cers2b (cers2,LOC108241136,LOC102789054,LOC101467232,LOC102212238)


Basic Information

Item Value
gene id cers2b
gene name cers2,LOC108241136,LOC102789054,LOC101467232,LOC102212238
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 22589127 ~ 22606928 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039807301.1
ctcctccctctgtctgctcctctccctctctgctctcGTACCGGCCCTTCCTCCGCCTCTGCCCGGCCACAGACCCCGCCGACTCTCGGGGACACACTAGTGAGGAATTGTTTTTAGCTCGGACACGACGAGAttaagagagagatagagagagaagaaaaatatCGGGTCGCATTGCAGAATCTCGCACATTCTCCAATCTGtagacactttttttgttttttaatttatgttttaattaaGAGGAAAAATAAACTTTGTACGCCATGGAAATATGTAAAAATCATTCCGGATACTAAACTTGGACACAAACTGCGCCTTCTGAGCACAACCAGCGGGCTGGCAGACACTCAACAGGACCGTTAGGttattgctagctagctaggtgggACCTGGACGGCTTgtggaaaaaacattttttttatataattgcaAGCCGGATATCACTTTTCACTACGGGGGAAAACACCAAAGATGCTGTCTGGGCTGAGCGAGTGGTTCTGGCAGGAGCGGCTGTGGTTTCCAGAGGGCCTGGGCTGGGCTGACCTGGAGGATCGGGATGGACGAGTATACGCCAAAGCCCACGACTTGTGGGTGGCGCTGCCCATCGCCCTTGTATTCCTCATTGTCCGTCAGATCTTTGAAAGGACGGTGGCTACACCCCTGGCTTCTCTGCTCGGGGTGAAAGAAACAGTGCGGCTCAAAGTCCCTCACAATCCCACACTGGAGTCCTACTACTGTAACATTACCAAAAGTCCAACAGAGACTTCAATAGCAAGTCTTTGCAAGCAGACTGGCTATTCAGAAAGACAAGTGCAGCGATGGTTCAGGAGACGAAGGAACCAGGACAGACCGAGTTTGCTCAAAAAGTTTCGAGAGGCCAGTTGGAGATTTACGTTTTACCTTCTTGCTTTCATTGCTGGCCTGGCCGCCCTCATCGATAAACCTTGGCTTTATGATCTGAAAGAGATGTGGCAAGGCTTCCCTGTGCTGACTCTCCTGCCATCTCAGTATTGGTACTACATGATTGAGCTAGGTTTCTACAGCTCTCTGCTCTTCAGTGTGGCTTCTGACGTCAAACGCAAAGACTTCAAGGAGCAGATAGTTCACCATGTGGCGACCATCCTCCTCATCAGCTTCTCCTGGTGTGTTAATTACATCCGTGCTGGAACTCTCATCATGCTGGTTCATGACTCATCTGATTACTTCCTTGAGTCTGCAAAGATGTTCAACTATGCTGGGTGGCGAAATGCCTGTAACTACATCTTCATTGTATTTGCTGCAATCTTCATTATCACTCGGCTGGTCATCTTCCCCTTCtgGATTATTTACTGTACGTGGGTTTACCCAGTGACCATCTATGAACCCTTCTTTGGCTACTACTTTTTCAATGGACTTTTGATGACTCTGCAGTGTCTACATATCTTCTGGGCTATCCTCATCATACGCATAGCAATCCGCTTCCTCACCAATAATgaaaaagtTGACGATGAAAGGAGTGACAAAGAGGAAACAGATGAATCAGAAGAggagggggaagaggaggaTAAAAAGTACATGAAAAAAAATGGACCAGTGCAGAACGGTCACACAgtccacaacaacaaccaccgCAAGACAGAGTAAAAGTGTCAGGACGAAAGAATCTGAGAAGGACTCATATCCCTCTGTAGGGGAACAGGAgggagggatgaagagagagaaagaagagaggattGTGGTTTAGGGAGGGGCCAAGTCATCCCCTTTAAAGCAAGAACAGCAGGTATCCTGAGGAAGGATTTGACAGTTACTTTTGCACACCACAAACACTCATACATGTTCATTCGTACTATTAGAGGGCACAGAGATCCAGCAGATAATATACACTACATTAGGTGGCATGGCTTTTTTGCTTTGTCATTAGAGAAAAATTATCATTGTCAGTGTGTCAGTCCCAAAATTTTAATAAGGCAGGGAAGAAAATGGATGGAGGATGGGGGTGATGCTGCTTCTACTGCTTCTAGCTTTCCTTGTTCTTTGTGCCTTAGAGCCAGCTAATGGCTGGTAAAATGccatttttaaaaagctttCTGCTTTAATCTTGTGTTGCTTTATTTCGTTGCACCTTTTTGTTTTCtaataaaagaacaaaagagAGTGAAAGTGAGATAATAGGGCATTTAATCCCCTAATTTTTTCCTTGTCTATGCAATTATGTAAGTGTTGAGATATTGCAACGTCTTTGCACAAACACAGTGTCTCTTATATACTGTAATAACTTACAGTAGGACTGTGGCCTCTGGTCTCCAATGCAGCCCGTGCTATTTATAAATTTGCCTTGTTTAAGGTTTAAAGAGTAAATCTTgctttcttgttttaatttcgGTTCAATTCTTAATTCAGTATTGTACAATTCATTCTTCCAAAAGAGATGATCTCTGATCTGCAAAGGTCATCATTCTCAGTTCTTTGCTGTTTGAGCAGGCAGAAATACCCAAGTGCTTAGCACAAACACTGCAATATAAACCACTGCTTCCTGCTAGTTTTGACAAAGCTGAATGTTTTTCCTTTCTGGTTTGGCTAAAGCTGTTTGATACAGTTGAGTCTTGAATCACGCTGATGCTGCCACCTGCTAAAAACCAATGACTCAACAAAATCTTTGCGAAGTTGGGATGCTTTGTTGAAATAAAGGAGTTTTACTAAGTCGAATGGAATGGGACAGATTAACCAATTCCGGATTTCACAAATATGGGCCAGATTTCTTCAATTCACTGCCTTGTAGCCTGGGTTATGTTTGTTAACCTGGGTTAGAATTTTACGTGTTGATCTAAGTGAATGATTTTAGGTATGATTGTGTGTATAAAACGGgttttgatgttaaaaaaaatattgaaatcaaTTTTTAGCAATTTAGTGTTTGAGACTTATGAGGAATTCAAGAAATGAGTGTTGCAGTTTTGTTGTTATGCTTTAGAGTTGGTTGTATGTCAAGTGCCTTATCAGTAATGTATTGGAAGCTCTGTCCTGTCTTCATGTCCACTTGTTTTCTTTCCTGTCTCCACATGACAGATCTAATGCTAAGACTAGTATCTCCTACCTCCACTGTCTCATCCATCACTCCTCTTCTTCATAAATTACCTTCCTTTCAAACTCACCCTCATTCCACCACCACATTCTTTTTTACTAACCCAGACCAACCGGCAACCTCTCTTCCCCAGTGATACAGAAGAAACAGCTGTGTCCTAATTACAGTGTTATTTGTttcttattttgtatttttttttgttcaatgaTGCCTAAGTATTGttattaacaataaaaacaaagatcATGAATCACAA

