rspo1 (rspo1)


Basic Information

Item Value
gene id rspo1
gene name rspo1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 26943236 ~ 26955284 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039807189.1
ccccccacctccatcCTACAGCCCCACGCTGTCTACTCCCTTTGCCAGTACCACCACCAGCGTGATGGCTTGTTGTGCCTCGGGCTTGTTTGGACTTGCTACCACGCCATCCCCCTCCACTACACAGACTCGCGGACGCAGCAGCCACTAGAGTGAccgatacagagagacagaggggagggaAAAAGGAGAGACAGACCGAGATAGAGAGCAGTACCACAGGAAAGAGGAGGGATCATCTGTCCCAGCAGCAGAGGGATCCACCTGTCCCAcagaggaaggggggggggcccccccacCTGATCCATCTGGTCGCAAGGGGGGGACCCTGCGTGGCCGCGAAGGCAACAGGGACTATGCAGCTGAGACTGGTGGCGCTGGCAATGGTCTTCCTCAGCTCCATGGGTCACAGCGATGCTCTCAAGCTCTCCAAAGCGAGAAGGCAGAGGCGGGTGAGTACTGAGGGGCCACCATCTTGCCCCAAAGGCTGTGACCGATGCTCGGAGTATAACGGCTGCATTAAATGTAGGCCCAAGCTCTTCATCTTCTTGGAGCGCAGTGACATCCGTCAGATAGGCGTGTGCCTCGCCTCCTGTCCTATGGGATACTTTGGCATGAGGAACCCAGAGGGCAACAACAGATGCACCCaATGTAAAATAGACAATTGTGAAGCGTGTTTCAATCGCAATTTTTGCACAAAATGTAAGGAGGGCTTGTATTCACACAGTGGGCGATGTTATGTCAGCTGCCCTCCAGGCCAGCGCACCGCCAATGAGACCATGGAGTGTGTCGgtcAGCGTTCTGCAGAGTGTGAACTGGGCGAGTGGAGCCAATGGGGTTCATGTATGAAGAAGAACAAAACATGTGGATTTAAAAAAGGTTCGCAGTCTCGGCTCCGCGAGCCCCTTCTGCCGGTCCACAGCCCAGACACCTCCCCGGCCTTTGTACCCTCACAGACCTGCGCTCCACAGACCGAGAGGAGGAAGTGCAATGTGGCCAAGATGCCCTGTGGGAAAGAGCAGAAGAGTAAGGGAGATCGACAAGATGACACaagcaggagagagagggagaatccACGCGGTCGAGCACGAGAAGGCAAAGATGGCAgtagaggagggggagggggagggggaggggggaagaggCGAAAAGGCCAGAGCAGGACCACCACTGCTCCTAGCATCACAACCAGCTCTGTCAGCTAAACTCTATCGCCCGCTGGATGGGGCtgagagaaacacagacaatGCCTCACCCAGCAGCACCAGCCACAGACAAAAGTCAAAGTGAtgaaggaatggaaggaattAATGCTGCTATGCATTGGAGAAGATGCAAAGAGAACTGGAGGACTGCTGCAACACAAAAGGCTTCTCTGAAGTTTTTGAATAGATGAACATATCTGGAAGATACTGGTGTCTTAGTGGTGTTCAGAAAGACTTGTTGATTTTCATTCCACCGTGAGGGATCACTGTTGGACTGCAAAGCCACGTTGAAGATTGTGGTTTGTCACGGTTCGAGTCATGAACCCGACCTATGTCACTTCTTGAACTAAGAACAGATTCCTGTGTTTGAAATGCAGCATTCAAGCTGGAAGTCTAATAATGAATGAAGGGTCTCTTCCGTCTCCTCTGTTCTATGATGTATTTTGTTCCAGTCcgattttaatcacaatctgttcttcatttgttttcatgtttgcGAGAGGTGGCAGATGGATTTTCTCAACAGCCGCTGTACGTGATGTAAAGACAATGAATAGTATTAAGTCTGGGTACCTTTTATTTCCTATTGtgagatgaaacaaaaaaaaaaaagaaaggcacTGGAAATCATTTGTGGTTGTTGAGGACAGAAGGTCTTCTACACAGTAGATTATTCCGACGAGGGAATCTATAACAAAATAACAAGCCTAAGAGAAGATGGAGTATTACTGGCTCAAATCCATCTCCGGTGTCTTGACACAAACTTTTGCCATTTGATAGCCTAGTTGTTTGTTCTGAATTAAATGTTGGCGTTTGTATCAGAAAATAACTGCGCCGAAAACAAGGAATAAAAACACAAGTATTTGCATGTGTACAAGATTGCATGTGCGAGCCTTTGTGCAtgcaaacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtctacctAACGTCTGGGTGTTTGTGTACTTTGTATGCATTTCTGCACGGGATCAAGTTGTTTGTCAATGGAACTTTGTCGtttgtacatgtgtgtatacGTCTGCACATGTGTGTTAATATTGGTCTCATAGATTGAAGGAATAGGTTCTGGAAAACAAGAGGAAGGAAATGTAAATGCACAGTGATATATCAAATATGCAGTAACTACAAGCCACTGATCATCATATAAGCCATCAAATCATCAGCTGCTCAGTAATCATATCTGTTTGCAACAGGGTCTGAAGATTTTGCACAACTATAATGTTTCCTACTGCTCAACTTTCAGAACAATCATAGCATTCTACACATTTATACTCCAAAAGCTTCATGACATAACAGACGTAAGTAAAagtttcagcttttttttcatagaATGTTTTCCATGGATCTGTTTGCTTTACACACAATATTAGTTTCAGGAGAAGTTACACgctacattattcattcatacTATGGATTGTGATAGTGAATATGTCAAACTGTGCTTATCATTAAACATACAAAGTATTAGAATCATCATGTAAAGCTTATTCTGTGAAAGCCTAAATAAAGTTCAGATGAAGTCATACACTGA

