LOC120561968


Basic Information

Item Value
gene id LOC120561968
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 23631416 ~ 23633834 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005639669.1
ATGTACAAACCACCACATTACTGCCCTCCTCTGGAGAAACTGCAAATCATGTGTAACCTTCTTATATGAtgacctttatttatttattctactCCGTCTTCTTCTTTGAATTTATTAGCGGTTGGCAAGGCAACGTGTTGGCGCAATACCGCCACCTAGTGGACTGGAGTGCAGAGCAGGACAGTGCAGCACAAGTTAAAgACACCCCCCGTGTAGCCTCAGAAGATGGGAGAACAGACAGAGATGGATCCCCCATCATGCACTGGGAACGGGTCGAGAGTTCAGCCTGCAGGCTCTCCAGGAGCAACGAACGAGTGCGGAGCTTGGTAAGAGGGACAGGAGAGCACACATGGCAGAGAGAAATCAGAGAACAAGCTTGGATATTTACGAATAAAGAGCATAAATAAAGACTTTTTTCCCCTCTA

Function

GO: NA

KEGG:

id description
ko04610 Complement and coagulation cascades

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005639669.1 True 425 lncRNA 0.47 2 23631416 23633834

Neighbor

gene id symbol gene type direction distance location
phc1 phc1 coding upstream 22920 23601102 ~ 23608496 (+)
m6pr NA coding upstream 31414 23593861 ~ 23600002 (+)
ephb6 ephb6,LOC102800023,LOC104960407 coding upstream 74933 23512555 ~ 23556483 (+)
slc2a3b LOC104960409,LOC101465952,LOC102775578,LOC101063282 coding upstream 122751 23498789 ~ 23508665 (+)
mfap5 mfap5,LOC104934636,LOC104960418,LOC107082259,LOC105934952 coding upstream 194372 23433649 ~ 23437044 (+)
clcn1b clcn1,LOC102795222 coding downstream 18734 23652568 ~ 23684905 (+)
zyx zyx,LOC102794270 coding downstream 86027 23719861 ~ 23736431 (+)
kel NA coding downstream 103144 23736978 ~ 23742258 (+)
LOC120561911 NA coding downstream 108533 23742367 ~ 23746558 (+)
nop2 nop2,LOC102793100 coding downstream 116111 23749945 ~ 23757019 (+)
G75301 NA non-coding upstream 136939 23494213 ~ 23494477 (+)
G75227 NA non-coding upstream 190190 23437096 ~ 23441226 (+)
G75199 LOC103372680 non-coding upstream 277241 23351145 ~ 23354175 (+)
G75197 NA non-coding upstream 280649 23346840 ~ 23350767 (+)
G75196 u2af2 non-coding upstream 288739 23339846 ~ 23342677 (+)
G75427 NA non-coding downstream 249343 23883177 ~ 23884631 (+)
G75483 ptpn6 non-coding downstream 309659 23943493 ~ 23948403 (+)
G75493 NA non-coding downstream 338493 23972327 ~ 23975734 (+)
G75517 NA non-coding downstream 394049 24027883 ~ 24031339 (+)
G75523 tpi1,tpi,LOC102304959 non-coding downstream 415091 24048925 ~ 24052956 (+)
trpv6 LOC104929027,LOC104960406,LOC103388006,LOC107082237 other upstream 60173 23560848 ~ 23571243 (+)
LOC120562612 LOC103367657,LOC105025867,LOC103136704 other upstream 137382 23491125 ~ 23494034 (+)
LOC120562293 LOC103360151,LOC102310947,LOC102785150 other upstream 548269 23070587 ~ 23083147 (+)
cnot3a cnot3 other upstream 719896 22900089 ~ 22911520 (+)
myh14 NA other upstream 811363 22785578 ~ 22820053 (+)
casp2 casp2,LOC102795506,LOC103369458 other downstream 7721 23641555 ~ 23651496 (+)
LOC120563204 NA other downstream 134399 23768233 ~ 23813408 (+)
LOC120563047 vamp1,LOC104928996 other downstream 240075 23873909 ~ 23879415 (+)
atn1 atn1 other downstream 393081 24026915 ~ 24039427 (+)
lpcat3 lpcat3 other downstream 422603 24056437 ~ 24073698 (+)

Expression


Co-expression Network