LOC120562235


Basic Information

Item Value
gene id LOC120562235
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 30216748 ~ 30218603 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005639712.1
TCTCACTTAGACACCTCGTCACTCAATGCTAAATACTTGAAGATGGCTGTGGggatcatcttcttcttcatcggCTTCTCTGCAGCTACTGGTGGAGCAGCTTACTACTGGTGGAAACAGAGGTTTGACTTCAGCCAATCAGGCAGACAAGCACAAACTCCATGTGATCCCTCAGAATTGTTGAGTTATTAACAGAATAAGATAAAGCTCTGCTGAAGATCTGAATTAGGATGCAATATAAAGTATTAAAGCTGGTGACCCCTTcagcccacaaaaaaaaaagaaaattatccCTCTCAGCATGCCTGACCTACAGTGGAAGGAGAAAAACGACATCGTGGGAAGATGACATGCTGTTGTTTCCCCCCCAGCATGGTGGAGCGCCTCCTTTATCATTTTTGTCAACCAAGGACTTAACCGACATGTTATCCTTCAAAACAAAGTGCCATAAATTGTTTCAACGTTGTGTTAGGATCATCTTGTAGAATTAGGTGTCAGACCTGTCACTTACAATAACGGTTTCACCTTGGTTTGAAACTTATCATCTTTACATGACATGcagttcatttattttgtattgaatTCATTCATTTAGTTAAATTATATATTCTTAAGGTTTCCCTTTCACTATATGATCATCTAAACACTGTGGCATTGTGACTTCTCTACACTTCcacactgcaaaaaaataaaaaactgatttaaagctgctgtaatcaatatttttatattaataatggATCACATGACAACATGTATGTTTACAGGTGTCAGTCATAGTGAGGAACCCACAGAGGAGTATCACTGGACTCtgtagttcccctcagctccaCGTGTCTTTCAGCGAAAGGTTTTGTTTTCTGTAGCCGACAGGCAGCTGTTACCAGCGGGAAAAAAACTCTACAAACCTACTGTACACTATTTGCTAAGCAACAAATgatagacagacaaagttaggtTAAGAAAATTTAGTATTTTGAAGATAaaaagccagatatttccctcaagagttggtagagaccaaaaacaactACATTGATCAGGTGGCCTGAAAAGAATGATAACGTTTCTCCGTATCTAGTGGTTGTGTAAATAAggaactgtttgctaacaagttcgcCATATCAACTTAAATGGTCATAAGATGGTGATTACGGCCTGTTACCGCTGCACCCAAGCAGCCCAACAAATGTATTCTTGTAGATTTAGAAGATATTGAGTCTGAATAACATCATAATCAGCCTCACACCATGTGTAATTTGCAAACTTCTCCTCAGGTCCCAAACTCTCAGGTACTATACTGTAGACATGACAGGAGTTGGTAGCTACGACCCATTCTGTATATTAATGCATTGAGAATAACTATACAGTGTCATGTACAGTACACTTATGTAATATGCTAGATGGTAAAAGTTCAAGTTCATGCAGTCTGTAAAAGTGTTTTGTCAGCCTACCGTCCATTATTTGTCCTATATATGTAGATAATGTAAGATAATAGGTATTATTTTTATGTTCATGTGTAAATATGAGTGTCAGTGTGTAAAGATGTATGTATACAGTGATATCTTGATCACCATAATAAGAGTATAACGCTGCTTTCCTTAATTCAGTAAACATGGGCTTTATCAGTCCCCGGTGATATACAGTAGGGTGTGGATGTCTGCATATCCTGGCGAGACAAAATAAACCTTTTCTAATCTCTTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005639712.1 True 1704 lncRNA 0.38 2 30216748 30218603

Neighbor

gene id symbol gene type direction distance location
LOC120562442 NA coding upstream 53 30212639 ~ 30216695 (+)
LOC120562234 NA coding upstream 4512 30205177 ~ 30212236 (+)
brd2b LOC104928643,LOC103356858 coding upstream 11692 30186346 ~ 30205056 (+)
tap1 tap1 coding upstream 34606 30170014 ~ 30182142 (+)
LOC120561633 NA coding upstream 79179 30136281 ~ 30137569 (+)
LOC120561719 vmo1 coding downstream 394 30218997 ~ 30223524 (+)
LOC120562225 LOC103356864 coding downstream 144104 30362707 ~ 30390432 (+)
si:dkey-82o10.4 NA coding downstream 486428 30705031 ~ 30713391 (+)
LOC120562210 LOC103357958,LOC107379173,LOC102233395,LOC103388353,LOC100705137,LOC103477709,LOC106523089 coding downstream 690427 30909030 ~ 30949188 (+)
LOC120562211 ube2e1,LOC106534515,LOC101480162,LOC103357960,LOC100705406 coding downstream 732630 30951233 ~ 30965417 (+)
LOC120562092 NA non-coding upstream 95652 30118008 ~ 30121096 (+)
G77198 LOC103388947,LOC102796900,LOC101464846 non-coding upstream 317995 29894234 ~ 29898753 (+)
G77172 NA non-coding upstream 403207 29812931 ~ 29813541 (+)
G77114 bola1 non-coding upstream 631748 29582757 ~ 29585000 (+)
G77097 NA non-coding upstream 751196 29464612 ~ 29465552 (+)
G77260 NA non-coding downstream 179673 30398276 ~ 30402704 (+)
G77399 NA non-coding downstream 758138 30976741 ~ 30977081 (+)
LOC120562708 NA non-coding downstream 759724 30978327 ~ 30988733 (+)
LOC120562710 NA non-coding downstream 796530 31015133 ~ 31016447 (+)
G77555 NA non-coding downstream 1295533 31514136 ~ 31514561 (+)
G77239 NA other upstream 92110 30123702 ~ 30124638 (+)
rgl2 LOC101463702,LOC100700084,LOC102303531,LOC102796597 other upstream 107203 30073937 ~ 30109545 (+)
G77028 LOC104942601 other upstream 804335 29404008 ~ 29412413 (+)
LOC120562177 LOC104942602,LOC104934039,LOC103362363 other upstream 826695 29384135 ~ 29390053 (+)
G77009 ubqln4 other upstream 886490 29328789 ~ 29330258 (+)
LOC120562443 NA other downstream 132892 30351495 ~ 30360588 (+)
rab5ab rab5a,LOC104947906,LOC103388351,LOC105936747,LOC100704868,LOC101078239,LOC104931780 other downstream 468735 30687338 ~ 30731609 (+)
G77447 NA other downstream 916226 31134829 ~ 31136146 (+)
G77682 tbx20 other downstream 1757715 31976318 ~ 31979909 (+)
LOC120561717 NA other downstream 2186530 32405133 ~ 32421472 (+)

Expression


Co-expression Network