LOC120563118 (scgn,LOC103369094,LOC103151166,LOC106960462)


Basic Information

Item Value
gene id LOC120563118
gene name scgn,LOC103369094,LOC103151166,LOC106960462
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 16816442 ~ 16831163 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039807231.1
GTCAGAAAGAGCATATGTCAACCAAGCAGACTGAACAGTGCAACACAGTTTGTCACCTCAGTCCTTGTTGTTTTTACGTGTTAAAGTTGACTCTGTCTTTCTTAAAATGGACACTGCTTTTAAAAACCTGGATGCAGCTGGTTTCCTGGAAATCTGGCAACACTTCGATGCAGATGATAATGGCTACATTGAGGGCAAAGAGCTTGATGACTTTTTTGTTCACATGATGAAGAAACTGGGTCATCAGGAGaaagtgactgaagagagagtcCAGAGACTGAAGCAAAGGTTTATGTCCGCCTATGATGTCACTGCTGATGGGAAACTACAGATTGAAGAGTTGGCCAATATGATCCTCCCTGAAGATGAGAACTTCCTCTTAGTTTTCCGCAGAGAAGCTCCTCTGGACAACAGTGTTGAATTCATTAAGATATGGAGGAAGTACGATGTTGACTGCAGCGGCTACATATCAGCTCGGGAGCTCAAGGCTTTCCTGAAAGATCTGTTCCAACAGCatcaaaaggaaatgccatctGATAAGCTGGAGGAGTATACAGACACAATGATGAAAAtctttgacaaaaacaaggATGGCTGTTTGGATTTGAACGACATGGCCAGGATCTTGGCTTTAGAGGAGAATTTTCTGCTCAAGTTCGAGATGGATGCCTGCagtaaagaggagagaaagagagactttGAGAAGATCTTTAACCATTATGATGTTAGTAAGACAGGAGCGCTGGAGGGTCCTGAGGTGGACGGCTTTGTCAAAGACATGATGGAGCTGGTCAGGCCCAATCTCACAATTCCTGAGCTGGACAAGCTGCGAGGCATTCTGCTGCGTCACTGTGACGTCAACAAGGACGGAAAGATCCAGAAAAATGAGCTGGCTCTGTGTCTGGGAGTCAGACATAAACTTAATTAGAGATTATAGTATTCTGAAACACTGACCCTGTATTCGTTGTATGGTCATCAATGGTAGAATGTTGTGATGTATCCAGATCAGTCTAATTACTCGGTTATTTGAGGTCAGTATTCATAAAGTTATTTGATCCTGAAAATGATAGAAACACTATTTGATACTgcgtaataaaaaaaataattaaatgactATATCATCTATGATTTGAAATGACATGAAATGTGTTTCTTGTGCTTGTTGTAGAATTTGTGGTACATTAATCATTCTGTTtgcttttgaaaacaatgtttttcaTTGTAATATTCTTCTTTTAGTTTGGTGCTGGAGTTTGTTGGCTATTGAATAAAACAGAAGTTTATGCAGAAAGTAGCCTGCTAGTTATTTTGCAGTGGAGCagtacacataaaaatggcCGCCGCTCTGACCATTCTGCTACGTTGATTTGAATGAGAATATCTTTCTATTCAATTCTACTTCTGACTACTACTGACGTTTGGCTATTTGCATGTTTCTCTGCCAAAGAAGGctgtagtacagtatgttgaataaagcaaTGATGAAGTAATGAG

Function

symbol description
scgn Predicted to enable calcium ion binding activity. Acts upstream of or within brain development. Predicted to be located in cytoplasm. Predicted to be active in several cellular components, including cytosol; dendrite; and terminal bouton. Orthologous to human SCGN (secretagogin, EF-hand calcium binding protein).

NR:

description
PREDICTED: secretagogin

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K23928 SCGN; secretagogin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039807231.1 True 1494 mRNA 0.40 11 16816442 16831163

Neighbor

gene id symbol gene type direction distance location
LOC120562315 NA coding upstream 185 16732632 ~ 16816257 (+)
LOC120562939 NA coding upstream 87094 16726348 ~ 16729348 (+)
LOC120562690 NA coding upstream 91886 16721636 ~ 16724556 (+)
LOC120562688 tnfrsf11b,LOC103369092 coding upstream 97918 16632876 ~ 16718524 (+)
mboat1 mboat1 coding upstream 307701 16495726 ~ 16508741 (+)
LOC120562165 nov coding downstream 14790 16845953 ~ 16850232 (+)
sntb1 sntb1 coding downstream 26860 16858023 ~ 16897965 (+)
LOC120561714 NA coding downstream 153448 16984611 ~ 16990597 (+)
LOC120561713 ptk2 coding downstream 164146 16995309 ~ 17065077 (+)
mrs2 mrs2,LOC105917271 coding downstream 248244 17079407 ~ 17093876 (+)
G72852 NA non-coding upstream 85398 16730837 ~ 16731044 (+)
G72801 NA non-coding upstream 321867 16494237 ~ 16494575 (+)
G72798 e2f3 non-coding upstream 326061 16489593 ~ 16490381 (+)
G72797 NA non-coding upstream 330523 16485713 ~ 16485919 (+)
G72796 NA non-coding upstream 333944 16482255 ~ 16482498 (+)
G72859 NA non-coding downstream 128625 16959788 ~ 16962840 (+)
G72879 NA non-coding downstream 160553 16991716 ~ 16991989 (+)
G72862 NA non-coding downstream 234426 17065589 ~ 17065911 (+)
trnar-acg_16 NA non-coding downstream 537540 17368703 ~ 17368775 (+)
G73019 NA non-coding downstream 561105 17392268 ~ 17403627 (+)
G72750 LOC104952694,LOC106925895 other upstream 744241 16018359 ~ 16072201 (+)
irx4a LOC103360443,LOC102233360,LOC103478376,LOC108232226,LOC101474805,LOC102784018,LOC102295185,LOC102202030,LOC104961814,LOC103145173 other upstream 1256150 15553464 ~ 15560292 (+)
LOC120561718 LOC107101581 other upstream 2183721 14626478 ~ 14632721 (+)
G72506 NA other upstream 2390262 14425794 ~ 14426180 (+)
LOC120562174 rbms3,LOC101066789,LOC103370884 other upstream 2446351 14175817 ~ 14370091 (+)
G73031 LOC103366415 other downstream 618422 17449585 ~ 17452568 (+)
ubxn11 NA other downstream 625480 17456643 ~ 17461118 (+)
G73123 phactr4 other downstream 814350 17645513 ~ 17647186 (+)
paqr7b LOC107588505,LOC104938075,LOC103388542 other downstream 919767 17750930 ~ 17779130 (+)
kcnn4 kcnn4,LOC104953880,LOC100704922 other downstream 1567893 18399056 ~ 18420721 (+)

Expression


Co-expression Network