LOC120561935


Basic Information

Item Value
gene id LOC120561935
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 33583805 ~ 33588092 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005639668.1
GCTTTAGAGAGAAATGAATGTCACTAATCTTGTTATGTGACTCTCTACCCTTTTTAGTCCCTAGCGTGGTGTTTTGCGGTGGTGTGGTCCAGCTGCTGGATTGGTAGAGTGTTTATTCCATCAGGACTGTGTtagctgtgtgtttctgttgccCACAGATGTACCGGAACACGCCACCAAGCTGCAGCGCCTGTCACAGAGCAGGACCAAACTGAGGCTCAGTCCTTGGAAGTGAAGAAGCTTTTTGAGGAATACAACAAAATGATGTTCCTGCTGTCCAAGCAGTTCACCCAATGGGATGAGACCCTGAGGAAGCTGGAGGAGGCCAAGGGCATTCGGCCCGTGGAGTAGCTCCTGTCAACATACGGATGAGGATGGTggtgatgaagaagaagaagaagactgtgGTGGGAGCTTTAGATGAGACGTGTGTTCCATGTGTTGCTTGTTCTTCTACAATAAATCCGAACAAAAGTGAGACAAAAGGATCGCAACATCTCACTCGCATGTTTAACTGCTTATCAGTTTTGCCAACATTGAGTTGAATCAGGTGATGTAACATCGATACCTTAATTGCCCCCCACTCCATGATATTGTTGGTTCTCAACAATTCTCAAAACCAACCTTATTTAATAAAATCATCACTAGGAATGGAGCAAATGTAAAAGAACTCGGTCTTGTGTGACTGTTCATCAGTCGTCTGGAGGAACTCGCCGCCCATCACGTGGCGTGTGGTTCAGACATCTCGGAGATgctgctgttatttattttctgacaaTAGAGCATTTTATGTTTGCAAAAAATCAACTCAACTTTCCAACACTGCCTCCCTACTGCAGGACAGTCACAATACTTGTTGTTCTGCCCTTTACAcatgttctctctctcacacacacacacacacacacacacacacagatatcctCTTCAAGGCTTTAGATTTTCTCTCTGGATGCCTTCTGAAATGATTTCTAAAAACTTCAATTAGCTTAATTATTCTTTCCTATATTCTGGATTTAAAATGTTCTATATGTCTCCTTTCATACAGCATGACTGCTGTTAACACAataaatattacttttttctttca

Function

GO: NA

KEGG:

id description
ko00190 Oxidative phosphorylation

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005639668.1 True 1090 lncRNA 0.43 3 33583805 33588092

Neighbor

gene id symbol gene type direction distance location
dctn3 dctn3,LOC102785116 coding upstream 17528 33557251 ~ 33566277 (+)
prdm1a prdm1,LOC103362578,LOC100706221 coding upstream 94131 33473172 ~ 33489674 (+)
s100a1 s100a1,LOC105028680,LOC106605324,LOC107587912,LOC107689908,LOC107663298,LOC107598020,LOC108272706,LOC108441918 coding upstream 297459 33283047 ~ 33286346 (+)
tlr18 LOC103362575 coding upstream 305288 33263730 ~ 33278517 (+)
si:ch211-113g11.6 LOC103362574,LOC103388694,LOC108243248 coding upstream 322888 33206707 ~ 33260917 (+)
nt5c3a nt5c3a coding downstream 17754 33605846 ~ 33628945 (+)
trnap-agg_3 NA coding downstream 37839 33625931 ~ 33626002 (+)
trnap-agg_4 NA coding downstream 42947 33631039 ~ 33631110 (+)
trnap-agg_5 NA coding downstream 43550 33631642 ~ 33631713 (+)
bbs9 bbs9,LOC102784155 coding downstream 44549 33632641 ~ 33822829 (+)
G78002 NA non-coding upstream 65290 33515709 ~ 33518515 (+)
G78001 NA non-coding upstream 90145 33493424 ~ 33493660 (+)
G77993 NA non-coding upstream 123570 33460022 ~ 33460235 (+)
G77991 NA non-coding upstream 258785 33324604 ~ 33325020 (+)
G77986 NA non-coding upstream 284263 33296251 ~ 33299542 (+)
G78052 NA non-coding downstream 334901 33922993 ~ 33923230 (+)
G78054 NA non-coding downstream 350167 33938259 ~ 33938468 (+)
G78055 NA non-coding downstream 362681 33950773 ~ 33951005 (+)
G78117 NA non-coding downstream 374702 33962794 ~ 33963092 (+)
LOC120561795 NA non-coding downstream 396757 33984849 ~ 33987987 (+)
G77888 NA other upstream 482271 33100413 ~ 33101534 (+)
LOC120561717 NA other upstream 1162333 32405133 ~ 32421472 (+)
G77682 tbx20 other upstream 1603896 31976318 ~ 31979909 (+)
G77447 NA other upstream 2447659 31134829 ~ 31136146 (+)
rab5ab rab5a,LOC104947906,LOC103388351,LOC105936747,LOC100704868,LOC101078239,LOC104931780 other upstream 2852196 30687338 ~ 30731609 (+)
bmper bmper other downstream 237995 33826087 ~ 33879132 (+)
LOC120562157 NA other downstream 306268 33894360 ~ 33904285 (+)
sh3bp5b sh3bp5,LOC102783023 other downstream 402450 33990542 ~ 34042648 (+)
G78200 NA other downstream 941263 34529355 ~ 34544379 (+)
LOC120562567 NA other downstream 1251065 34839157 ~ 34856532 (+)

Expression


Co-expression Network