lingo4b (LOC104947071,LOC108243198)


Basic Information

Item Value
gene id lingo4b
gene name LOC104947071,LOC108243198
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 33175909 ~ 33200642 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039807225.1
GTGTCGGGTTGTGAGTCAGCGGCAGCCACTATAAGAGCTGATTTCATGAGGAGCAGGGATGAGATAAAGACTGTGCAGCTCTGGGACTGTCGACAACTCTGCCACTCAGAGGAGAGGCTGCAGCGAGGGATCTCCACACTATGGAAACTGTCTGATGGTGGAGAGTGAgaagctgcagctgctgcagGCCACTCTAAAGGGCATGTTTTTGATGGAACTGCATCTCTACAGAGGACTTGACTCAAGTCTGATTTCAACTTGACTGCCACTGGCTATGAGAATCTGCACTCCGAGACTGAAACGGCTGGGGGTAAGATGTTTGTGGAGTCAGTCGTCCGATGGGGGGCTTGGAGCATTCTGCTTCAGTTTGGACTTGGTGTATCTGCAGGAAGCTGTCCTCCACGCTGTGTGTGTCGACCTGAGGCGAAAGAAGTGATCTGCTCCGGCAAACATTTGAACTCAGTGCCAGAAGGCTTTTCTGGTGATGCCAGGCGTTTGGATTTATCCCACAATAAGATTAAGACTGTTGGGCGCCGCCAGTTCTCTGGTCTCCTGCAACTTCAAGAGTTGGATCTCAGTGATAACATAATCTCCATGATTGAGGTGGAGGCTTTCCAGGGCCTACAGAATCTCAGGACACTTCGGATTAAGAATAATCGACTCAAGATTATCCCAGTTGGGGTGTTTTCTGGCCTATCCAGTCTGCGCTGTCTGGATTTGAGCCAGAATGAGATTCTGGTCTTCCTGGACTACACCTTCAAAGAATTGGTGAACCTGCAAACGCTGGAAGCCGAAGAGAATGACTTGGTCTTCATCTCCCAGCGGGCTTTCTTTGGTCTGCAGAATCTGCAGGAGCTCAATTTAGATCGCAGCAACCTGACCTCGGTTCCTACCGAGGCATTGTCCCAACTCCAGAGCCTGACCCATCTTCGCATACTACGCCTCACCATTTCTACACTCCCCAACAATGCTTTCCGACGGCTACACCGTCTTCGTAGCCTCCTGATTGCAAACTGGCCAGCATTGGACAATGTGGCTAGCAACAGCCTGATTGGTCTTAATCTGACCTCACTTGTCATCAGCAACTGCAACCTAAGTGCTGTTCCTTACTCAGCATTTCGTCATCTGGTGTATCTTCGCTACCTGGACCTGTCCTATAACCCCATCACTGTTATCCAAGGTAATCTGCTAGGTGACCTCCTGAGACTCCAAGAGTTACACCTAGCAGGGGGGAGCCTGCTAAGAATAGAGCCAGGGGCCTTTAGGGGACTGGCCTACTTCCGCATGCTCAATGTGACCTCCAATCAGCTCACTACTTTGGAGGAGAGCGTCTTCCACTCTGTGGGGAACCTTCAGGTTTTGCGGTTGGATGGGAATCCCCTAGCATGTGACTGCCGGCTTCTCTGGGTGGTCCGTCGTCGATTGCGCTTGAACTTTGATGGACATCAGCCCTCTTGTTTGTCTCCTGATGCAGTGAGACATCGTGAATTCAGAGACTTCTCCGAGAAGGAGCTCCCGAGGCTCTTTACCTGCCGCCCTGCCCGTATAATGGACCGCAGGCCGCAGGAGGCGAGAGTAGAGGAGGGCACGACAGTTATCTTCTCCTGTAAGGCTGATGGGGATCCATTCCCATCTATCACCTGGATCTCATCCCATAAGAATGTGGTTTCTCCAACAGGACGAATCAGAGTTTTGCTCAATGGTACTCTAGAAGTGCGTTTTGCCCAAGTTCAGGACAGTGGCACATATCAGTGCCTGGCGGGCAATGCAGCCGGCAATGACAGCCTAACTGTCGGTCTGTACGTGAAGGGGCTCCCTCGTAACCGAACCATCCCCTTCTTCTCAGAGGAGGGCTGGGTAGAGCCTTCAAACTCCCAAGCTGCCAACTCCTCAGCTCAAATGGCCAAACCATACCCGTTTGACGCAAAGACCCTGATCATTGCCACCACCATGGGCTTCCTGTCTTTCCTCAGCTCAGTGGCCATCTGCTTTGTCTTCATGTTCTTCTGGAGCCAGAGCAAAGGTCAGATCAAGCACACAGCAACTATTGACTTTGTTCCTCGGTCTTCAATGGGTGGTGGAGGGGACGGAGGTGACGGTGGCAGGTTCACCATGAAACTTATTTAAAGCCAAGGAAGAGGTGAAAGGGGCCTCCATATTGACTGAGTTATTCTGCACTATGGTCCCTCCCTATTGGAACACTCAAGGACGGAAACCAATACA
