tsnare1 (tsnare1,LOC101472715)


Basic Information

Item Value
gene id tsnare1
gene name tsnare1,LOC101472715
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 6636852 ~ 6805600 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039807192.1
GCAGTCGCAACCCATTTGGAGGTCCTACGAGGCAGGGCTACCAGCCAGTAGacaCTTCATTCAGCAGCAAACCAACAAAGTCATCACCAGCACAAGCCAACTCATCAAACAGCTCTCTGATATAATCAGTGGCTCTTCACGGCAAGACCGTCTGCACCTGACCAGACTAAAGACTGAACTCTCAGAGTCTGTGCAGCGCTATGGGGATCTGCAGAAGAAAATTGCAGAGCGTTCAAGGGCCTTGCTCCCTCCAGCGCAAACAGACAAGAATAAGAGTCCTCAGACCCCATCCACTGAGCAGATGGAGGAGGGTCCACTGTTTGGAGAAGCAGTAGGCTCCGAGGGAGGGGCTCAGGCTTTCCTGTCAGAGATCAGTGAGGAGGACGTGGAGGCGCTTCGCCAAAGAGAGGAGGCCCTGCTACACATCGAAAGAGACATGCTGGACGTCAGTCAAATCATGAAGGATCTGGCCAGTATGGTCCATGAACAAGGCGACACCATagACAGCATTGAAGATTACATCCAGACTACATCATCCAACGTTGaatcagccaatcaggagcTTGCAAAAGCTAACCAATACCAGAGGCAGCTGAGGAAGAGGAAATGCTACCTGCTGGTGGCCGGAGGCATCGTTCTCATcgtcctcatcatcatcattgctGTTTCAGCGAGGAAATGAGACCGGCCACTGTGGTAGCTGCTGTCATTACCGTGTCACCGCAGCGCTCCAGCCCGGTCTGATCCCTGACCCGAGCAGCTGGTTTCCAGTAGGAGGGAGCTGCCCTGCAACAACGTCTCTACTCCATCATCCCTGCCTCTGTTTACAACTGCATCAGCCTGGGGACAGAGGCCTTTCTCAGCTTACCAATTTGTCCAGAGTCCCGGTCGGAGACTCTCATGTAAtcctttaatttatttatttttcgtTGCTGTTACTGTTAGTGTGTCTCATTTCGGATACTTCTGTGAGTGCACTTACATGTAGTGCACTGTGAACACTTGTAGAGTGCATACATTTCGACAGGGAAGCGttgtctcaaatcgcgcacaGCCGTTAAGCACTTACCGGAAattactcttcttcttcttcagtttagtctcacattgccagaccttcttccacagcgctgcggaggaaggtcagGCTAGTCAACACAGCATTCCGAGAtaagagaaaaacgtgctctgatttattagcatttctttaaaccaatcacaatcgtcttgggcggcgctaagcggcagacggagccacggtgcctctgcaaaatagcctcgggaaggaacttgttttggtggaacacattgaagagtttagaacgccaacacaaaggaagaggacgGTATCGGATGTCCGCCTGAAAATagtgacatctggcggaatatccggcggcaccggagcaatcgcagaagtggaacatcatggatatagactaatttaatgtttaattgcaGCCGGGTGGAGCTTTAGCGCCACCTTTTCTCATCCACCCAGCTTGTTTTCTCACTAACTGCAACAGTATAGTGGTACATATCGGAAAAACACGTGTATATTATGTATAGTTTGTGTTTCGCTGTTTCAATAACAACCGCTGCAGTATCCTCGCCCGCCACTTCCACAAGTTTAAAAACACGTTGGTAGTGCCGTAGCGTCCGCTCCGTAGCAAAGATGGCATCTGTTGAGCGCGAGTAGTGTCCAGCGATACACACTCAACATTTCTGCCGCTTTTGAGTGCAGCATCCGGGTACTGGCATGTGCACTGCATGTGGCCACACGTGTAAATGCAATATGTACTCAAAAAGAGCAAGTGCAAGTACAgaagtgcgcgatttgagactCAAATGTTATCATCAAAGCTGAAGTGACACATGTGAATTTAGGGATTACATCAGAGGCACACAGCTGGGTTGTTTCCTGTCTTGGCTGTCTCCTGTGGAGGGTTACTGTTGTATATGACAGACCTTCAGCTCCTAACTGTGCTGTTTTATCAGAAAACCCAGATGAAGGTGGAGCAGGAGTATTAGGGTGAGACAAGGCAGCTTCACTGCTGTACTGTATGCTCTGTATCTTTCATGTATTTGTACTGAAATTGATTGTTTATCAGCTtgtagtgttatttattcattaatatATTGTAGCGTTTGTTGGTAAATAttgtttgaccaaatacatcttCCAGAATAAAAGTCTTAAGTTcaacagcaa

