rrnad1 (rrnad1)


Basic Information

Item Value
gene id rrnad1
gene name rrnad1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 35043221 ~ 35058363 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039807365.1
GCGATACTATCTATTATAATGACTTAAAGGATCTGTTTTAACAACATTGGCGGAAATGGGCATCCATACCTGAATTAAACACACAATTTCTGCCATTTACTCGCCGCAGCCAGTCAACAAAAACATATCCATAAAACAACCACTAGCTAAATCAGAGACAGCTTAGAGAACCTTTGACTTAAGACGATATCGCTACCTTCTTAATTTGTGGTAATTGATTGAATGTTGATTTTACGAATATCGATTGTAAAGTCCGGGATCCGACCTACCGATGCGGAATTTACGTGAAGCACCTGAACGCACTCTAGCTGCATGTGAAAGCAActagctggctagctagctattgGCTAACTACAATTAACATTTGTGAAATGAAAAGCACGGGACTTTAAGTTACGTTACTGTGCGGGTTAGAACGTATTTTAGACACACTTCCGTGGTTTTAACTGGGAAAATAACTTTGCGTTTACAAGCTAACGTATGTTACCATTAGCTCATCTCCAAGTTCTATGTCAGTGaaactgctagctagctagcagcaaAGGCTTTGGAGATGTTTACATCCAGCCTTTCTACACAACAACAGAGGGACCTGGCGAAAAGACTCACCACTTTCCTGTCTCAGTACAGCCACGTATCCGACTCCTATATCATTGAGTTCTTCACTGAAGATCTCTGGCACACATTACCCAACACCTGGCAGCCTATGCTGCAGGACCTGTCGTATCCACAGATCGCAGACCTGTTACTGGATGCTGCACACAGAGACAAGAGATACCCTTCGGTGTGGCCTCTGTCGCTCTTGGCGTTCCGTGCCACAGCTCACGCTCTGGCGTTTCCCAGAGAGTGCAGGCGGGGGCGAGGCACGGCGGCCGGCTCGGAGAAGCCTGAGGAGTTCCTGCACAACCAAAGTCAGAGCGCCCTGCTGGGACACATATTCAGGAAACACGTCAAACCCAAGAAACAGCACGAGATCCGCAAGCTGGGCTCGCTGGTAAAACAACTTTGTGACCAGACTGACTGCAACAGTGTGGTGGATGTGGGCTCTGGACAGGGTCATCTGACTCGTTTCCTGTCCTTTGGGCTCGGACTGTCTGTGACCGCTATTGAGGCTGATCACACCCTGGTTGCTATGGCGTCCAAGTTTGATGGACAGTTACTGTGGGCCTTGGAGAAGGAAAGGCAGAAAAAGAACTGCTCCTCTCTGGTCCCGGTGTCACAGTCCTCTCCCCGCCATGTGGCCGGTTGGGTAAACCCCAGGGCATCATGGGAGGCCTTCATCAAGCAGCTGAGTGTTTCAGATTGTGTCGACGATGGTCTCCCAACTCCGTCTGGACCCAGCAAAAAGAGACTGCGGGGCTGTGAGCTTCAGGGGGCCTCTCACGTGGTCCAGACGCCGTCATGTCGTGTTTGCACGGACTCTGAAAGTCGCTCGCAGGACTCTGAATCGCCATCGCAACGCCAGTTAAGCAAAAGCGAGTCTGAAGAGGAGCCTTCTGCAGAAAAACACTGCTCGTGTGGAGAAAACAGCCAGCGGCATCAAGACTTTGTCCTCACCGGTCTCCACGCGTGCGGCGACCTCAGCGCCACACTCCTGCGCCACTTTGTCAGCTGCCCATACGTCCGCGGCATCACCTCGGTGGCGTGTTGCTACATGAAAATCACGACCAAAGAAAACCCCGCCCCTCCGGGATTGGTCGCAGCTCCGCAGACACCCGGCCGGGAAGCGCTCCCCTCAGAGTTCGGCTACCCGATGAGCTCCTGGGTTGGGGGGCTGCCGGGACACCAGCTGTCCTATAAGGCGAGGGAGGGCGCGTGTCACGCCGCTGAGGACTATAAACGGAGGCTTCGGGAGGAAAGCGAGCTGCTGAGGACACACTGTTACCGGGCGACGCTGGAGACGATCATCAGGGAAACGAGGCCAGATCTACGCAGGGCAGGAATCCAGACCATAAAGAAAGCCCACTTACTACCGTTTACAGAGTACGCCCGTCTGGGTCTGGCTCGGGTCGGCCTGCCTCCCGGGTTGCCTCTGGCCCCGCAGCGGGTGGAGGCCATGTTGAAGCAGCAGCGCAGGGTGGTGGTGTACTTCAGCCTGGCCCTGCTGCTGGCTCCTGTGGTGGAGACGCTGGTGCTGCTGGACCGGATGATCTACCTGCAGGAGAACGGCGTGGACAGTCAGCTGGTTCCTCTCTTTGACCCGAACTTTTCTCCAAGAAACTTTGTGCTGGTGGCTCTGAAGGCGCGTGGACAAGGAGGAGGCAAATGGGAAAAGTCAAACGATATTTGTCACTCTTTGGTGAGAAAAGTAACTTAAATTCCACAAGACGAGGCTGCGCTGCGCGCCCCAGAAGCAACTCTCTGCTCCGCAAAAAATGCTGCATGGCGGACAACGAGACAAAACCGGAACGCGGTGCATCTGCgcccggtggaatttccgggttacacttccttttttaaaatgaaatatgacTCAAGATTCTCTTACAAAACAAGGGATCCCAAGTCTTAAGGTCATTTGCTTTTATTCTCCGTTTTTAGAGATATTAAAGAATGAACATTAAA
>XM_039807366.1
TTTGAGAACTGCTGTATGGAAAGGATCCTCCAGCTGTCTGGTGAGTTCTTCACTGAAGATCTCTGGCACACATTACCCAACACCTGGCAGCCTATGCTGCAGGACCTGTCGTATCCACAGATCGCAGACCTGTTACTGGATGCTGCACACAGAGACAAGAGATACCCTTCGGTGTGGCCTCTGTCGCTCTTGGCGTTCCGTGCCACAGCTCACGCTCTGGCGTTTCCCAGAGAGTGCAGGCGGGGGCGAGGCACGGCGGCCGGCTCGGAGAAGCCTGAGGAGTTCCTGCACAACCAAAGTCAGAGCGCCCTGCTGGGACACATATTCAGGAAACACGTCAAACCCAAGAAACAGCACGAGATCCGCAAGCTGGGCTCGCTGGTAAAACAACTTTGTGACCAGACTGACTGCAACAGTGTGGTGGATGTGGGCTCTGGACAGGGTCATCTGACTCGTTTCCTGTCCTTTGGGCTCGGACTGTCTGTGACCGCTATTGAGGCTGATCACACCCTGGTTGCTATGGCGTCCAAGTTTGATGGACAGTTACTGTGGGCCTTGGAGAAGGAAAGGCAGAAAAAGAACTGCTCCTCTCTGGTCCCGGTGTCACAGTCCTCTCCCCGCCATGTGGCCGGTTGGGTAAACCCCAGGGCATCATGGGAGGCCTTCATCAAGCAGCTGAGTGTTTCAGATTGTGTCGACGATGGTCTCCCAACTCCGTCTGGACCCAGCAAAAAGAGACTGCGGGGCTGTGAGCTTCAGGGGGCCTCTCACGTGGTCCAGACGCCGTCATGTCGTGTTTGCACGGACTCTGAAAGTCGCTCGCAGGACTCTGAATCGCCATCGCAACGCCAGTTAAGCAAAAGCGAGTCTGAAGAGGAGCCTTCTGCAGAAAAACACTGCTCGTGTGGAGAAAACAGCCAGCGGCATCAAGACTTTGTCCTCACCGGTCTCCACGCGTGCGGCGACCTCAGCGCCACACTCCTGCGCCACTTTGTCAGCTGCCCATACGTCCGCGGCATCACCTCGGTGGCGTGTTGCTACATGAAAATCACGACCAAAGAAAACCCCGCCCCTCCGGGATTGGTCGCAGCTCCGCAGACACCCGGCCGGGAAGCGCTCCCCTCAGAGTTCGGCTACCCGATGAGCTCCTGGGTTGGGGGGCTGCCGGGACACCAGCTGTCCTATAAGGCGAGGGAGGGCGCGTGTCACGCCGCTGAGGACTATAAACGGAGGCTTCGGGAGGAAAGCGAGCTGCTGAGGACACACTGTTACCGGGCGACGCTGGAGACGATCATCAGGGAAACGAGGCCAGATCTACGCAGGGCAGGAATCCAGACCATAAAGAAAGCCCACTTACTACCGTTTACAGAGTACGCCCGTCTGGGTCTGGCTCGGGTCGGCCTGCCTCCCGGGTTGCCTCTGGCCCCGCAGCGGGTGGAGGCCATGTTGAAGCAGCAGCGCAGGGTGGTGGTGTACTTCAGCCTGGCCCTGCTGCTGGCTCCTGTGGTGGAGACGCTGGTGCTGCTGGACCGGATGATCTACCTGCAGGAGAACGGCGTGGACAGTCAGCTGGTTCCTCTCTTTGACCCGAACTTTTCTCCAAGAAACTTTGTGCTGGTGGCTCTGAAGGCGCGTGGACAAGGAGGAGGCAAATGGGAAAAGTCAAACGATATTTGTCACTCTTTGGTGAGAAAAGTAACTTAAATTCCACAAGACGAGGCTGCGCTGCGCGCCCCAGAAGCAACTCTCTGCTCCGCAAAAAATGCTGCATGGCGGACAACGAGACAAAACCGGAACGCGGTGCATCTGCgcccggtggaatttccgggttacacttccttttttaaaatgaaatatgacTCAAGATTCTCTTACAAAACAAGGGATCCCAAGTCTTAAGGTCATTTGCTTTTATTCTCCGTTTTTAGAGATATTAAAGAATGAACATTAAA

