rbfox1l (LOC104929735,LOC100696733,LOC102314559)


Basic Information

Item Value
gene id rbfox1l
gene name LOC104929735,LOC100696733,LOC102314559
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 22968438 ~ 22982779 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039807055.1
tcaggCTGCATGATCAACTGATGGACACACAGAGGCTCACTTGCTTTCTCTTTCACTGATCTATATTGTGTCTTTTACGGACAGGACATTGGTTGTTTTGTGGACTTTCTTTGCGTTTTCTTCTTTGCGTTTTCTTCTTTGACTTATCTGCAAGGTTAAATTGAGTCTTAACCTTCTTTCCCCTCACCCTCTTGGATCTTCTGTTTTCTCCTGTtgggatttttttcccccagcctAATTGCTTGCTCTTCTGTGTGCATATCAACCCTTCCTTTTCCCCGGCTCTCTTTCTCCTTGTCCTCCCATCTTCCACCGTTCCCTGTCTCCTTGTGCGTGGTGTTTGGGCCATGCTCTCCTCACCCACTGTGATTCTCCAGCCTTATGGACTCCCTGTCTACCCACAGACAACCACATGCTACCCCAGCATAGTTCAGGGAGGCGCCTCTCAGGAGGCCGGCCCCGGCAGCGGCGACCCCACCCTGCCTCAGGTCTAcgcccctcctccctcctatcCCCCGCCTGGTCAAGGTCCGCCAACATCTGTAGGCAGACTGCCACCTCTTGATTTTACCAGTGCACACCCCAGCTCAGAGTACCCCGAACATCCCCAACTCAGAGTCTATCAGGGTCCTCAGCTCGACGGGGCAGAGGCTCTGACATCCAGTAACACGGAGGATGGCTTGGCCcctgtgacctctgacccccaGTCTCTGAGCATGTCCGTGTCATCAGCGGGCGGAGCAGGAAGTGGAAGCGATGAGGAGGGGTCAGGTAAGGCTCAACCGAAACGCCTTCACGTCTCCAACATCCCTTTCCGCTTCAGAGACCCGGACCTTCGCCAGATGTTTGGGCAATTTGGGAAGATCCTTGATGTAGAAATTATCTTCAATGAGAGGGGGTCCAAGGGCTTTGGGTTCGTCACCTTCGAGAGTGCGGGCGAGGCTGACCGAGcaagagaaaagctgaatggGACGATTGTGGAAGGGAGAAAGATTGAGGTTAATAACGCCACTGCAAGAGTAGTTACCAAGAAGCCACAGACGCCTCTAGTGAATAGTGAAATCTCAACTTCTGGATGGAAGATCAACCCCGTCATGGGGGCGATGTACGCACCTGAACTCTATACAGtTGCCAGTTTCCCATATCCCGTAGCAACTCCCACATTGGCCTACCGGGGCTCTGCGCTGCGAGGTCGAGGCCGAGCCGTCTACAACACAATTCGCTCTGCTGCAGCCACGCCTACTGCTGTACCCACCTACCCTGGGGTGGTATATCAGGATGGACTGTATGGAGCAGAAGTCTATGGTGGCTATCCTGCAGCTTACAGAGTGGCTCAATCAGTATCTGCTGCCACAGCAACCTACAGTGATGGATACGGACGCATTTACACCACAGCTGCGGATCCCTATCACCACTCAGTTGGACCAACAACGACATATGGAGTTGGTACAATGGCCAGTTTGTACAGAGGAGGATATAACCGCTTCACCCCGTACTGAGCCACCCACTGGTGGGAAGACATCTCTTTTGAACTCTGGGATTGGCTGATCCACGGACACTGCACAATAGATTGTGAGATCCTTGGAAATGTGGaatgttttacttcctgcctccATCACAACCTCTCCTCGAGAGACTAAACAGACTGAAGTTGTAAATAGTGTAGGACCCATTTACTGTCCATTCTACTGACGAATAGCACCTGGAAGAGGATGTTATGTAATATATAGACTTAAAACCTTTAAAGGATTATTGCTTTCTGAATTTAAAGAGTAGTGATCTTGGCTAACACTACAGAAGTGGGTGAAAAATACTGTGAGAATGAATTTTGTGAATAATATCTGCAAGATTCACGGGTCAAACTGTACAAAACAAAGTTTGTTTAATGACTTATTTTTAATGACTAATTATTTACTAAATctctgtttgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgtgggtgtgtgtgagtgtgtgtgagtatatgAGTGAGGTTATGCATCAACACTGTTTAGTTACCCAGTCGACCGAGACAGCTGTGACACTGGTATCATTATTACAAACAACGGAATTAATGTTGGTCTGGATGTAGTTggaattttatttgtttttgtgcctTTCTAACAATCTACCTCTCATACATTTTTAGCTTTTAATACAGCTGTCATAATTAATCCTGTatcattttctgtgtttgtgatcTTTGATTctgcagaatttttttttcttttcacttttctgtccataAATGCTCATttaacatattttctgtttctgGGGCTCTGTACCTCACAACCCAATGAGCCTTTAACTATTGAGGGTTATTTTTCTGAGATTTTTCTGAGATGCTTAAACCCTGTTTTACTTTCACACAGTTATACACATGCACAACTAGGAATTGCAGTAAGAAGCGGTCTTTTGCTGTTGGCTTTGCTGCACAACCTGAGGTTGAAAGGCAGTAGAATATAAATGTTTCAGGCTGCGTCTCTCATCTTTATGCTGCAGATATAACTGCTCACTGTGTAAGAGTTCACATATCCTATTCTGTTCTATTCAAACTCGTCTAATGTTGCCTTATTCCACTCTTTACTGTCATCCTTTCCtgtattttctctctccttcctcactGTTGAATGACTTCTCGACTTGTATTGATCATTTCTTCTCAGCCTACTCTTTGTTTCGTTGCACTCTTTCCTGCTGTGTTTGATGTTTACCTCTAAATAAAACTggtttctctcttttcctcttctgtCCTTTATTGATTCATAACATTTTCCAAGGTTTTGTTTTAACTTACtgtgtctttgtttttatttatttctatgcTGCTTTGATGCCAAAGAAGACTTGTAATTGATTTGAATTTAATGTAAAAGTAACTTGACTGACTTCATCCCATCACATCACATGTGCCTGGATCATTTCCATCAGGACTTATACAGAAACCCAAGCAGCCTCTTTCCTTCTATTTCTTGCTTGTATTTAACTTGTTTCGCTCTTGTACTCCTTTTCTAATTTCAGTGCTTACTACCTACTTTCTGATCTAATTTTTTTTAGGtttcattaaaggtgcagttGTACCAGTATAACACTTGATATAGAATTGAATCTTTCTTTTTAACTTCCGTCTTTTCTCCGTGGGTGATTGTTACCTTTGCTTCTGACTTTCTGTCTTTTTGCATGATGCATAATTCTTCtcttctcattttctctctcctgCTCCTGTATACTGTGTAGATCTAGCTTTCTTGTCATTAATTTGGCTGTTTGTTCCTTGCCTGTTAGTGCTTAGTTCTCTGTTCATTCTGAACTAGTTTTGCAGCTCTACTTTTGCTAATTTCTCTTTCATCAGTAGCTCTAGTTCTGTTGTTCTTTATGGTTTATTTTTCATCTTGCGTTGAAACGATTACTCTAACTGGACAGCTATGTCTATTAGGCAATGCCCAGACTATTTTTTAGTAAATTTGCAAACTGTGCACGTGAGATTAATTATACAGCTGTAAACTCTCTAAATATATAGCTTTTTAACGCACATTTAATAATACAATTGttaacaaacacacatgtactGGTCTTTTGCAGAACTTTTGACCAAAGTCTTATTAGATTTAATGTGAAAATaccttttataacttttattacTGTATATGGGGCTTAATGAAGACAATCTAGAGGTACATCAAGTAAAAACACTTCATTGTATTTTGAGGCATGTAAAACCAGACTTTCATTAGAGATTTATGCAGGAATGTAGTTCTTTCCTTTGACTTTCTGTATACACCTTTCAACCTTCAAACAATATTTCCTGCTGTTCTTCTTTCCtgtttaattttcattttattaaactTAATTGCATGAGCTCAATCTTTTGCtgttctttcctcttttttttttaaaccaatcacatgtaattttatatataaatttcTTTGACTACTGCTGtattttctatcattttacCTGTAACATGTTTTTCAACCTATCATGAAACaaactcttttcttttccaaCTACTCCATTCCCTTTGACGTCATCTTATACCTCAAATGTGTTGGCCGATATAAACACGTCAAACATAGCTGTATAAGGGAAAACATGGAAGTGAATACCTTCATTGTATCAAGTAACCACTCAAGTCTCTCACTCGACATTTATCCCTCAATAAACTGTTCATACAAAA