Function

symbol description
rspo1 Predicted to enable G protein-coupled receptor binding activity and heparin binding activity. Acts upstream of or within angiogenesis; hematopoietic stem cell differentiation; and vascular endothelial growth factor receptor signaling pathway. Located in Golgi apparatus and cytosol. Is expressed in several structures, including nervous system; regenerating fin; reproductive system; steroid hormone secreting cell; and tail bud. Orthologous to human RSPO1 (R-spondin 1).

NR:

description
R-spondin-1-like

GO:

id name namespace
GO:0001525 angiogenesis biological_process
GO:0048010 vascular endothelial growth factor receptor signaling pathway biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0005829 cytosol cellular_component

KEGG:

id description
K19471 RSPO1; R-spondin 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039807189.1 True 2767 mRNA 0.47 5 26943236 26955284

Neighbor

gene id symbol gene type direction distance location
dnali1 dnali1 coding upstream 53401 26886568 ~ 26889835 (+)
eva1ba eva1b,LOC104941913 coding upstream 218146 26712449 ~ 26725090 (+)
stk40 stk40,LOC103141542 coding upstream 267744 26656953 ~ 26675492 (+)
oscp1b oscp1,LOC106583166,LOC102779645 coding upstream 288137 26648212 ~ 26655099 (+)
mrps15 mrps15,LOC102779357 coding upstream 299009 26635677 ~ 26644227 (+)
utp11 utp11 coding downstream 57809 27013093 ~ 27015102 (+)
LOC120561567 mycbp coding downstream 348026 27303310 ~ 27305006 (+)
pnrc2 pnrc2,LOC100697533,LOC104941893,LOC101487357 coding downstream 396567 27351851 ~ 27355833 (+)
si:dkeyp-97a10.3 NA coding downstream 1092359 28047643 ~ 28059160 (+)
LOC120562747 LOC103369304,LOC107379318,LOC104956022,LOC100707205,LOC107082966 coding downstream 1118906 28074190 ~ 28077263 (+)
G76338 NA non-coding upstream 77681 26864720 ~ 26865555 (+)
G76313 NA non-coding upstream 210334 26731306 ~ 26732902 (+)
G76276 NA non-coding upstream 266019 26676995 ~ 26677217 (+)
LOC120562862 NA non-coding upstream 343125 26576712 ~ 26600111 (+)
G76251 NA non-coding upstream 656736 26286300 ~ 26286500 (+)
G76393 NA non-coding downstream 59856 27015140 ~ 27016107 (+)
G76412 NA non-coding downstream 101499 27056783 ~ 27057005 (+)
G76418 NA non-coding downstream 317274 27272558 ~ 27272827 (+)
G76419 NA non-coding downstream 334884 27290168 ~ 27291432 (+)
G76437 NA non-coding downstream 371794 27327078 ~ 27330040 (+)
G76355 snip1 other upstream 56690 26883450 ~ 26886546 (+)
G76315 NA other upstream 127845 26808118 ~ 26815391 (+)
LOC120562432 LOC101064911,LOC106524684,LOC104919574,LOC106098620,LOC102206486,LOC108235477,LOC102229209,LOC108166993 other upstream 295621 26645384 ~ 26647615 (+)
G76192 NA other upstream 800609 26139901 ~ 26142627 (+)
taf12 taf12 other upstream 1147717 25792818 ~ 25795519 (+)
G76417 NA other downstream 329254 27284538 ~ 27288457 (+)
fam110d LOC104924711,LOC103367059 other downstream 912160 27867444 ~ 27885464 (+)
G76511 NA other downstream 993599 27948883 ~ 27952580 (+)
ago1 ago1,LOC102230823,LOC103367053,LOC107379324,LOC103388087,LOC107082980,LOC101466039,LOC104959479 other downstream 1007406 27962690 ~ 27983714 (+)
LOC120561771 LOC103367052,LOC101466533,LOC107379323,LOC100706402,LOC103139281 other downstream 1028769 27984053 ~ 28027526 (+)

Expression


Co-expression Network