chrnb2 (chrnb2,LOC102780733,LOC104959165)


Basic Information

Item Value
gene id chrnb2
gene name chrnb2,LOC102780733,LOC104959165
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 21818053 ~ 21835351 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039807314.1
CTCTCCAGCGCGTCGCATCGCTGAGCGGTGTTCAGCACGGACAGCCAGCACCGCACGACCCAGCGCACAGCTTACCTGGCCCCGCCGAGGTATTTCTATTCTCCCCTTTTCGGGCGAAAAAGTGCGGACCGACGAAGAGACCTGAACTCACCATGCCAGGTAGAGAGTGAAAGGAGCTTTGGATCGTGAGGAGCAGTGGAGTAATACTGCGTGTGTGCTTGGGGTGGCCTCTCCATCGCGGTGAACACCTTTCGGGCTCGGAGCGCGCTCGGACGCACGTATGATGATGGACGGCTggccgccgctgctgctgctggctctcCTCGCCATTGCGGGAGGCGGCCTCGGGGCAGACACAGAGGAGCGGTTGGTGGAGCATCTCTTGAACCCTGCCCACTACAACAAACTGATCCGTCCTGCGACGAATGGCTCCGAGCTGGTTACCGTGCAGCTGATGGTGTCGTTGGCCCAGCTCATCAGTGTGCATGAAAGAGAGCAGGTTATGACCACCAATGTCTGGCTAACACAGGAGTGGCAGGACTATCGTCTGACTTGGGTCCCTGAGGAGTTTGATGGGATGTTGAAGGTCAGGCTACCCTCAAAACACATATGGCTGCCTGACGTGGTGCTCTACAACAATGCTGATGGGGTGTACGAGGTGTCATTCTACTCTAACGCGGTGGTCTCCTACGACGGCAGTATCTTCTGGTTGCCCCCAGCCATCTACAAGTCAGCCTGTAAGATCGAAGTCAAGCACTTCCCCTTTGACCAGCAGAACTGCACGCTGCGCTTCCGCTCCTGGACCTACGACCGCACCGAGATCGATCTGGTGCTCCGCGCTGACGTGGCCAGCATGGACGACTTCACGCCCAGCGGTGAGTGGGACATCATCGCCCTGCCAGGCAGACGAAACGAGAACCCAGCTGACCCCACCTACGTGGACATCACGTACGACTTTATCATTCGCAGGAAGCCTCTTTTTTACACCATCAACCTCATCATCCCGTGCGTGCTCATCACCTCGCTGGCAATCCTGGTCTTCTACCTGCCCTCTGACTGTGGAGAGAAGATGACGCTCTGCATCTCCGTGCTGCTGGCTCTCACTGTGTTCCTGCTGCTGATCTCCAAGATCGTCCCACCCACTTCACTAGACGTCCCTCTCGTGGGGAAGTACCTGATGTTCACCATGGTCCTGGTCACTTTCTCTATCgtcaccagtgtgtgtgtgctgaatgTACACCACCGCTcgcccaccacacacaccatgcCCCCTTGGGTTAAACTGGTGTTCCTCAACAAGCTTCCGGCCTTGCTCTTCATGCGCCAGCCCAGGAACAGCTGCGAGCGCCAGCGCCTGCGCCAAAGAAGGAGGGCCCAAGAGCAGAAGGAGGGTGGGCGCAGCGGGGAGGCGGGGGCCTTGATGGTGGGGCTCGGGCTGGGCGGCGCTGGCGGGAACGGAGGGGGAACCTCCACAGGGGTGTTCAGCAAGGAAGACAATGACCCTTGTACCTGCTATGTGAACCGGGCGTCTGTTAAACAGTTTGGAGGGGATCTGGGAGGTGCAGGAGGGGGATCCATGGATGGTCTAAACAGGGTGAGGGAGGGCCGGGAAGGGGGCTCTGGAAACCTGCCGCGGGGGAAGCAAGCAGCAGGAGGTCCTGCTCTGACTCAGGCCCTGCTGGCTCAAGCCTGTCCGGGCTTTGAGGAGGCTGTGGAAGGAGTACGCTTCATTGCTAACCACATGAAGAGTGAGGATGATGATCAAAGTGTGAGCGAAGACTGGAAGTACGTTGCCATGGTGATCGACCGTCTCTTCCTGTggatctttgtgtttgtgtgcgtgtccgGCACATTAGGCATGTTCATGCAGCCGCTTTTCCAGAATTACACAGTCAAGACCATCACCAGCTCGCCAGGCTGACCATTGCCAGGCCGAGAACATGCTGAACTGACAGCTCCCCTCCGACCAATCAGCACAGCAGGACAAGAGCCGGAGGTggg