Function

symbol description
cers2 Enables sphingosine N-acyltransferase activity. Involved in ceramide biosynthetic process. Located in endoplasmic reticulum.

NR:

description
PREDICTED: ceramide synthase 2-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K24621 CERS2_4, LASS2_4; very-long-chain ceramide synthase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039807301.1 True 3323 mRNA 0.43 11 22589127 22606928

Neighbor

gene id symbol gene type direction distance location
adamtsl4 LOC104944899,LOC101074756,LOC106573456 coding upstream 32835 22519118 ~ 22556292 (+)
tars2 NA coding upstream 82630 22490753 ~ 22506497 (+)
prpf3 prpf3 coding upstream 119345 22461131 ~ 22469782 (+)
LOC120562192 LOC104934671 coding upstream 133405 22448519 ~ 22455722 (+)
polr3c polr3c coding upstream 222974 22357791 ~ 22366153 (+)
LOC120561960 NA coding downstream 20419 22627347 ~ 22627532 (+)
setdb1b setdb1 coding downstream 22689 22629617 ~ 22643078 (+)
LOC120561656 NA coding downstream 36418 22643346 ~ 22651387 (+)
clk2b LOC104944907,LOC101465036,LOC102211389,LOC100710865,LOC102298503,LOC102787711 coding downstream 44710 22651638 ~ 22657098 (+)
LOC120562535 LOC103478110,LOC102236274,LOC103136813,LOC106922010,LOC106957061,LOC107088793 coding downstream 60988 22667916 ~ 22674134 (+)
G74769 NA non-coding upstream 333649 22255271 ~ 22255478 (+)
G74765 NA non-coding upstream 343364 22245489 ~ 22245763 (+)
G74764 NA non-coding upstream 346094 22242817 ~ 22243033 (+)
G74760 NA non-coding upstream 405090 22183783 ~ 22184037 (+)
G74737 NA non-coding upstream 459213 22129652 ~ 22129914 (+)
G75042 NA non-coding downstream 311824 22918752 ~ 22920103 (+)
G75045 NA non-coding downstream 317664 22924592 ~ 22925155 (+)
G75065 NA non-coding downstream 375964 22982892 ~ 22987322 (+)
G75069 NA non-coding downstream 387492 22994420 ~ 22994706 (+)
G75077 LOC104960445 non-coding downstream 409879 23016807 ~ 23018595 (+)
celf3b LOC104944900,LOC100708447,LOC107088821,LOC107379582 other upstream 3555 22559944 ~ 22585572 (+)
rprd2b NA other upstream 99183 22469978 ~ 22489944 (+)
rusc1 LOC104958857 other upstream 276607 22264939 ~ 22312520 (+)
fam189b fam189b,LOC102796117 other upstream 300833 22279556 ~ 22288294 (+)
kcnn3 kcnn3,LOC104958859,LOC106930148,LOC106962094 other upstream 340600 22197712 ~ 22248527 (+)
arnt NA other downstream 3090 22610018 ~ 22625953 (+)
LOC120562537 NA other downstream 53551 22660479 ~ 22667885 (+)
LOC120562539 LOC102295960,LOC100711672,LOC102209551,LOC101487210,LOC102786116 other downstream 82142 22689070 ~ 22705416 (+)
myh14 NA other downstream 178650 22785578 ~ 22820053 (+)
cnot3a cnot3 other downstream 293161 22900089 ~ 22911520 (+)

Expression


Co-expression Network