LOC120562991 (LOC103388880)


Basic Information

Item Value
gene id LOC120562991
gene name LOC103388880
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 9088184 ~ 9101502 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039806986.1
ATTTGCTATTGACAGTGAATGCAGCGTCAAAAATAACGTCGGATTAGTGCTTTGAACGTGTGACGTCGCAGACGGGCTCTGATGTGTGGACTAGAAATATTTATCTGAGGCATTTGGAGCAACAGACAGACACTATCGGCGTCAGCTTCACTGCAAATTTGTGTTCCTCAGAGTGTGTTCCTTAGCTGTGTGACAGGCTGGTGGTGTACAGCCAGGATGTCCTATATGAGCGCTGACAGCAGCTGGTCCCAGCCAAGGGACTTTGGCAGCCTTATCCAGACATGCAGCTCCAACATCCAGAAGATCAGTCAAAACTCTGGTCAGATCAAAAATCTCCTCCACCAGCTGGGGACGAGACAGAAAACCTCAGAGCTCCAGGAAAGGctCCAACAGCTCCAGCACTACACCAACCAGCTGGCTAAAGAAACCAACAGACACCTGAAGGAGCTGGGGTCACTGCCCCCACCACTGTCTCCATCAGAACAGAGGCAGCAGAAGCTGCAGAAGGAGCGTCTGATGAGCGATTTCTCCGCAGCCCTCAACAACTTCCAGGTGGTGCAGCGGAGGGCAgctgagaaagagaaggagtcGGTGGCCAGAGCTCGAGCTGGCTCCAGAGTCATGGGAGATGGAGGCAATGTGAACGAACAGCTGGTTACATTCGAAAAGGAAGATGAGTGGAACCAGAGCCAGACTCAGACTGAGGAGCCCACCATCACAGAGGAGGACCTGGATATcatcagggagagagagactaacATCAAACAGCTGGAGGCCAACATTATGGATGTGAACCAGATTTTCAAGGACCTGGCTGTGATGATCCACGATCAAGGAGAGATGATTGACACCATTGAGGCCAACGTGGAGAGTGCTGAGGTCCATGTAGACAGAGGGGCCGTCCAGCTGCAGAAGGCAGCCCATTACAAGAGGAAGTCCCGTAAGAGGATGTGCATGCTGGCCATGGTGCTGTCGCTGGTgctcatcatcctcatcatcatcatctggcAAGCCCTCAAATAAGAGAAGCACACTTTCACATGAcatccaatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagaaaatgcTAAATTTGACTTTCCTTACTGTGCTTGACTGAATGTggattgtactgtatttattttgggGTAAATGGCGGGAACATGAATATGTTTTGGGTTTTAAAAGGCTAACAACATAACAGATCTGCCAATATTTTGTGTTGATAATCAAGATTTTTGTTATTTCTTTAGTCTATTGATAAATTGACAAGTATTTGGCGTTTCCGCTCGTAGTTTGGAACATTAAAACTCCACTGAGCCAATGTATGACTACTGCTACCACTACTGCTACTAATAACACTAACTTATGAATTTTTGGAtgatctgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagataaatAAACCCTACATTCCAATGCAGAAAAAGTACAATTTTCTTCAATGTAACCTTTGTCACTTCTTTAGGACTGTCTCATCAAATGCTATCTTGCACAattttatatacagtaagtaACCCTGTCTTGTTTGAATATGAAAGTGTATTCCTGATATAAAAAGTGTCTTACCTATAAGAATGTTAAAAGACAAATATCACCTGTTAGCAGTGATCAGAATGTCTGTCCTTAGTAAACTGTTTGTTTCACTGGCTCTGCCCACCTGAAAGAGAATTTAATACAGTTCCACCTGATCAAGTGC
>XM_039806987.1
CTATTGACAGTGAATGCAGCGTCAAAAATAACGTCGGATTAGTGCTTTGAACGTGTGACGTCGCAGACGGGCTCTGATGTGTGGACTAGAAATATTTATCTGAGGCATTTGGAGCAACAGACAGACACTATCGGCGTCAGCTTCACTGCAAACTGTGTGACAGGCTGGTGGTGTACAGCCAGGATGTCCTATATGAGCGCTGACAGCAGCTGGTCCCAGCCAAGGGACTTTGGCAGCCTTATCCAGACATGCAGCTCCAACATCCAGAAGATCAGTCAAAACTCTGGTCAGATCAAAAATCTCCTCCACCAGCTGGGGACGAGACAGAAAACCTCAGAGCTCCAGGAAAGGctCCAACAGCTCCAGCACTACACCAACCAGCTGGCTAAAGAAACCAACAGACACCTGAAGGAGCTGGGGTCACTGCCCCCACCACTGTCTCCATCAGAACAGAGGCAGCAGAAGCTGCAGAAGGAGCGTCTGATGAGCGATTTCTCCGCAGCCCTCAACAACTTCCAGGTGGTGCAGCGGAGGGCAgctgagaaagagaaggagtcGGTGGCCAGAGCTCGAGCTGGCTCCAGAGTCATGGGAGATGGAGGCAATGTGAACGAACAGCTGGTTACATTCGAAAAGGAAGATGAGTGGAACCAGAGCCAGACTCAGACTGAGGAGCCCACCATCACAGAGGAGGACCTGGATATcatcagggagagagagactaacATCAAACAGCTGGAGGCCAACATTATGGATGTGAACCAGATTTTCAAGGACCTGGCTGTGATGATCCACGATCAAGGAGAGATGATTGACACCATTGAGGCCAACGTGGAGAGTGCTGAGGTCCATGTAGACAGAGGGGCCGTCCAGCTGCAGAAGGCAGCCCATTACAAGAGGAAGTCCCGTAAGAGGATGTGCATGCTGGCCATGGTGCTGTCGCTGGTgctcatcatcctcatcatcatcatctggcAAGCCCTCAAATAAGAGAAGCACACTTTCACATGAcatccaatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagaaaatgcTAAATTTGACTTTCCTTACTGTGCTTGACTGAATGTggattgtactgtatttattttgggGTAAATGGCGGGAACATGAATATGTTTTGGGTTTTAAAAGGCTAACAACATAACAGATCTGCCAATATTTTGTGTTGATAATCAAGATTTTTGTTATTTCTTTAGTCTATTGATAAATTGACAAGTATTTGGCGTTTCCGCTCGTAGTTTGGAACATTAAAACTCCACTGAGCCAATGTATGACTACTGCTACCACTACTGCTACTAATAACACTAACTTATGAATTTTTGGAtgatctgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagataaatAAACCCTACATTCCAATGCAGAAAAAGTACAATTTTCTTCAATGTAACCTTTGTCACTTCTTTAGGACTGTCTCATCAAATGCTATCTTGCACAattttatatacagtaagtaACCCTGTCTTGTTTGAATATGAAAGTGTATTCCTGATATAAAAAGTGTCTTACCTATAAGAATGTTAAAAGACAAATATCACCTGTTAGCAGTGATCAGAATGTCTGTCCTTAGTAAACTGTTTGTTTCACTGGCTCTGCCCACCTGAAAGAGAATTTAATACAGTTCCACCTGATCAAGTGC