>XM_039807315.1
TGCAGTCTGCTACAGATGGAGGGATGGCggacagGCGGCCTCGGGGCAGACACAGAGGAGCGGTTGGTGGAGCATCTCTTGAACCCTGCCCACTACAACAAACTGATCCGTCCTGCGACGAATGGCTCCGAGCTGGTTACCGTGCAGCTGATGGTGTCGTTGGCCCAGCTCATCAGTGTGCATGAAAGAGAGCAGGTTATGACCACCAATGTCTGGCTAACACAGGAGTGGCAGGACTATCGTCTGACTTGGGTCCCTGAGGAGTTTGATGGGATGTTGAAGGTCAGGCTACCCTCAAAACACATATGGCTGCCTGACGTGGTGCTCTACAACAATGCTGATGGGGTGTACGAGGTGTCATTCTACTCTAACGCGGTGGTCTCCTACGACGGCAGTATCTTCTGGTTGCCCCCAGCCATCTACAAGTCAGCCTGTAAGATCGAAGTCAAGCACTTCCCCTTTGACCAGCAGAACTGCACGCTGCGCTTCCGCTCCTGGACCTACGACCGCACCGAGATCGATCTGGTGCTCCGCGCTGACGTGGCCAGCATGGACGACTTCACGCCCAGCGGTGAGTGGGACATCATCGCCCTGCCAGGCAGACGAAACGAGAACCCAGCTGACCCCACCTACGTGGACATCACGTACGACTTTATCATTCGCAGGAAGCCTCTTTTTTACACCATCAACCTCATCATCCCGTGCGTGCTCATCACCTCGCTGGCAATCCTGGTCTTCTACCTGCCCTCTGACTGTGGAGAGAAGATGACGCTCTGCATCTCCGTGCTGCTGGCTCTCACTGTGTTCCTGCTGCTGATCTCCAAGATCGTCCCACCCACTTCACTAGACGTCCCTCTCGTGGGGAAGTACCTGATGTTCACCATGGTCCTGGTCACTTTCTCTATCgtcaccagtgtgtgtgtgctgaatgTACACCACCGCTcgcccaccacacacaccatgcCCCCTTGGGTTAAACTGGTGTTCCTCAACAAGCTTCCGGCCTTGCTCTTCATGCGCCAGCCCAGGAACAGCTGCGAGCGCCAGCGCCTGCGCCAAAGAAGGAGGGCCCAAGAGCAGAAGGAGGGTGGGCGCAGCGGGGAGGCGGGGGCCTTGATGGTGGGGCTCGGGCTGGGCGGCGCTGGCGGGAACGGAGGGGGAACCTCCACAGGGGTGTTCAGCAAGGAAGACAATGACCCTTGTACCTGCTATGTGAACCGGGCGTCTGTTAAACAGTTTGGAGGGGATCTGGGAGGTGCAGGAGGGGGATCCATGGATGGTCTAAACAGGGTGAGGGAGGGCCGGGAAGGGGGCTCTGGAAACCTGCCGCGGGGGAAGCAAGCAGCAGGAGGTCCTGCTCTGACTCAGGCCCTGCTGGCTCAAGCCTGTCCGGGCTTTGAGGAGGCTGTGGAAGGAGTACGCTTCATTGCTAACCACATGAAGAGTGAGGATGATGATCAAAGTGTGAGCGAAGACTGGAAGTACGTTGCCATGGTGATCGACCGTCTCTTCCTGTggatctttgtgtttgtgtgcgtgtccgGCACATTAGGCATGTTCATGCAGCCGCTTTTCCAGAATTACACAGTCAAGACCATCACCAGCTCGCCAGGCTGACCATTGCCAGGCCGAGAACATGCTGAACTGACAGCTCCCCTCCGACCAATCAGCACAGCAGGACAAGAGCCGGAGGTggg