Function

symbol description
tsnare1 Predicted to enable SNAP receptor activity and SNARE binding activity. Predicted to be involved in intracellular protein transport; vesicle docking; and vesicle fusion. Predicted to act upstream of or within vesicle-mediated transport. Predicted to be located in membrane. Predicted to be part of SNARE complex. Predicted to be active in endomembrane system. Predicted to be integral component of membrane. Orthologous to human TSNARE1 (t-SNARE domain containing 1).

NR:

description
t-SNARE domain-containing protein 1-like

GO: NA

KEGG:

id description
K13814 TSNARE1; t-SNARE domain-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039807192.1 True 2209 mRNA 0.48 9 6636852 6805600

Neighbor

gene id symbol gene type direction distance location
LOC120561876 NA coding upstream 822210 5812877 ~ 5814642 (+)
LOC120562247 NA coding upstream 1279558 5355807 ~ 5357294 (+)
LOC120562920 mc5r,LOC101487483,LOC100693278,LOC102795483 coding upstream 1571179 4946358 ~ 5065673 (+)
cep192 cep192 coding upstream 2065543 4474006 ~ 4571309 (+)
seh1l seh1l coding upstream 2164185 4463437 ~ 4472667 (+)
LOC120562880 NA coding downstream 199004 7004604 ~ 7029761 (+)
fzd1 fzd1,LOC104958298,LOC104925482 coding downstream 490346 7295946 ~ 7298242 (+)
LOC120561797 NA coding downstream 859638 7665238 ~ 7707591 (+)
LOC120561799 NA coding downstream 926226 7731826 ~ 7741034 (+)
rbm42 rbm42 coding downstream 962159 7767759 ~ 7783482 (+)
G70965 NA non-coding upstream 40906 6595383 ~ 6595946 (+)
G70962 NA non-coding upstream 48558 6587866 ~ 6588294 (+)
LOC120562135 NA non-coding upstream 204725 6430535 ~ 6432127 (+)
G70934 NA non-coding upstream 355146 6281333 ~ 6281706 (+)
G70930 NA non-coding upstream 381750 6253784 ~ 6255102 (+)
G70982 NA non-coding downstream 39891 6845491 ~ 6845735 (+)
G70983 NA non-coding downstream 43550 6849150 ~ 6849410 (+)
G70993 NA non-coding downstream 55640 6861240 ~ 6861544 (+)
G70996 NA non-coding downstream 60009 6865609 ~ 6865945 (+)
G70998 NA non-coding downstream 65531 6871131 ~ 6871929 (+)
G70894 NA other upstream 675998 5960455 ~ 5960854 (+)
si:ch211-198c19.1 NA other upstream 1041952 5591199 ~ 5594900 (+)
LOC120562244 zdhhc3,LOC103364625,LOC101488043,LOC107102987 other upstream 1169762 5336214 ~ 5467090 (+)
LOC120562617 ldlrad4 other upstream 1744795 4810388 ~ 4892057 (+)
G70654 NA other upstream 1970746 4665784 ~ 4666106 (+)
cdk14 cdk14 other downstream 233563 7039163 ~ 7292435 (+)
znrf2b znrf2 other downstream 651167 7456767 ~ 7500182 (+)
G71147 LOC103388722,LOC104941093,LOC103369890 other downstream 925422 7731022 ~ 7801380 (+)
G71309 NA other downstream 1316001 8121601 ~ 8122239 (+)
ano10a ano10 other downstream 1477780 8283380 ~ 8309744 (+)

Expression


Co-expression Network