>XM_039807056.1
ATGTGATTGGTGGATGAGTGGAACTTATGGTGTGGAAGGCGGGTGGCCAGCTGGCATTAAAACATGCAGCAGTTGTTAGACAATGCATCAGAAATCGAGGAATGCAGTAAAGGGGGAGGCGCCTCTCAGGAGGCCGGCCCCGGCAGCGGCGACCCCACCCTGCCTCAGGTCTAcgcccctcctccctcctatcCCCCGCCTGGTCAAGGTCCGCCAACATCTGTAGGCAGACTGCCACCTCTTGATTTTACCAGTGCACACCCCAGCTCAGAGTACCCCGAACATCCCCAACTCAGAGTCTATCAGGGTCCTCAGCTCGACGGGGCAGAGGCTCTGACATCCAGTAACACGGAGGATGGCTTGGCCcctgtgacctctgacccccaGTCTCTGAGCATGTCCGTGTCATCAGCGGGCGGAGCAGGAAGTGGAAGCGATGAGGAGGGGTCAGGTAAGGCTCAACCGAAACGCCTTCACGTCTCCAACATCCCTTTCCGCTTCAGAGACCCGGACCTTCGCCAGATGTTTGGGCAATTTGGGAAGATCCTTGATGTAGAAATTATCTTCAATGAGAGGGGGTCCAAGGGCTTTGGGTTCGTCACCTTCGAGAGTGCGGGCGAGGCTGACCGAGcaagagaaaagctgaatggGACGATTGTGGAAGGGAGAAAGATTGAGGTTAATAACGCCACTGCAAGAGTAGTTACCAAGAAGCCACAGACGCCTCTAGTGAATAGTGAAATCTCAACTTCTGGATGGAAGATCAACCCCGTCATGGGGGCGATGTACGCACCTGAACTCTATACAGtTGCCAGTTTCCCATATCCCGTAGCAACTCCCACATTGGCCTACCGGGGCTCTGCGCTGCGAGGTCGAGGCCGAGCCGTCTACAACACAATTCGCTCTGCTGCAGCCACGCCTACTGCTGTACCCACCTACCCTGGGGTGGTATATCAGGATGGACTGTATGGAGCAGAAGTCTATGGTGGCTATCCTGCAGCTTACAGAGTGGCTCAATCAGTATCTGCTGCCACAGCAACCTACAGTGATGGATACGGACGCATTTACACCACAGCTGCGGATCCCTATCACCACTCAGTTGGACCAACAACGACATATGGAGTTGGTACAATGGCCAGTTTGTACAGAGGAGGATATAACCGCTTCACCCCGTACTGAGCCACCCACTGGTGGGAAGACATCTCTTTTGAACTCTGGGATTGGCTGATCCACGGACACTGCACAATAGATTGTGAGATCCTTGGAAATGTGGaatgttttacttcctgcctccATCACAACCTCTCCTCGAGAGACTAAACAGACTGAAGTTGTAAATAGTGTAGGACCCATTTACTGTCCATTCTACTGACGAATAGCACCTGGAAGAGGATGTTATGTAATATATAGACTTAAAACCTTTAAAGGATTATTGCTTTCTGAATTTAAAGAGTAGTGATCTTGGCTAACACTACAGAAGTGGGTGAAAAATACTGTGAGAATGAATTTTGTGAATAATATCTGCAAGATTCACGGGTCAAACTGTACAAAACAAAGTTTGTTTAATGACTTATTTTTAATGACTAATTATTTACTAAATctctgtttgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgtgggtgtgtgtgagtgtgtgtgagtatatgAGTGAGGTTATGCATCAACACTGTTTAGTTACCCAGTCGACCGAGACAGCTGTGACACTGGTATCATTATTACAAACAACGGAATTAATGTTGGTCTGGATGTAGTTggaattttatttgtttttgtgcctTTCTAACAATCTACCTCTCATACATTTTTAGCTTTTAATACAGCTGTCATAATTAATCCTGTatcattttctgtgtttgtgatcTTTGATTctgcagaatttttttttcttttcacttttctgtccataAATGCTCATttaacatattttctgtttctgGGGCTCTGTACCTCACAACCCAATGAGCCTTTAACTATTGAGGGTTATTTTTCTGAGATTTTTCTGAGATGCTTAAACCCTGTTTTACTTTCACACAGTTATACACATGCACAACTAGGAATTGCAGTAAGAAGCGGTCTTTTGCTGTTGGCTTTGCTGCACAACCTGAGGTTGAAAGGCAGTAGAATATAAATGTTTCAGGCTGCGTCTCTCATCTTTATGCTGCAGATATAACTGCTCACTGTGTAAGAGTTCACATATCCTATTCTGTTCTATTCAAACTCGTCTAATGTTGCCTTATTCCACTCTTTACTGTCATCCTTTCCtgtattttctctctccttcctcactGTTGAATGACTTCTCGACTTGTATTGATCATTTCTTCTCAGCCTACTCTTTGTTTCGTTGCACTCTTTCCTGCTGTGTTTGATGTTTACCTCTAAATAAAACTggtttctctcttttcctcttctgtCCTTTATTGATTCATAACATTTTCCAAGGTTTTGTTTTAACTTACtgtgtctttgtttttatttatttctatgcTGCTTTGATGCCAAAGAAGACTTGTAATTGATTTGAATTTAATGTAAAAGTAACTTGACTGACTTCATCCCATCACATCACATGTGCCTGGATCATTTCCATCAGGACTTATACAGAAACCCAAGCAGCCTCTTTCCTTCTATTTCTTGCTTGTATTTAACTTGTTTCGCTCTTGTACTCCTTTTCTAATTTCAGTGCTTACTACCTACTTTCTGATCTAATTTTTTTTAGGtttcattaaaggtgcagttGTACCAGTATAACACTTGATATAGAATTGAATCTTTCTTTTTAACTTCCGTCTTTTCTCCGTGGGTGATTGTTACCTTTGCTTCTGACTTTCTGTCTTTTTGCATGATGCATAATTCTTCtcttctcattttctctctcctgCTCCTGTATACTGTGTAGATCTAGCTTTCTTGTCATTAATTTGGCTGTTTGTTCCTTGCCTGTTAGTGCTTAGTTCTCTGTTCATTCTGAACTAGTTTTGCAGCTCTACTTTTGCTAATTTCTCTTTCATCAGTAGCTCTAGTTCTGTTGTTCTTTATGGTTTATTTTTCATCTTGCGTTGAAACGATTACTCTAACTGGACAGCTATGTCTATTAGGCAATGCCCAGACTATTTTTTAGTAAATTTGCAAACTGTGCACGTGAGATTAATTATACAGCTGTAAACTCTCTAAATATATAGCTTTTTAACGCACATTTAATAATACAATTGttaacaaacacacatgtactGGTCTTTTGCAGAACTTTTGACCAAAGTCTTATTAGATTTAATGTGAAAATaccttttataacttttattacTGTATATGGGGCTTAATGAAGACAATCTAGAGGTACATCAAGTAAAAACACTTCATTGTATTTTGAGGCATGTAAAACCAGACTTTCATTAGAGATTTATGCAGGAATGTAGTTCTTTCCTTTGACTTTCTGTATACACCTTTCAACCTTCAAACAATATTTCCTGCTGTTCTTCTTTCCtgtttaattttcattttattaaactTAATTGCATGAGCTCAATCTTTTGCtgttctttcctcttttttttttaaaccaatcacatgtaattttatatataaatttcTTTGACTACTGCTGtattttctatcattttacCTGTAACATGTTTTTCAACCTATCATGAAACaaactcttttcttttccaaCTACTCCATTCCCTTTGACGTCATCTTATACCTCAAATGTGTTGGCCGATATAAACACGTCAAACATAGCTGTATAAGGGAAAACATGGAAGTGAATACCTTCATTGTATCAAGTAACCACTCAAGTCTCTCACTCGACATTTATCCCTCAATAAACTGTTCATACAAAA