Function

symbol description
chrnb2 Predicted to enable neurotransmitter receptor activity. Predicted to be involved in several processes, including chemical synaptic transmission; ion transmembrane transport; and regulation of membrane potential. Predicted to act upstream of or within ion transport. Predicted to be located in postsynaptic membrane. Predicted to be integral component of membrane. Predicted to be active in neuron projection and synapse. Predicted to be integral component of plasma membrane. Human ortholog(s) of this gene implicated in autosomal dominant nocturnal frontal lobe epilepsy and autosomal dominant nocturnal frontal lobe epilepsy 3. Orthologous to human CHRNB2 (cholinergic receptor nicotinic beta 2 subunit).

NR:

description
neuronal acetylcholine receptor subunit beta-2-like

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0006812 cation transport biological_process
GO:0045211 postsynaptic membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K04813 CHRNB2; nicotinic acetylcholine receptor beta-2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039807314.1 True 2001 mRNA 0.58 6 21818053 21835351
XM_039807315.1 False 1697 mRNA 0.58 6 21826626 21835351

Neighbor

gene id symbol gene type direction distance location
c7h1orf43 LOC104934460,LOC104959162,LOC103388199 coding upstream 50200 21764475 ~ 21767853 (+)
znf687a NA coding upstream 139195 21668490 ~ 21678858 (+)
LOC120563136 LOC103361607,LOC104959159 coding upstream 150222 21661202 ~ 21667831 (+)
LOC120561789 LOC103361609,LOC102785646,LOC102208248,LOC101464829,LOC100701476,LOC103478143,LOC106937891,LOC106916277 coding upstream 159523 21639092 ~ 21658530 (+)
LOC120561791 NA coding upstream 179313 21628731 ~ 21638740 (+)
flad1 flad1,LOC102778463 coding downstream 55178 21890529 ~ 21900652 (+)
efna3b efna3,LOC105928532,LOC103478166,LOC103140801,LOC102234981 coding downstream 139841 21975192 ~ 22033267 (+)
efna1b efna1,LOC104918192 coding downstream 233655 22069006 ~ 22080302 (+)
LOC120562069 tmem107 coding downstream 272592 22107943 ~ 22110135 (+)
krtcap2 krtcap2 coding downstream 275165 22110516 ~ 22113062 (+)
LOC120562851 NA non-coding upstream 92348 21724948 ~ 21725705 (+)
G74288 NA non-coding upstream 525673 21291042 ~ 21292380 (+)
G74287 NA non-coding upstream 527739 21289553 ~ 21290314 (+)
G74286 NA non-coding upstream 528678 21289171 ~ 21289375 (+)
G74274 kiaa1429,LOC104941925 non-coding upstream 574486 21243229 ~ 21243567 (+)
G74673 NA non-coding downstream 200927 22036278 ~ 22036659 (+)
G74729 NA non-coding downstream 280265 22115616 ~ 22116026 (+)
G74732 NA non-coding downstream 284387 22119738 ~ 22121346 (+)
G74737 NA non-coding downstream 294301 22129652 ~ 22129914 (+)
G74760 NA non-coding downstream 348432 22183783 ~ 22184037 (+)
G74633 tuft1,LOC102781808 other upstream 47767 21769548 ~ 21770286 (+)
them4 LOC106592246,LOC104959154,LOC101466288,LOC107096308,LOC100702377,LOC105029233,LOC106575342 other upstream 214595 21599034 ~ 21603458 (+)
crot acbd7,crot,LOC102783617,LOC101470173 other upstream 402159 21403035 ~ 21415894 (+)
LOC120563169 NA other upstream 481388 21331412 ~ 21336665 (+)
sec61b sec61b,LOC102796100 other upstream 806639 21008013 ~ 21011414 (+)
slc50a1 slc50a1 other downstream 248318 22083669 ~ 22091963 (+)
LOC120561539 NA other downstream 297227 22132578 ~ 22136234 (+)
LOC120561537 NA other downstream 302196 22137547 ~ 22139223 (+)
snx27b snx27,LOC102196713,LOC102288812 other downstream 304429 22139780 ~ 22154684 (+)
kcnn3 kcnn3,LOC104958859,LOC106930148,LOC106962094 other downstream 362361 22197712 ~ 22248527 (+)

Expression


Co-expression Network