LOC120563011 (syt11,LOC102778393)



Basic Information


Item Value
gene id LOC120563011
gene name syt11,LOC102778393
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 39391948 ~ 39419673 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence


>XM_039807020.1
CATCCTAGCGCGAGGAGCATCAGTCACTGCGCACGGCACCGAGCGAGCAGAGCAGAGAAGCGACACCAGCCAGCGGACATATGAAGGCTTTCCTACCCCGGATCGGCGGCTTGTTTTCGGTCTTTTCCTCTCGTCGTCGTCGCTTCTCTATGGATGTGAAATAAAAAGCGTGCCGGTAGTCAGTCGGTGtcctctttccatctctctccatctttctctctctctctccgctctTCTCCCCGCTCCGTCAGGACCGCATCCTGCCTCAAAAGCCACAAAATGGCGGACATCATCGAGCTGGGACCCGCCTACGCCATGTCTCCGGTCCTGGCGGGCTTCCTGGGAGCCGGTGTTCTGGTCCTGGTCGTGGTGGTTCTGGTGTTGCTCTGGTCCTTCTGTCAGCGCCGCTACCTGCGCAGCGCCGGACGCTACAAGCTGCACGGTGACCGCTACTGCGACGCCGAAGACCCCCCCTACAAGTTCATCCACATGCTGAAGGGAATCAGCATTTACCCAGAATCCCTCAGCGGCAGCAAGAGGATAGTGCGTGGCATCCGGCGCGCCGAGCGCTCCGAACGCCCAGACGGTGACCGAGGCTGCTCGGCCGCGGGAAGAGGCATGGTGCTCGTCGACGCCGAGAACAACATCCTGGACGTCCCGGGACAGCTTCAGATGAGCCACCTGGTCCCGCCTGGTGGGCCCGGCGCCGCCGCGCACGGCCAGGGGGGCCGCGTGGAGCGCGTGCTGCCCGTCCGCGCCGACTACTGCTGCCTGGACAGCAGCTCCGCCAGCAGCAGCCAGACCAGCAGCAAGACGGCCTCCCCGTTCACccCTACGTTCACGCCAGCGACCTccgagcccgagcccgagccgAGCCTGGGCGCCATCAGCCTCACGGTCGACTACAACTTCCCCAAGAAGGCGCTGGTGGTGACCATCGTGGGCGCGCGCGGCCTGCCGGCCGTGGACGAGCAGGCCGGCAGCTCGGACCCCTACGTGAAGATGACCATCCTGCCGGAGAAGAAGCACCGCGTGAAGACCCGCGTGCTGAGGAAGACGCTGGACCCGCTGTTCGACGAGACCTTCACCTTCTACGGCGTGGCGTACAGCGCGCTGCCCGAGCTCACGCTGCACTTCCTGGTGCTCAGCTTCGACCGCTTCGCCCGCGACGACGTCATCGGCGAGGCCGTGGTGCCGCTGAAGGGCGTGGACCCCAGCACGGGCCGGGTCCACCTGAGCCAGCAGATCACCAAGAGGAACATGCAGtgtgAGAGCCGTGGGGAGCTGCTGGCGTCTCTGTCCTACCAGCCCGTGTCTCACCGTCTCAGCGTGGTCGTCCTGAAGGCTCGACACCTCCCCAAGATGGACATCACCGGCCTGTCAGCAAATCCGTACGTGAAGGTGAACGTCTTCTACGGACGTAAACGGATCGCCAAGAAGAAGACGCACGTGAAGAAGTGCACGCTGAACCCGGTCTTCAACGAGTCCTTCATCTACGACATCCCGCCCGAGCTGCTGCCCGAGATCTCCGTGGAGTTCCTGGTGGTCGACTTCGACCGGACCACCAAGAACGAGGTGCTGGGCCGCCTGCTGCTCGGCCTGCACAGCCCCGCCCCCTCTGGCGCCTCCCACTGGCGGGAGGTCTGCGAAAACCCGCGCCGGCAGATCTCCAAATGGCACAACCTGAGCGAGTACTGAGGGCGGAACCGCCAGAAAACCAGCCGACACGCAACACCGCCACGCGGCTGGGACTCTACCAGCCAACACCGCTgggaaacaaagacacacacacacacacacacacacagacaaacatacacacacatacacacacacacacacattgttgtgATCAAAGTTCAAGGGTAACTTCGGTATTTTGCCTGGACTCTatgttcccatgtttttgtgactgatgtgaacaaaaaactctgaaactggtccagaattatcagttagagtccactaaaagttttgttgttgccgctga