Function

NR:

description
PREDICTED: RNA binding protein fox-1 homolog 1-like

GO:

id name namespace
GO:0048739 cardiac muscle fiber development biological_process
GO:0048741 skeletal muscle fiber development biological_process
GO:0006397 mRNA processing biological_process
GO:0043484 regulation of RNA splicing biological_process
GO:0005634 nucleus cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K14946 RBFOX, FOX; RNA binding protein fox-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039807055.1 True 4243 mRNA 0.42 12 22968438 22982779
XM_039807056.1 False 3923 mRNA 0.41 12 22972645 22982779

Neighbor

gene id symbol gene type direction distance location
tfpt tfpt,LOC102781997 coding upstream 69569 22893099 ~ 22898869 (+)
zgc:158689 LOC104960461,LOC101078804 coding upstream 80560 22878031 ~ 22887878 (+)
cyth2 cyth2,LOC103136639,LOC106520542,LOC107088802 coding upstream 103595 22852358 ~ 22864843 (+)
sphk2 LOC104960464,LOC103388269,LOC106096428 coding upstream 118911 22838405 ~ 22849527 (+)
rpl18 rpl18 coding upstream 130639 22832356 ~ 22837799 (+)
cdc42ep5 cdc42ep5 coding downstream 21593 23004372 ~ 23007320 (+)
leng9 NA coding downstream 45939 23028718 ~ 23036069 (+)
ttyh1 ttyh1,LOC102785918 coding downstream 54120 23036899 ~ 23058964 (+)
ube2s ube2s coding downstream 81023 23063802 ~ 23070370 (+)
si:dkeyp-69b9.6 znf628,LOC100697888,LOC102784474,LOC103360149 coding downstream 104396 23087175 ~ 23096445 (+)
G75045 NA non-coding upstream 43283 22924592 ~ 22925155 (+)
G75042 NA non-coding upstream 48335 22918752 ~ 22920103 (+)
G74769 NA non-coding upstream 712960 22255271 ~ 22255478 (+)
G74765 NA non-coding upstream 722675 22245489 ~ 22245763 (+)
G74764 NA non-coding upstream 725405 22242817 ~ 22243033 (+)
G75065 NA non-coding downstream 113 22982892 ~ 22987322 (+)
G75069 NA non-coding downstream 11641 22994420 ~ 22994706 (+)
G75077 LOC104960445 non-coding downstream 34028 23016807 ~ 23018595 (+)
G75155 NA non-coding downstream 161163 23143942 ~ 23144165 (+)
G75192 NA non-coding downstream 345463 23328242 ~ 23328629 (+)
cnot3a cnot3 other upstream 56918 22900089 ~ 22911520 (+)
myh14 NA other upstream 148385 22785578 ~ 22820053 (+)
LOC120562539 LOC102295960,LOC100711672,LOC102209551,LOC101487210,LOC102786116 other upstream 263022 22689070 ~ 22705416 (+)
LOC120562537 NA other upstream 300553 22660479 ~ 22667885 (+)
arnt NA other upstream 342485 22610018 ~ 22625953 (+)
LOC120562293 LOC103360151,LOC102310947,LOC102785150 other downstream 87808 23070587 ~ 23083147 (+)
LOC120562612 LOC103367657,LOC105025867,LOC103136704 other downstream 508346 23491125 ~ 23494034 (+)
trpv6 LOC104929027,LOC104960406,LOC103388006,LOC107082237 other downstream 578069 23560848 ~ 23571243 (+)
casp2 casp2,LOC102795506,LOC103369458 other downstream 658776 23641555 ~ 23651496 (+)
LOC120563204 NA other downstream 785454 23768233 ~ 23813408 (+)

Expression


Co-expression Network