slc6a3 (slc6a3)


Basic Information

Item Value
gene id slc6a3
gene name slc6a3
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 15657241 ~ 15675222 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039807297.1
GATCTCCATACCAGACCACAGGGTACTctgggctctgtgtgtgtgtcactggaGCCAAGGAGGtttcTCTAAACATTTTTGCTTCAATCTGGGTCCGATTCTAACTTATCCAGAACGGTCTGCATAAATATGGTCAGCATCAGTTTGCAGCGCACTGAACAACATCAGCACAACTGGAATTAAATTGTCCAAACTGACAACGGGAGAAGCTTTCACCTGTCATATTTCAGAGGCTGTGCACCCCTCCATGCTGACAGAGAGAGTCCCTGTCGGCCTGATGTCCTCTGTTGTAGCCCCAGAAAAGCCCACCTCCAACACCATGGGCCCCAAAGAGGTGGAGCTGATCCTGGTGAAGGAGCAGAATGGGGTTCAGTTCACCTCGACCACCATAGTGGCTCCTACTCAGACCAAACCCAGTGGGGAGGACGAAAGGGAGACCTGGGGGAAGAAAATCGACTTCCTCTTGTCTGTGATCGGATTTGCCGTGGACCTCGCCAACGTCTGGAGATTTCCCTACCTCTGCTACAAGAATGGAGGAGgtgcgttcCTGGTGCCATACCTGTTCTTCATGGTGATAGCAGGCATGCCTCTCTTCTACATGGAGCTGGCTCTGGGACAGTATAACAGAGAGGGGGCAGCAGGCGTCTGGAAGATCTGTCCCATATTTAAAGGTGTAGGCTTTACAGTGATCCTCATTTCCCTCTACGTTGGTTTCTACTACAATGTCATCATCTCCTGGGCGCTGTTCTACCTGTTCTCCTCATTCACCAGCGAGCTGCCGTGGGTCCACTGCAACAACACTTGGAACAGTCCTAACTGCTCCGACTGGGCTGACAACAGCTCAGTCAGTGATATTTACAAGGCCACCCCTGCTCAGGAGTACTTTGAACGACGGGTGCTCCACATCCAGGACAGTAATGGTATTGATAACCTGGGCCGCCCACGCTGGCAGTTGACTTCCTGTCTAGCTGTAGTGATTGTTCTGCTCTACTTCAGTCTGTGGAAGGGAGTCAAGACATCTGGAAAGGTTGTGTGGATCACAGCCACAATGCCCTATGTGGTCTTGACTGTGCTGCTGGTCCGCGGAGTCACCCTGCCTGGAGCCATCGATGGCATTAAGGCCTACCTCTCTGTCGACTTCCTGAGACTCTGTGATGCCAAGGTCTGGATTGAGGCAGCGACACAGATCTGTTTCTCTCTGGGAGTGGGGTTTGGTGTGCTAATTGCCTTTTCCAGCTACAACAAATTCAGCAACAACTGTTACAGAGACGCCATCATCACCAGCTCCATCAACTCTTTAACCAGTTTCTTCTCCGGCTTTGTGGTCTTCTCATTCCTTGGGTACATGTCCCACAAGCACAACGTAGACCTTGACAAAGTTGCAAGAGACGGTGCTGGTTTGGTGTTTGTCATTTACCCAGAAGCCATTGCAACATTACCTGGATCATCAGTGTGGGCGGTCATCTTTTTCATTATGCTGTTGACACTGGGAATTGACAGTGCTATGGGTGGGATGGAATCAGTGATCACGGGGCTGATTGATGAGTTTAAATGCCTCCACAAGCACAGAGAGCTGTTCACCCTCTTCATTGTTTCTGCCACCTTCCTCATATCCCTCTTCTGTGTTACAAATggtGGGATGTATGTGTTCACTCTGCTGGACCACTTTGCGGCAGGGACATCGATTCTCTTTGGAGTGCTTATTGAAGCCATTGGCATTGCATGGTTTTATGGAGTGGACCGATTCAGTGATGACATTGAAGAGATGATTGGTCAGCGACCAGGCATGTACTGGAGGCTGTGCTGGAAGTTTGTCAGCCCCTGCTTCCTCCTGtTTATGGTGGTGGTGAGCTTTGCCACGTTCAACCCTCCAAACTACGGCACCTACACGTTTCCTCCATGGGCTAACATGGTGGGGTGGTGTCTGGCTATTTCCTCAATGTCCATGGTGCCTCTATACGCCATCTACAAACTCTGCATACTGCCTGGGAAGTTTTGTGATAGACTGGCCTATGCCATCACCCCAGAGACAGAGCATCATTTGGTAGACAACGGGGAGGTTCGGCAGTTCACACTGCATCACTGGCTGGTGGTCTGAAAAGTACAGAgcaagagagataaagagactgaacgagtgtgtgtgtgagagagagagagagagagagagagagtatggaCTTTGGGTGTGAATGCATGCACAGCAAAGGTCTGAAGAaataggaagaaaaagaaatagtaaTTTGAGTCGATCAGGGTGGTGGTGGGAGGttaaaagtgctgaaaaaaatattgtagTGTGCTTTAATTTCAGCAGTGGGTGTGTGAAGCTGTGCATTGACCCTCTCCACCATTGTGTTGACATTAGTGAATGGGATTCAGTCAAACCTATAATGTGGTGTTCATACTGCTTCTGACATAAATACATAACTCTTTATGAATGGTAAAATGGGTTTTCTTTGAGGCAAGTAGGCGCAGTAAATAAGAATTGGTTTATTTTTATTGGGTGAAGATTTTGGACACAACATCTGAAAGAGTTAGTTTCCAAACTGCAGGATCTGTTTTTGGAAATAACTGTTTTCTTTAAGATCATTTGTATTTGTTCTatactttaattttattttcaatttgtCACTTTCAAAACAATATTAATGACAGTATTGGTTTTTTTTAGCGGTCAGTCATGATGACATGATGACATAATGCATGCCACAGGTTTCACTGAATCCCAGTCCATGTcttgtttattatatttattttatgtacttGCTCTTCTTAAAGACTGTTATAATACACAAAATCCCTGCAGACTTTTGTTTACACCAAAACAATGTACAGGAAAGAACAGCTGCTACATCAATAGACCAACATAACATCATCTGaataaactaaaacaaagtATGAAAAATCATTATGAGCTTTCTCACTGAGGATTCGTCAGTTACAAATCAGTACTGAGTTCAGTATTGattgtctgaaaataaaagtcaCTTCCTCTTACCGCTGTCCGCCTTTAGTCATGTTGGAAGGACCAACAGAAACATAATTTGACCAGTAGTGCAATTTTGTAGTGTTGTCAAGGGTTGGTTTATAGTAAGACTGTCCAACAAATTCCAACACATTGGTGAATACattctaaaaaataataaaactgaaCCTATCTACAGACCATTTGATTGTTAACTTTATCTTGCCGGGTCAATCTCTCTTCCCCATTATAACAAATCAGTGCCATTGcacatttcattttagtttaattGGACACTAGTTGTGTGTTTTTACACAAAGTTTTCCGGTGAAGATTTGAAAGCTATGACTGTCAAATTTCCAGAAAGCATCAAGCTTTAATGTTACTGTTTACATAATCGTATTAAGTGTTTCAAGACTGTTTGAAAGCTGCTTTGTATTGAGCTGCAAATGGATAGTGTGTAATGTAATATATGAAGTAATTTAAGTTATATATCTGTGTAAGTAAATGTAATGTAGAGGggcttgtattgtattgtactgtatgatattgaataACAAGAC