Function

symbol description
rrnad1 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human METTL25B (methyltransferase like 25B).

NR:

description
protein RRNAD1-like isoform X2

GO:

id name namespace
GO:0001510 RNA methylation biological_process
GO:0000154 rRNA modification biological_process
GO:0008649 rRNA methyltransferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039807365.1 True 2565 mRNA 0.52 8 35043221 35058363
XM_039807366.1 False 1952 mRNA 0.56 8 35045302 35058363

Neighbor

gene id symbol gene type direction distance location
hapln2 hapln2,LOC102779935 coding upstream 78423 34952052 ~ 34964798 (+)
nes NA coding upstream 420638 34609910 ~ 34622583 (+)
LOC120561733 NA coding upstream 602128 34419907 ~ 34441093 (+)
LOC120562692 NA coding upstream 954475 34084095 ~ 34088746 (+)
LOC120562646 NA coding upstream 1107278 33922578 ~ 33935943 (+)
LOC120563199 NA coding downstream 1096 35059459 ~ 35071390 (+)
snrnp48 snrnp48 coding downstream 61070 35119433 ~ 35127711 (+)
zgc:113232 LOC103366216 coding downstream 70751 35129114 ~ 35168180 (+)
cd83 NA coding downstream 119045 35177408 ~ 35183557 (+)
trnas-aga_7 NA coding downstream 129755 35188118 ~ 35188199 (+)
G78440 NA non-coding upstream 12086 35030908 ~ 35031135 (+)
G78366 NA non-coding upstream 125152 34914357 ~ 34918069 (+)
G78219 NA non-coding upstream 385070 34634755 ~ 34658151 (+)
LOC120561766 NA non-coding upstream 537864 34502873 ~ 34505357 (+)
G78195 NA non-coding upstream 573764 34468906 ~ 34469457 (+)
G78488 NA non-coding downstream 110549 35168912 ~ 35173203 (+)
G78516 NA non-coding downstream 148568 35206931 ~ 35207166 (+)
G78518 NA non-coding downstream 172088 35230451 ~ 35230899 (+)
G78519 NA non-coding downstream 173783 35232146 ~ 35232446 (+)
G78524 NA non-coding downstream 181674 35240037 ~ 35240487 (+)
LOC120562567 NA other upstream 186689 34839157 ~ 34856532 (+)
G78200 NA other upstream 498842 34529355 ~ 34544379 (+)
sh3bp5b sh3bp5,LOC102783023 other upstream 1000573 33990542 ~ 34042648 (+)
LOC120562157 NA other upstream 1138936 33894360 ~ 33904285 (+)
bmper bmper other upstream 1164089 33826087 ~ 33879132 (+)
G78594 NA other downstream 347012 35405375 ~ 35408682 (+)
LOC120562275 NA other downstream 684932 35743295 ~ 35773988 (+)
LOC120562279 NA other downstream 807479 35865842 ~ 35888172 (+)
G78759 NA other downstream 1052488 36110851 ~ 36190839 (+)
G78772 NA other downstream 1199797 36258160 ~ 36350995 (+)

Expression


Co-expression Network