hapln2 (hapln2,LOC102779935)


Basic Information

Item Value
gene id hapln2
gene name hapln2,LOC102779935
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 34952052 ~ 34964798 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039807292.1
GTATGGCAGCTGAACATTCAGGGCTCCGACAGAGGAGCCAACAGGGATGAACAGTTGCTTCCACTTTCCAAAGTTAGGAATAACCCAGGAATTCTTTGAAGGCATCGTCGTCATGTTGCACAACGGAGGAGGATGAGGGAACATCTGCGTCTTTTCAACTTCACAGGAGCTGGAGGAGTGACTCCCTTCATAATGAACTGTGCTGTGATTCTTCTATTAACATCGAGCTGCTTCACCTGGTCCTCAGCTATATATACCCCCAACAGGGCAGCACCCAAGAAGCTGAAGTACCTCCTGGAGCCGCCTGTTTACGCCGAGGTGGTTGCCCGAAGGGGAGAAAACGCCACCTTGCCGTGTATCCTGAGAACCAAACCCAGCCATTACAAAGTGAAATGGACCAAGCTGGAGTCAGAACACATAGGTCGGGAGAACATTATCATGATATCAAACGCACATGCCTTCAAGCCATACGGCCATCTTGGGCCGCGGGCTTCTCTTCGGAAGGCTCACACCATGGACGCCTCCCTGCAGCTCAGCCGCCTTGAGCTGGAAGATGGCGGCACGTACCGCTGCGAGCTCGTCAACGGCATCGAGGATGAGAGTGTTGCCATTACTTTGAGGATTGAAGGAGTGGTGTTTCCGTATCAGAGTAAAAATGGCCGCTACAAATTCACTTTCCATGAGGCTAAGGAGGTTTGTGCTGAGCAAGACGGCACATTAGCCTCATACATCCAGCTGTTCAGAGCGTGGACGGAGGGTCTGGACTGGTGCAATGCCGGTTGGCTCCGTGATGGGACCGTTCATTACCCCATTATTCATCCGCGGCCGGCCTGTGGAGGTGACCTGCTCCCCGGCATCCGCAGTTATGGGCCGAAGGATAAAATCAACGATCGGTTTGACGCTTTCTGCTTCACCTCGCAGACATCTGGCTCTGTCTCCTACATATCAGGCTCTTTCTCCTTCGAGCAGGCAGAACACGCATGCCAACGTCGGGGAGCTGAGTTGGCGTCGGTCGGCCAACTTTACTCTGCCTGGCGATTCCAAAACTACGACCAGTGTGACGGCGGATGGCTGAAGGACGGCAGCGTACGGTTTCCCATCAGCAAGCCCAGGGAGCACTGTGGGGGCATCCCGGAACCAGGGGTGCGCTCATTTGGATTCCTCAACAAGACGATGCATCTGTACGGCGCCTTTTGCTATAGGTAGCCCCAAAATAAAGAACAAATACACTTCTCACATCCGTTTCTCAACACAGCTGTGAGTCTAAGCAAGAAAACCAGAGGCCCAGAAATTACTGCACAACATATACAGCTTGATCTGCCAACCGATGAGCAAGAAAATTCACATCTGAAGCTACAGACCATTACGGACTGTAGAATTATaagtttatatttaaaaatgaaatagttAATTCTTAAACAAAAGGCCCTACTTACATCTAACTTAGGGTTTTTGGAGACCCAAATATAGGTTGGACAGCCAT
>XM_039807293.1
GTATGGCAGCTGAACATTCAGGGCTCCGACAGAGGAGCCAACAGGGATGAACAGTTGCTTCCACTTTCCAAAGTTAGGAATAACCCAGGAATTCTTTGAAGGCATCGTCGTCATGTTGCACAACGGAGGAGGATGAGGGAACATCTGCGTCTTTTCAACTTCACAGGAGCTGGAGGAGTGACTCCCTTCATAATGAACTGTGCTGTGATTCTTCTATTAACATCGAGCTGCTTCACCTGGTCCTCAGCTATATATACCCCCAACAGGGCAGCACCCAAGAAGCTGAAGTACCTCCTGGAGCCGCCTGTTTACGCCGAGGTGGTTGCCCGAAGGGGAGAAAACGCCACCTTGCCGTGTATCCTGAGAACCAAACCCAGCCATTACAAAGTGAAATGGACCAAGCTGGAGTCAGAACACATAGGTCGGGAGAACATTATCATGATATCAAACGCACATGCCTTCAAGCCATACGGCCATCTTGGGCCGCGGGCTTCTCTTCGGAAGGCTCACACCATGGACGCCTCCCTGCAGCTCAGCCGCCTTGAGCTGGAAGATGGCGGCACGTACCGCTGCGAGCTCGTCAACGGCATCGAGGATGAGAGTGTTGCCATTACTTTGAGGATTGAAGGAGTGGTGTTTCCGTATCAGAGTAAAAATGGCCGCTACAAATTCACTTTCCATGAGGCTAAGGAGGTTTGTGCTGAGCAAGACGGCACATTAGCCTCATACATCCAGCTGTTCAGAGCATGTCTCCTCCCGCAGCGTGGACGGAGGGTCTGGACTGGTGCAATGCCGGTTGGCTCCGTGATGGGACCGTTCATTACCCCATTATTCATCCGCGGCCGGCCTGTGGAGGTGACCTGCTCCCCGGCATCCGCAGTTATGGGCCGAAGGATAAAATCAACGATCGGTTTGACGCTTTCTGCTTCACCTCGCAGACATCTGGCTCTGTCTCCTACATATCAGGCTCTTTCTCCTTCGAGCAGGCAGAACACGCATGCCAACGTCGGGGAGCTGAGTTGGCGTCGGTCGGCCAACTTTACTCTGCCTGGCGATTCCAAAACTACGACCAGTGTGACGGCGGATGGCTGAAGGACGGCAGCGTACGGTTTCCCATCAGCAAGCCCAGGGAGCACTGTGGGGGCATCCCGGAACCAGGGGTGCGCTCATTTGGATTCCTCAACAAGACGATGCATCTGTACGGCGCCTTTTGCTATAGGTA
>XM_039807294.1
GTATGGCAGCTGAACATTCAGGGCTCCGACAGAGGAGCCAACAGGGATGAACAGTTGCTTCCACTTTCCAAAGTTAGGAATAACCCAGGAATTCTTTGAAGGCATCGTCGTCATGTTGCACAACGGAGGAGGATGAGGGAACATCTGCGTCTTTTCAACTTCACAGGAGCTGGAGGAGTGACTCCCTTCATAATGAACTGTGCTGTGATTCTTCTATTAACATCGAGCTGCTTCACCTGGTCCTCAGCTATATATACCCCCAACAGGGCAGCACCCAAGAAGCTGAAGTACCTCCTGGAGCCGCCTGTTTACGCCGAGGTGGTTGCCCGAAGGGGAGAAAACGCCACCTTGCCGTGTATCCTGAGAACCAAACCCAGCCATTACAAAGTGAAATGGACCAAGCTGGAGTCAGAACACATAGGTCGGGAGAACATTATCATGATATCAAACGCACATGCCTTCAAGCCATACGGCCATCTTGGGCCGCGGGCTTCTCTTCGGAAGGCTCACACCATGGACGCCTCCCTGCAGCTCAGCCGCCTTGAGCTGGAAGATGGCGGCACGTACCGCTGCGAGCTCGTCAACGGCATCGAGGATGAGAGTGTTGCCATTACTTTGAGGATTGAAGGAGTGGTGTTTCCGTATCAGAGTAAAAATGGCCGCTACAAATTCACTTTCCATGAGGCTAAGGAGGTTTGTGCTGAGCAAGACGGCACATTAGCCTCATACATCCAGCTGTTCAGAGCGTGGACGGAGGGTCTGGACTGGTGCAATGCCGGTTGGCTCCGTGATGGGACCGTTCATTACCCCATTATTCATCCGCGGCCGGCCTGTGGAGGTGACCTGCTCCCCGGCATCCGCAGTTATGGGCCGAAGGATAAAATCAACGATCGGTTTGACGCTTTCTGCTTCACCTCGCAGACATCTGGCTCTGTCTCCTACATATCAGGCTCTTTCTCCTTCGAGCAGGCAGAACACGCATGCCAACGTCGGGGAGCTGAGTTGGCGTCGGTCGGCCAACTTTACTCTGCCTGGCGATTCCAAAACTACGACCAGTGTGACGGCGGATGGCTGAAGGACGGCAGCGTACGGTTTCCCATCAGCAAGCCCAGGGAGCACTGTGGGGGCATCCCGGAACCAGGGGTGCGCTCATTTGGATTCCTCAACAAGACGATGCATCTGTACGGCGCCTTTTGCTATAGAATCACTGCACCGCCGGCGTGTCCATTTAACACGAGACCAAACTGCTTCCTGCGAGCTTATACAAAGAAGCTAAAAATCTGAACTGTAAATAACACTGTTGGTTACGTTGGGGATACACTGGTTTATCTGTAAATTAATTAcatgtattttaatttattcaataaaGATATGTCCATAAATCAG