>XM_039807226.1
CTGAGCGGAGGGATGGAGATGCGGAGGGCGCAGCATCAGCAGAGCCGCGGTCAGCATCACAGGCAcacaagcaggcaggcaggcaggcaggcaggcaggcagacagacaggcaggcaggcaggcaggcacagaCGGGCAGAGTCGACCCAAATTATTTGAAGTAGCGCAATTATACGAAAACTCCCCGAGGTATTCGACAGTCGGAGGAGGAAATTAATGAAGAAGGAGGGCGAAGTGAATTGCGCGACTCCGACGCGACAGATGTTGGAAAACTCTGGTTGAATGTagacagaagaagaggaagagaaggaagaagagaaagTGTCCCGAACAGAGATGAACACGTTGTTCTGTTGGAGACGGACGATGAGCGTTGAAGATGTGGAAGCTTTGTTGCGATGTTTCCTTCACTGAAAGCTTCAGCTGGCCACTCTAAAGGGCATGTTTTTGATGGAACTGCATCTCTACAGAGGACTTGACTCAAGTCTGATTTCAACTTGACTGCCACTGGCTATGAGAATCTGCACTCCGAGACTGAAACGGCTGGGGGTAAGATGTTTGTGGAGTCAGTCGTCCGATGGGGGGCTTGGAGCATTCTGCTTCAGTTTGGACTTGGTGTATCTGCAGGAAGCTGTCCTCCACGCTGTGTGTGTCGACCTGAGGCGAAAGAAGTGATCTGCTCCGGCAAACATTTGAACTCAGTGCCAGAAGGCTTTTCTGGTGATGCCAGGCGTTTGGATTTATCCCACAATAAGATTAAGACTGTTGGGCGCCGCCAGTTCTCTGGTCTCCTGCAACTTCAAGAGTTGGATCTCAGTGATAACATAATCTCCATGATTGAGGTGGAGGCTTTCCAGGGCCTACAGAATCTCAGGACACTTCGGATTAAGAATAATCGACTCAAGATTATCCCAGTTGGGGTGTTTTCTGGCCTATCCAGTCTGCGCTGTCTGGATTTGAGCCAGAATGAGATTCTGGTCTTCCTGGACTACACCTTCAAAGAATTGGTGAACCTGCAAACGCTGGAAGCCGAAGAGAATGACTTGGTCTTCATCTCCCAGCGGGCTTTCTTTGGTCTGCAGAATCTGCAGGAGCTCAATTTAGATCGCAGCAACCTGACCTCGGTTCCTACCGAGGCATTGTCCCAACTCCAGAGCCTGACCCATCTTCGCATACTACGCCTCACCATTTCTACACTCCCCAACAATGCTTTCCGACGGCTACACCGTCTTCGTAGCCTCCTGATTGCAAACTGGCCAGCATTGGACAATGTGGCTAGCAACAGCCTGATTGGTCTTAATCTGACCTCACTTGTCATCAGCAACTGCAACCTAAGTGCTGTTCCTTACTCAGCATTTCGTCATCTGGTGTATCTTCGCTACCTGGACCTGTCCTATAACCCCATCACTGTTATCCAAGGTAATCTGCTAGGTGACCTCCTGAGACTCCAAGAGTTACACCTAGCAGGGGGGAGCCTGCTAAGAATAGAGCCAGGGGCCTTTAGGGGACTGGCCTACTTCCGCATGCTCAATGTGACCTCCAATCAGCTCACTACTTTGGAGGAGAGCGTCTTCCACTCTGTGGGGAACCTTCAGGTTTTGCGGTTGGATGGGAATCCCCTAGCATGTGACTGCCGGCTTCTCTGGGTGGTCCGTCGTCGATTGCGCTTGAACTTTGATGGACATCAGCCCTCTTGTTTGTCTCCTGATGCAGTGAGACATCGTGAATTCAGAGACTTCTCCGAGAAGGAGCTCCCGAGGCTCTTTACCTGCCGCCCTGCCCGTATAATGGACCGCAGGCCGCAGGAGGCGAGAGTAGAGGAGGGCACGACAGTTATCTTCTCCTGTAAGGCTGATGGGGATCCATTCCCATCTATCACCTGGATCTCATCCCATAAGAATGTGGTTTCTCCAACAGGACGAATCAGAGTTTTGCTCAATGGTACTCTAGAAGTGCGTTTTGCCCAAGTTCAGGACAGTGGCACATATCAGTGCCTGGCGGGCAATGCAGCCGGCAATGACAGCCTAACTGTCGGTCTGTACGTGAAGGGGCTCCCTCGTAACCGAACCATCCCCTTCTTCTCAGAGGAGGGCTGGGTAGAGCCTTCAAACTCCCAAGCTGCCAACTCCTCAGCTCAAATGGCCAAACCATACCCGTTTGACGCAAAGACCCTGATCATTGCCACCACCATGGGCTTCCTGTCTTTCCTCAGCTCAGTGGCCATCTGCTTTGTCTTCATGTTCTTCTGGAGCCAGAGCAAAGGTCAGATCAAGCACACAGCAACTATTGACTTTGTTCCTCGGTCTTCAATGGGTGGTGGAGGGGACGGAGGTGACGGTGGCAGGTTCACCATGAAACTTATTTAAAGCCAAGGAAGAGGTGAAAGGGGCCTCCATATTGACTGAGTTATTCTGCACTATGGTCCCTCCCTATTGGAACACTCAAGGACGGAAACCAATACA

