tmod4 (tmod4,LOC102789303)


Basic Information

Item Value
gene id tmod4
gene name tmod4,LOC102789303
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 32915320 ~ 32946228 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039807109.1
AGTAAAAGAGAGACAgcgaaagacagaaagaaagaggaggggggagaagagaaaaaaagagaaacgaCTTTCTCTGGTTTCTAACTTCAGGCTCTGCCTTGCCGAGGGGCTTCAGCACTGCTCGTCTGTGAAGTGCCCTTTCCAGCGCCGAGGGGTGTGCAGTGGTGTGTatgcctgagtgtgtgtgtgtgtgagccagaACCTCAGGAGCCATGTCGGACCCCAGGGACATCGACGAGGATGCCATCCTCAAGGGCCTCAGTGCCGAGGAGCTGGATCGGCTGGAGGAGGAGCTGATGGAGATGGACCCCGAGAATGCCATGCTGCCCGCTGGCTTCCGGCAGCGTGACCAGACGAAGAAGAGCCCGACGGGGACGTTCGACCGTGAAGCCCTGCAGCAGCACCTGGAGAAGCAGGCCCTGGAGCACGAGGACAGGGAGGACCTGGTGCCTTTCACCAAGGAGAAGAAAGGAAAGACCTTTGTGCCCAAGAAACCAGCGGAGATCCCTGAACACGAGCAGGTGATTCTGGAGCCGGAGCTGGAGGAGGCTCTGAAAAATGCCTCTGATGCAGAGATGTGTGATATTGCAGCCATCCTTGGAATGTACACGCTGATGAGCAACAAGCAGTACTACGACGCTCTGGGCACCACGGGCACCATCGCCAACACAGAGGGCATCAACAGTGTAGTGAAAGCAGATCCCTTCAAGATCTTCCCCGATGAGCCGCCCAACCCCACCAACGTGGAGGAAACCCTGGAGAGAATCCACAACAACGACAGCAGCCTGACTGAAGTCAACCTCAACAACATCAAGGACATTCCCATCCCAACACTGAAAGAGATCTTTGAGGCGATGAAGGGAAACTCTCAGGTGGAGTTTCTGAGCATCGCTGCGACCCGTAGCAACGACCCTGTCGCCTATgcctGTGCTGAGATGCTGCAGGAGAACACCAGCTTGCAGAGTCTTAACGTTGAGTCCAACTTCATCACTTCAGACGGCATGATGGCGATCATCAAAGCGATGGCCAGCAACGCCACACTGGTGGAGCTCAAGATCGACAACCAGAGGCAGAAGTTGGGCGACTCAGTTGAGATGGAGATCGCCTCCATGTTGGAGAACAACTCCAGCATCCTCAAATTCGGATACCACTTCACCCAGCAGGGTCCGCGCGCCAGAGCTGCCATGGCCATCACACGGAACAACGACATGAttCGCCAGCAGAGATTAAGATGAAAGCAATTTGGAGCGAACAGAAGAAGAACCACTTCAGCCCCTTGGAGCTTGCAGACAGACTCGTGCCAGCTTTCCCAATGTGGAGCGCCAGAGCTGAACGAATCCCCCCCCCGAATTAAGATGGGTCGTTGTGCAGTCCACCTAACATCCATGTCCgaccatttcatttcatttaccGCAGCCAGCTTTGTTTTGTAGACTGCTGAATTCATCATAAAGGCATGTATTAGGTCACAAGCAAAA

Function

symbol description
tmod4 Predicted to enable tropomyosin binding activity. Acts upstream of or within skeletal myofibril assembly. Predicted to be active in striated muscle thin filament. Is expressed in head muscle and myotome. Orthologous to human TMOD4 (tropomodulin 4).

NR:

description
PREDICTED: tropomodulin-4

GO:

id name namespace
GO:0005856 cytoskeleton cellular_component
GO:0005523 tropomyosin binding molecular_function

KEGG:

id description
K10370 TMOD; tropomodulin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039807109.1 True 1478 mRNA 0.54 10 32915320 32946228

Neighbor

gene id symbol gene type direction distance location
lysmd1 NA coding downstream 9847 32902016 ~ 32905473 (-)
ptpn23a ptpn23 coding downstream 511898 32376916 ~ 32403422 (-)
LOC120562214 NA coding downstream 750804 32161017 ~ 32164516 (-)
LOC120562213 NA coding downstream 772042 32138778 ~ 32143278 (-)
LOC120562215 NA coding downstream 778414 32127422 ~ 32136906 (-)
mcl1b NA coding upstream 72477 33018705 ~ 33021075 (-)
LOC120562448 NA coding upstream 168989 33115217 ~ 33130559 (-)
ctsk ctsk,LOC107086845,LOC106920373,LOC103156711,LOC106949137,LOC103477640 coding upstream 187882 33134110 ~ 33153043 (-)
LOC120563172 NA coding upstream 350022 33296250 ~ 33299540 (-)
atg5 atg5,LOC102785391 coding upstream 569466 33515694 ~ 33556965 (-)
G77910 NA non-coding downstream 20530 32867146 ~ 32894790 (-)
LOC120562114 NA non-coding downstream 96774 32784245 ~ 32818546 (-)
G77850 NA non-coding downstream 226689 32688412 ~ 32688631 (-)
G77847 NA non-coding downstream 448590 32466172 ~ 32466730 (-)
G77829 NA non-coding downstream 510682 32404292 ~ 32404638 (-)
G77949 NA non-coding upstream 153588 33099816 ~ 33101537 (-)
G77959 NA non-coding upstream 186015 33132243 ~ 33132533 (-)
G77984 s100a1,LOC105028680,LOC106605324,LOC107587912,LOC107689908,LOC107663298,LOC107598020,LOC107717776 non-coding upstream 338685 33284913 ~ 33286592 (-)
G77994 NA non-coding upstream 513794 33460022 ~ 33460244 (-)
G78064 LOC103362578,LOC107379244 non-coding upstream 539080 33485308 ~ 33486895 (-)
sema6e sema6c,LOC103360390,LOC104932808,LOC100704625 other downstream 270351 32480644 ~ 32644969 (-)
LOC120561540 LOC104957162,LOC106526711,LOC102237165 other downstream 480453 32425365 ~ 32434867 (-)
tbx20 tbx20 other downstream 924955 31976484 ~ 31990365 (-)
LOC120562592 dgkb,LOC102796570 other downstream 1288439 31612436 ~ 31626881 (-)
G77573 NA other downstream 1396284 31516455 ~ 31519036 (-)
ensab ensa,LOC103369031,LOC100695493,LOC101487776,LOC102787866,LOC102291346,LOC102199757,LOC108243249 other upstream 75870 33022098 ~ 33032895 (-)
LOC120561932 NA other upstream 644293 33590521 ~ 33602948 (-)
LOC120561752 NA other upstream 1149023 34095251 ~ 34097590 (-)
G78245 NA other upstream 1149415 34095643 ~ 34146296 (-)
LOC120561744 NA other upstream 1183310 34129538 ~ 34132432 (-)

Expression


Co-expression Network