Function

symbol description
hapln2 Enables identical protein binding activity. Predicted to be involved in central nervous system development and skeletal system development. Predicted to act upstream of or within cell adhesion. Predicted to be located in extracellular region. Predicted to be active in extracellular matrix. Is expressed in otic placode; otic vesicle; and pharyngeal arch. Orthologous to human HAPLN2 (hyaluronan and proteoglycan link protein 2).

NR:

description
PREDICTED: hyaluronan and proteoglycan link protein 2

GO:

id name namespace
GO:0007155 cell adhesion biological_process
GO:0005540 hyaluronic acid binding molecular_function
GO:0042802 identical protein binding molecular_function

KEGG:

id description
K06851 HAPLN2; hyaluronan and proteoglycan link protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039807292.1 True 1483 mRNA 0.51 6 34952052 34964134
XM_039807293.1 False 1222 mRNA 0.54 6 34952052 34963856
XM_039807294.1 False 1386 mRNA 0.52 7 34952052 34964798

Neighbor

gene id symbol gene type direction distance location
nes NA coding upstream 329469 34609910 ~ 34622583 (+)
LOC120561733 NA coding upstream 510959 34419907 ~ 34441093 (+)
LOC120562692 NA coding upstream 863306 34084095 ~ 34088746 (+)
LOC120562646 NA coding upstream 1016109 33922578 ~ 33935943 (+)
LOC120562644 NA coding upstream 1032877 33916999 ~ 33919175 (+)
rrnad1 rrnad1 coding downstream 78423 35043221 ~ 35058363 (+)
LOC120563199 NA coding downstream 94661 35059459 ~ 35071390 (+)
snrnp48 snrnp48 coding downstream 154635 35119433 ~ 35127711 (+)
zgc:113232 LOC103366216 coding downstream 164316 35129114 ~ 35168180 (+)
cd83 NA coding downstream 212610 35177408 ~ 35183557 (+)
G78366 NA non-coding upstream 33983 34914357 ~ 34918069 (+)
G78219 NA non-coding upstream 293901 34634755 ~ 34658151 (+)
LOC120561766 NA non-coding upstream 446695 34502873 ~ 34505357 (+)
G78195 NA non-coding upstream 482595 34468906 ~ 34469457 (+)
LOC120561758 NA non-coding upstream 606659 34342514 ~ 34345393 (+)
G78440 NA non-coding downstream 66110 35030908 ~ 35031135 (+)
G78488 NA non-coding downstream 204114 35168912 ~ 35173203 (+)
G78516 NA non-coding downstream 242133 35206931 ~ 35207166 (+)
G78518 NA non-coding downstream 265653 35230451 ~ 35230899 (+)
G78519 NA non-coding downstream 267348 35232146 ~ 35232446 (+)
LOC120562567 NA other upstream 95520 34839157 ~ 34856532 (+)
G78200 NA other upstream 407673 34529355 ~ 34544379 (+)
sh3bp5b sh3bp5,LOC102783023 other upstream 909404 33990542 ~ 34042648 (+)
LOC120562157 NA other upstream 1047767 33894360 ~ 33904285 (+)
bmper bmper other upstream 1072920 33826087 ~ 33879132 (+)
G78594 NA other downstream 440577 35405375 ~ 35408682 (+)
LOC120562275 NA other downstream 778497 35743295 ~ 35773988 (+)
LOC120562279 NA other downstream 901044 35865842 ~ 35888172 (+)
G78759 NA other downstream 1146053 36110851 ~ 36190839 (+)
G78772 NA other downstream 1293362 36258160 ~ 36350995 (+)

Expression


Co-expression Network