pdp1 (pdp1)


Basic Information

Item Value
gene id pdp1
gene name pdp1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 21183951 ~ 21190820 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039807088.1
tcagccaatcagcgtttACTTTGCAGTGAGGCGCTCCAGAATGATACAGACCGGAGGGGTCGGCGTCAAGTCATGAACTTCAGTAACTTCTACAGACCCATCGGTTAAGTGCACCTTCAGCCATGCCTGTGAGATCTCAGCTGCTCAGGGGTTTGCCTCATGCCAAGGTCTTGGCCTCCAGTCTGTTACCATGCCAACAACACCAGTCCCAGTTAGTACCCATTACTCACAGACCTGCCTCAAGACGGTCCTCTCATATGTGGCAGAGCCACCAGCACTCAAGAAGTTACCAGACAACCTCAGTGCTCCGCAGCTACATCCTATCACCCCCGCAGGTCAACTCTATTCTGAAAGCCAACGAGTACAGCTTCAAGGTGCCAGAGTTTGATGGAAAGAATGTGTCATCAGTGATGGGTTTCGAGAGTAATCAGCTGCCGGCTAACGCTCCTATAGAAGACCGTCGAAGTGCAGCCACATGCCTGCAGACGCGAGGAATGCTGCTGGGTGTGTTTGATGGCCATGCTGGCTGTGCCTGTGCACAGGCGCTGAGTGAACGGTTGTTTTACTACATAGCTGTGTCTCTGCTGCCCCACAACACACTGTGTGAGCTCGAGGCAGCTGTGGAGGCCGGCAGGGCCCTCAGTCCCATCCTGCAGTGGCACAAACACCCCAACGACTACTTCAGCAAGGAGGCTCAGACTCTTTACTTCAACAGCCTCCGAACCTACTGGCAGGAGTTAATAGATCTCACCAGcCCAGGCGAAGTTCCAGACACCCGTGAGGCCTTGTTGAATGCTTTCAAGAGGCTGGACAATGACATTTCCCTGGAGGCTCAGGTGGGGGACCCGAATGCTTTCTTGCACTACTGGGTCCTGAGAGTGGCCTTTTCTGGAGCAACGGCCTGCGTGGCTCACATCGATGGATCAGAACTATTTATAGCCAATTCAGGAGACGCTCGGGCAGTGTTGGGGGTGCAGGAGGCAGATGGTTCATTCAGCGCTCACACGCTCTCGAATGACCACAGCGCCCAGAATGAGGCGGAGGTGGCTCGGATACGAAGTGAACACCCTCCATCAGAGAGGAAGACAGTTATACGACAGGACCGGTTGCTTGGCCTCCTCATGCCGTTACGTGCGTTTGGGGATGTAAAGTTCAAATGGAGTATTGATCTGCAGAAGTGTGTGTTAGAGTCTGGACCTGATCAGCTCCATGAAAACGAGCACACCAAGTTTATCCCTCCAAACTACCACACACCCCCCTACCTGACCGCCGAGCCTGAGATCACGTACCACAAACTGCGGCCACAGGATCGTTTCATGGTGATTGGCTCTGACGGCCTCTGGGAGACGCTGCACAGACAGGAAGTGGTTCGTATTGTGGGGGAGTATTTAACAGGGGTGCACCAGCGCCAGCCCCTCAAAGTCGGAGGCTACAGGGTCACCCTGGGACAGATGCAGGAGCTGCTTGATGAGAGAAAGGCTCGCATGTCTTCGGCTTTCGAGGATCAGAACTCTGCGACCCACCTGATACGTCACGCGGTGGGAAACAACGAGTTTGGCACGGTTGACCACGAGAGGCTGTCAAAAATGCTGTCGCTGCCTGAAGAGCTGGCTCGCATGTACCGCGAtgacatcaccatcatcatcgcTCAGTTCAACCCTCACGTGATTGGAGCACAGAGACAGGACGGGCAATCCTGAGCTGTACAAAAGCCATTCACTGGTGTTTTACTGAGGAGTACACACACTTGTGTAACGTCTACACAAAAGCACACTCTGTGGACAAACAGGCCATATTAAGAAAATATCTGTTTGAAAGAGttgttttaacattatttatgtaaagaatttgtatgtttgtatgccATACTAGAGAGGATCCTGTTCCCCGTGAAGTTCAGATCTTTGTTGGATCGAAGCCTCTTATATAAAATCCTATTTATGCTACAAATATCCTCTGGCAACGGTTTGACATTCCCGGCGTGGTTGATAAGATGCTGTTACAAACTGATTATTGTGCCAAAAGATTCAACCTCCTCGTCTGCTGAAAGACTGAATCACTGAAATGATAGAGATTCCAAAGAGGGTGAAGGTAAAGATGCTACTGTCGATGCAGCACTGACTGGACCTGCATCTCTGAAATGGACTCTAACTGGGCTGTGTCATTCTAACACCAATGATAACCACAAATCAAACAAGTTGAATAATAAAATAGACATTTCTTCATTCATAagggtcacaagccaaaaagggggggggggcgggggatgttttcatttcaaatctAATATGCTGAAGCAAAGAGCAAAACTAAATTGTACAAATATTTACAGACTGCACAGTctaacaggttatgtactgaAAGGAAGACATGCACTGCGCACCACTACAGGTAGACTTAGAAGTAATAATTAAGTGAATTACTCTCCGTTTATACAATACAGCACCACAAGTCAGCCTGTATGTAAGCAGACTGAGTAAAATGAAGGTGTATAGTTTTTTTCCCAAGCTTTGTGGGGTTCAAAGGGACGCTTGTTAAAAGTTCGTCTcgcctaatgtttttttttttcttctttctgaaaAGGTCATTAGCAGTGTGGGTAACATGTTACAGTTTGGGTTTTTATTATTACTCATGACAGCAATGGTGAAAGCAGAAGCATTCTGCTAATACTCTCCAGTTAAACACTAATGAGGGGTCGTAGCTGTGTGTTCAAGTGTAATAGGCCCAAATGAATGAGCAGAATGTAAATTTGAAAGAAGCTGAATATTAAACGTTATTCTTTCAGCTTTTGCAGAATTGTAAATTGTAACTTATGTAGGTTACGTTTTGTATATGgaatggtttaataaaacactGAATACACATCacttggtggt