Function

symbol description
slc6a3 Predicted to enable symporter activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including dopaminergic neurons; forebrain; male organism; medulla oblongata; and retina. Human ortholog(s) of this gene implicated in attention deficit hyperactivity disorder; nicotine dependence; and obesity. Orthologous to human SLC6A3 (solute carrier family 6 member 3).

NR:

description
PREDICTED: sodium-dependent dopamine transporter

GO: NA

KEGG:

id description
K05036 SLC6A3, DAT; solute carrier family 6 (neurotransmitter transporter, dopamine) member 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039807297.1 True 3528 mRNA 0.44 17 15657241 15675222

Neighbor

gene id symbol gene type direction distance location
LOC120562533 lpcat1,LOC103360438,LOC100699650 coding upstream 4189 15619516 ~ 15653052 (+)
irx2a irx2,LOC102783739 coding upstream 243194 15408178 ~ 15414047 (+)
trnae-cuc_16 NA coding upstream 630588 15026582 ~ 15026653 (+)
dnah5 dnah5 coding upstream 783128 14762370 ~ 14874113 (+)
LOC120562066 NA coding upstream 952417 14703423 ~ 14704824 (+)
LOC120563110 dcdc2,LOC102296430,LOC102788673 coding downstream 7197 15682419 ~ 15707502 (+)
mboat1 mboat1 coding downstream 820504 16495726 ~ 16508741 (+)
LOC120562688 tnfrsf11b,LOC103369092 coding downstream 957654 16632876 ~ 16718524 (+)
LOC120562690 NA coding downstream 1046414 16721636 ~ 16724556 (+)
LOC120562939 NA coding downstream 1051126 16726348 ~ 16729348 (+)
G72680 NA non-coding upstream 67083 15589897 ~ 15590158 (+)
LOC120562980 NA non-coding upstream 493995 15100816 ~ 15163246 (+)
G72634 NA non-coding upstream 654107 15000671 ~ 15003134 (+)
LOC120562067 NA non-coding upstream 1011453 14644376 ~ 14645788 (+)
G72561 LOC103365327 non-coding upstream 1016473 14637870 ~ 14640768 (+)
G72704 NA non-coding downstream 161740 15836962 ~ 15844938 (+)
G72705 NA non-coding downstream 169088 15844310 ~ 15847320 (+)
LOC120562129 NA non-coding downstream 293955 15969177 ~ 16009134 (+)
G72775 NA non-coding downstream 499872 16175094 ~ 16181930 (+)
G72795 e2f3 non-coding downstream 805457 16480679 ~ 16481932 (+)
irx4a LOC103360443,LOC102233360,LOC103478376,LOC108232226,LOC101474805,LOC102784018,LOC102295185,LOC102202030,LOC104961814,LOC103145173 other upstream 96949 15553464 ~ 15560292 (+)
LOC120561718 LOC107101581 other upstream 1024520 14626478 ~ 14632721 (+)
G72506 NA other upstream 1231061 14425794 ~ 14426180 (+)
LOC120562174 rbms3,LOC101066789,LOC103370884 other upstream 1287150 14175817 ~ 14370091 (+)
cmc1 cmc1 other upstream 1512945 14133584 ~ 14144296 (+)
G72750 LOC104952694,LOC106925895 other downstream 343137 16018359 ~ 16072201 (+)
G73031 LOC103366415 other downstream 1774363 17449585 ~ 17452568 (+)
ubxn11 NA other downstream 1781421 17456643 ~ 17461118 (+)
G73123 phactr4 other downstream 1970291 17645513 ~ 17647186 (+)
paqr7b LOC107588505,LOC104938075,LOC103388542 other downstream 2075708 17750930 ~ 17779130 (+)

Expression


Co-expression Network