Function


symbol description
syt11 Enables ubiquitin protein ligase binding activity. Involved in autophagy. Located in neuron projection.

NR:

description
PREDICTED: synaptotagmin-11

GO:

id name namespace
GO:0006810 transport biological_process
GO:0008021 synaptic vesicle cellular_component
GO:0016020 membrane cellular_component
GO:0005215 transporter activity molecular_function

KEGG:

id description
K19911 SYT11; synaptotagmin-11

RNA


RNA id representative length rna type GC content exon number start site end site
XM_039807020.1 True 1990 mRNA 0.62 5 39391948 39419673

Neighbor


gene id symbol gene type direction distance location
LOC120562489 NA coding upstream 113445 39265833 ~ 39278503 (+)
LOC120563022 NA coding upstream 361114 39020810 ~ 39030834 (+)
LOC120563021 NA coding upstream 382372 38995153 ~ 39009576 (+)
plin6 NA coding upstream 488688 38884290 ~ 38903260 (+)
LOC120563014 NA coding upstream 799453 38581518 ~ 38592495 (+)
LOC120563008 NA coding downstream 5655 39425328 ~ 39427120 (+)
LOC120562494 LOC108250191,LOC103388058,LOC101480860,LOC107095276 coding downstream 361563 39781236 ~ 39803887 (+)
LOC120562359 NA coding downstream 392182 39811855 ~ 39828704 (+)
LOC120562496 LOC103369586 coding downstream 504652 39924325 ~ 39979365 (+)
LOC120562361 LOC103369586 coding downstream 663357 40083030 ~ 40093260 (+)
LOC120563028 NA non-coding upstream 3741 39385546 ~ 39388207 (+)
G79710 NA non-coding upstream 10281 39380288 ~ 39381667 (+)
LOC120563033 NA non-coding upstream 31262 39359474 ~ 39360686 (+)
LOC120563032 NA non-coding upstream 55997 39335351 ~ 39335951 (+)
G79689 NA non-coding upstream 84209 39230944 ~ 39307739 (+)
G79717 NA non-coding downstream 12640 39432313 ~ 39433121 (+)
LOC120563031 LOC107095265,LOC103369586 non-coding downstream 56102 39475775 ~ 39479389 (+)
LOC120563029 NA non-coding downstream 65278 39484951 ~ 39485980 (+)
LOC120563030 NA non-coding downstream 79673 39499346 ~ 39501137 (+)
G79903 NA non-coding downstream 139435 39559108 ~ 39575672 (+)
LOC120563015 NA other upstream 45516 39312639 ~ 39346432 (+)
LOC120563019 NA other upstream 60432 39321432 ~ 39331516 (+)
dcst2 NA other upstream 85861 39302039 ~ 39306087 (+)
LOC120562999 NA other upstream 293035 38594045 ~ 39098913 (+)
cpne4a cpne4,LOC107379031,LOC103372348,LOC102220834,LOC108412597 other upstream 611588 38676736 ~ 38780360 (+)
G79713 NA other downstream 13788 39433461 ~ 39454292 (+)
G79722 LOC100712425 other downstream 40775 39460448 ~ 39463841 (+)
LOC120562364 LOC108234077 other downstream 345500 39765173 ~ 39771420 (+)
LOC120562498 LOC103369894 other downstream 871309 40290982 ~ 40345060 (+)
G80003 NA other downstream 897066 40316739 ~ 40321067 (+)

Expression



Co-expression Network