Function

NR:

description
PREDICTED: syntaxin-12-like isoform X1

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0016020 membrane cellular_component
GO:0005484 SNAP receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039806986.1 True 1858 mRNA 0.46 10 9088184 9101502
XM_039806987.1 False 1825 mRNA 0.46 10 9088189 9101502

Neighbor

gene id symbol gene type direction distance location
LOC120562241 NA coding upstream 583732 8454764 ~ 8504452 (+)
pomgnt2 pomgnt2 coding upstream 703564 8364356 ~ 8384620 (+)
zgc:114181 LOC104932954,LOC102799802,LOC101469313 coding upstream 889323 8187287 ~ 8198861 (+)
rwdd1 rwdd1 coding upstream 966858 8114521 ~ 8121326 (+)
LOC120561725 fam26e,LOC103478772,LOC106963711 coding upstream 978819 8104864 ~ 8109365 (+)
popdc3 popdc3 coding downstream 14209 9115711 ~ 9123087 (+)
bves bves coding downstream 26348 9127850 ~ 9144754 (+)
hace1 hace1 coding downstream 46113 9147615 ~ 9190089 (+)
ascc3 ascc3 coding downstream 905773 10007275 ~ 10200405 (+)
sim1a sim1,LOC103355653,LOC103388874,LOC102313558 coding downstream 1113991 10215493 ~ 10241076 (+)
G71475 NA non-coding upstream 319120 8768688 ~ 8769064 (+)
G71476 NA non-coding upstream 322050 8765894 ~ 8766134 (+)
G71463 NA non-coding upstream 344394 8743528 ~ 8743790 (+)
LOC120561615 NA non-coding upstream 440475 8646964 ~ 8647709 (+)
G71429 NA non-coding upstream 467845 8594033 ~ 8620339 (+)
G71517 NA non-coding downstream 21661 9123163 ~ 9125732 (+)
G71553 NA non-coding downstream 218950 9320452 ~ 9320696 (+)
G71554 NA non-coding downstream 222315 9323817 ~ 9324017 (+)
G71557 NA non-coding downstream 269502 9371004 ~ 9371948 (+)
G71562 NA non-coding downstream 353873 9455375 ~ 9455641 (+)
trnay-gua_42 NA other upstream 238464 8849632 ~ 8849720 (+)
trnay-gua_41 NA other upstream 238847 8849249 ~ 8849337 (+)
trnay-gua_40 NA other upstream 239613 8848483 ~ 8848571 (+)
trnay-gua_39 NA other upstream 240703 8847392 ~ 8847481 (+)
trnay-gua_38 NA other upstream 241029 8847067 ~ 8847155 (+)
G71610 NA other downstream 1105913 10207415 ~ 10208197 (+)
LOC120561920 LOC106676202,LOC102303534 other downstream 1644506 10746008 ~ 10751849 (+)
LOC120562569 LOC104943359,LOC103359623,LOC101482188,LOC107100615,LOC106961743 other downstream 1684152 10785654 ~ 10961130 (+)
G71743 NA other downstream 1718793 10820295 ~ 10821500 (+)
depdc1b depdc1b,LOC103388656,LOC101486657 other downstream 2365843 11467345 ~ 11482423 (+)

Expression


Co-expression Network