Function

NR:

description
leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039807225.1 False 2223 mRNA 0.52 3 33196215 33200642
XM_039807226.1 True 2463 mRNA 0.52 3 33175909 33200642

Neighbor

gene id symbol gene type direction distance location
onecutl LOC106524064,LOC104923936,LOC108243192 coding upstream 79771 33087190 ~ 33096138 (+)
hormad1 NA coding upstream 126772 33032239 ~ 33049137 (+)
LOC120562446 NA coding upstream 225199 32947311 ~ 32950710 (+)
scnm1 LOC104949611 coding upstream 264717 32905361 ~ 32911192 (+)
tnfaip8l2b tnfaip8l2 coding upstream 275580 32892531 ~ 32900329 (+)
si:ch211-113g11.6 LOC103362574,LOC103388694,LOC108243248 coding downstream 6065 33206707 ~ 33260917 (+)
tlr18 LOC103362575 coding downstream 63088 33263730 ~ 33278517 (+)
s100a1 s100a1,LOC105028680,LOC106605324,LOC107587912,LOC107689908,LOC107663298,LOC107598020,LOC108272706,LOC108441918 coding downstream 82405 33283047 ~ 33286346 (+)
prdm1a prdm1,LOC103362578,LOC100706221 coding downstream 272530 33473172 ~ 33489674 (+)
dctn3 dctn3,LOC102785116 coding downstream 356609 33557251 ~ 33566277 (+)
G77894 LOC103369035,LOC103362570 non-coding upstream 45036 33115275 ~ 33130873 (+)
G77903 NA non-coding upstream 63844 33111426 ~ 33112065 (+)
G77900 NA non-coding upstream 69338 33106209 ~ 33106571 (+)
G77899 NA non-coding upstream 70276 33101903 ~ 33105633 (+)
G77895 NA non-coding upstream 76361 33097628 ~ 33099548 (+)
G77986 NA non-coding downstream 95609 33296251 ~ 33299542 (+)
G77991 NA non-coding downstream 123962 33324604 ~ 33325020 (+)
G77993 NA non-coding downstream 259380 33460022 ~ 33460235 (+)
G78001 NA non-coding downstream 292782 33493424 ~ 33493660 (+)
G78002 NA non-coding downstream 315067 33515709 ~ 33518515 (+)
G77888 NA other upstream 74375 33100413 ~ 33101534 (+)
LOC120561717 NA other upstream 754437 32405133 ~ 32421472 (+)
G77682 tbx20 other upstream 1196000 31976318 ~ 31979909 (+)
G77447 NA other upstream 2039763 31134829 ~ 31136146 (+)
rab5ab rab5a,LOC104947906,LOC103388351,LOC105936747,LOC100704868,LOC101078239,LOC104931780 other upstream 2444300 30687338 ~ 30731609 (+)
bmper bmper other downstream 625445 33826087 ~ 33879132 (+)
LOC120562157 NA other downstream 693718 33894360 ~ 33904285 (+)
sh3bp5b sh3bp5,LOC102783023 other downstream 789900 33990542 ~ 34042648 (+)
G78200 NA other downstream 1328713 34529355 ~ 34544379 (+)
LOC120562567 NA other downstream 1638515 34839157 ~ 34856532 (+)

Expression


Co-expression Network