTGTATTTTGGTCTGTCATTGAATCATTAGGTATCGCATTAGAATGCAGGAGGGGTGTGATAAGAAAAGCATACTGCAAATAAAAGTGCAAGAGTATACACCTAGCTACATATAGAGACATAAAAATAAGCCCATAATGGACAGGCCCCAAATCAGCCTAaccacgcgcacgcacgcacgcacacacacacacacacacacacacacacacacacacacacacacacacagtggcagcCTGGGAATCCAATAAACGGAGAATTGTTGCCATAGCTTTGAGCAGGAatccttttttttcatgtttcctctgatgtgtgtgtgtgtgtgtgtgcgcgcgcacagtGGGCCCCAGACCTTATCTTTCAGCTAAGGATCATTATAATTTCACAGGGTCAGCCAAAAGCAACCACATCAGTTATTTTGCTCTGTGCATTCACACCGCAACTTTACACCTTCAAATGTCACTTGGGTTAGGTTACTTTCCTTGCGCATATTCAAAGCTTTGCCTACATGCCGCAGGATCTTCTACAgccgttttattttatttatttgttttataacGGCAATTAGGCAGTGGAGGTTTTAATAAGCACTTGCAGTATAGAGCTGTTTGGGTAAAGCGAGCCTGAGAGAACTCGTGGAGGGAGTCGATCATTTGATCGTGTGGGATTTTTATTTCCATGGTCTGCAGGTAGGTGTCACACTTGCTTTGACTATAAAGCGAGTAAGGACACCACCTTTTGGCCTCATGTTTTAACCCATAACCTCTTCTCCAAACCGGATCTAGTGCCACCATATAGTCGGAATTTAAAGCTGCTACCGCTTCCTCAGCTCCACACCGGCGGAGACACTCTACAGCACATGTTTGtcatattattattgtattatctcagtttttgttttttttggatgcATTGTGGATATTAATTTCATATGCTGGTTTGGAAAAGAAAGATCTCCCATTATATGTGATTTACATGTTATTTCTCAGGTTCCTATAGTTTGCTTATTTGCCACGGTATATTATTTTAGTATGTAATCACGTGTGGAAAACATAATTTGGCCTTTTCTGTGAAACTGGATTTCTAAAAGGAGGTGTCTTGGGACGCAAAGCGGACGGGACTGAAGTGAACTTGAGGACCTTCAAAGTGGAATAGCCTAcatttgatatttatttttttaaatgagggcGAAATGATGCCTATAATTTATGCAAGTTGTATTGCAAAAAAATGGGAAACTGACATCGTCTGGTtgttttgtaaatatatatattatggacGGTTTTTATTTGAGACGCATTCGGGACAAAGCTACACAATCTTGTTATCAGGAGTACTTTTACTAATTTATATCTttgaatgtaaataaaataaaacgcgCTGGTATAGATGTACTGGCGGGGTATGGTATCCATTATTCAAAGGAGAAAATATTAAACTGTTTTCCCAACTATTA

Function

symbol description
irx2 Enables DNA-binding transcription repressor activity, RNA polymerase II-specific and sequence-specific DNA binding activity. Involved in negative regulation of transcription by RNA polymerase II. Predicted to be part of chromatin. Predicted to be active in nucleus.

NR:

description
iroquois-class homeodomain protein irx-2-like

GO: NA

KEGG:

id description
K24889 IRX; iroquois-class homeodomain protein IRX

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039806960.1 True 3789 mRNA 0.48 3 15408178 15414047

Neighbor

gene id symbol gene type direction distance location
trnae-cuc_16 NA coding upstream 381525 15026582 ~ 15026653 (+)
dnah5 dnah5 coding upstream 534065 14762370 ~ 14874113 (+)
LOC120562066 NA coding upstream 703354 14703423 ~ 14704824 (+)
LOC120561617 NA coding upstream 788297 14611912 ~ 14619881 (+)
LOC120561930 NA coding upstream 800274 14603952 ~ 14607904 (+)
LOC120562533 lpcat1,LOC103360438,LOC100699650 coding downstream 205469 15619516 ~ 15653052 (+)
slc6a3 slc6a3 coding downstream 243194 15657241 ~ 15675222 (+)
LOC120563110 dcdc2,LOC102296430,LOC102788673 coding downstream 268372 15682419 ~ 15707502 (+)
mboat1 mboat1 coding downstream 1081679 16495726 ~ 16508741 (+)
LOC120562688 tnfrsf11b,LOC103369092 coding downstream 1218829 16632876 ~ 16718524 (+)
LOC120562980 NA non-coding upstream 244932 15100816 ~ 15163246 (+)
G72634 NA non-coding upstream 405044 15000671 ~ 15003134 (+)
LOC120562067 NA non-coding upstream 762390 14644376 ~ 14645788 (+)
G72561 LOC103365327 non-coding upstream 767410 14637870 ~ 14640768 (+)
G72560 NA non-coding upstream 773155 14634177 ~ 14635023 (+)
G72680 NA non-coding downstream 175850 15589897 ~ 15590158 (+)
G72704 NA non-coding downstream 422915 15836962 ~ 15844938 (+)
G72705 NA non-coding downstream 430263 15844310 ~ 15847320 (+)
LOC120562129 NA non-coding downstream 555130 15969177 ~ 16009134 (+)
G72775 NA non-coding downstream 761047 16175094 ~ 16181930 (+)
LOC120561718 LOC107101581 other upstream 775457 14626478 ~ 14632721 (+)
G72506 NA other upstream 981998 14425794 ~ 14426180 (+)
LOC120562174 rbms3,LOC101066789,LOC103370884 other upstream 1038087 14175817 ~ 14370091 (+)
cmc1 cmc1 other upstream 1263882 14133584 ~ 14144296 (+)
LOC120561928 csmd3,LOC101478087,LOC108232275,LOC102799137,LOC102309299,LOC102195523 other upstream 1362042 13754053 ~ 14046136 (+)
irx4a LOC103360443,LOC102233360,LOC103478376,LOC108232226,LOC101474805,LOC102784018,LOC102295185,LOC102202030,LOC104961814,LOC103145173 other downstream 139417 15553464 ~ 15560292 (+)
G72750 LOC104952694,LOC106925895 other downstream 604312 16018359 ~ 16072201 (+)
G73031 LOC103366415 other downstream 2035538 17449585 ~ 17452568 (+)
ubxn11 NA other downstream 2042596 17456643 ~ 17461118 (+)
G73123 phactr4 other downstream 2231466 17645513 ~ 17647186 (+)

Expression


Co-expression Network