Function

symbol description
pdp1 Predicted to enable [pyruvate dehydrogenase (lipoamide)] phosphatase activity. Predicted to be involved in positive regulation of pyruvate dehydrogenase activity and protein dephosphorylation. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in obesity and pyruvate decarboxylase deficiency. Orthologous to human PDP1 (pyruvate dehydrogenase phosphatase catalytic subunit 1).

NR:

description
PREDICTED: pyruvate dehyrogenase phosphatase catalytic subunit 1

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0046872 metal ion binding molecular_function
GO:0004722 protein serine/threonine phosphatase activity molecular_function

KEGG:

id description
K01102 PDP; pyruvate dehydrogenase phosphatase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039807088.1 True 2879 mRNA 0.48 9 21183951 21190820

Neighbor

gene id symbol gene type direction distance location
tmem67 tmem67 coding upstream 603 21172523 ~ 21183348 (+)
si:ch211-197h24.6 NA coding upstream 16265 21161670 ~ 21167686 (+)
invs LOC102794544 coding upstream 32438 21129350 ~ 21151513 (+)
stx17 stx17,LOC102795111 coding upstream 66858 21106838 ~ 21117093 (+)
nr4a3 nr4a3 coding upstream 80350 21080886 ~ 21103601 (+)
rnf41l LOC102792600,LOC102077802,LOC102303797,LOC101478352,LOC102199951,LOC103373185 coding downstream 44367 21235187 ~ 21240428 (+)
esrp1 esrp1 coding downstream 65905 21256725 ~ 21268854 (+)
sgk2b NA coding downstream 118058 21308878 ~ 21312066 (+)
l3mbtl1b l3mbtl3 coding downstream 124249 21315069 ~ 21329447 (+)
fam171a1 fam171a1 coding downstream 170774 21361594 ~ 21387306 (+)
G74234 NA non-coding upstream 27039 21101170 ~ 21156912 (+)
G74233 NA non-coding upstream 31439 21150389 ~ 21152512 (+)
G74207 NA non-coding upstream 290009 20893139 ~ 20893942 (+)
G74208 NA non-coding upstream 291296 20891684 ~ 20892655 (+)
G74205 NA non-coding upstream 342182 20840560 ~ 20841769 (+)
G74274 kiaa1429,LOC104941925 non-coding downstream 52409 21243229 ~ 21243567 (+)
G74286 NA non-coding downstream 98351 21289171 ~ 21289375 (+)
G74287 NA non-coding downstream 98733 21289553 ~ 21290314 (+)
G74288 NA non-coding downstream 100222 21291042 ~ 21292380 (+)
LOC120562851 NA non-coding downstream 534128 21724948 ~ 21725705 (+)
sec61b sec61b,LOC102796100 other upstream 172537 21008013 ~ 21011414 (+)
glipr2l glipr2 other upstream 578786 20600323 ~ 20605165 (+)
gra NA other upstream 857990 20322330 ~ 20325961 (+)
si:ch211-257p13.3 kifc3,LOC102783047 other upstream 956960 20214588 ~ 20226991 (+)
LOC120561838 tppp other upstream 974624 20192690 ~ 20209327 (+)
LOC120563169 NA other downstream 140592 21331412 ~ 21336665 (+)
crot acbd7,crot,LOC102783617,LOC101470173 other downstream 212215 21403035 ~ 21415894 (+)
them4 LOC106592246,LOC104959154,LOC101466288,LOC107096308,LOC100702377,LOC105029233,LOC106575342 other downstream 408214 21599034 ~ 21603458 (+)
G74633 tuft1,LOC102781808 other downstream 578728 21769548 ~ 21770286 (+)
slc50a1 slc50a1 other downstream 892849 22083669 ~ 22091963 (+)

Expression


Co-expression Network