LOC120562239


Basic Information

Item Value
gene id LOC120562239
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 7537628 ~ 7538242 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005639713.1
gagcagaacgtgtgtaaggcagggttgtaaaataggaatgtgtaagtgtcctcttacaacaggccaagGAAGTGTCTGAGCCCCCAAAAAGTCTGCACACCCGCACTAATGCTCGCCCCTAAATAGGCAATAAAGTGTTTACCACATGTTTGGAAGAAACATGTGCTTCATTCAGCCTACTCTCCCACTCGGCTTTGCATACAGACCGTCACTTCATTCAGAGGAGTCAAAATGATTCAGTCACAGTACTTTTCAGAAATCAATGACGAGGACTTTAGAGATATCGTAATCACAGATGACGATTTTGGCGTGATAGATGACAGAGGCGTTGCATATAACAATCAAAATCCAGCAGTCTTTACAGGGGttattgaaattgaggaggTAATGCCTGAAGAAAGACCACGGGCCAACGGGCAGCCAATTGTGCTGCGAGACG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005639713.1 True 439 lncRNA 0.45 3 7537628 7538242

Neighbor

gene id symbol gene type direction distance location
fzd1 fzd1,LOC104958298,LOC104925482 coding upstream 239386 7295946 ~ 7298242 (+)
LOC120562880 NA coding upstream 507867 7004604 ~ 7029761 (+)
tsnare1 tsnare1,LOC101472715 coding upstream 732028 6636852 ~ 6805600 (+)
LOC120561876 NA coding upstream 1722986 5812877 ~ 5814642 (+)
LOC120562247 NA coding upstream 2180334 5355807 ~ 5357294 (+)
LOC120561797 NA coding downstream 126996 7665238 ~ 7707591 (+)
LOC120561799 NA coding downstream 193584 7731826 ~ 7741034 (+)
rbm42 rbm42 coding downstream 229517 7767759 ~ 7783482 (+)
LOC120563115 LOC104936139,LOC100707989,LOC101475232,LOC102313234 coding downstream 347455 7885697 ~ 7904575 (+)
gpd1l gpd1l,LOC103034694,LOC108434205,LOC107600618 coding downstream 491440 8029682 ~ 8046678 (+)
G71082 NA non-coding upstream 16248 7510789 ~ 7521380 (+)
G71081 NA non-coding upstream 17587 7509226 ~ 7520041 (+)
G71080 NA non-coding upstream 25799 7506833 ~ 7511829 (+)
G71072 NA non-coding upstream 117731 7419697 ~ 7419897 (+)
G71054 NA non-coding upstream 161348 7374401 ~ 7376280 (+)
G71090 NA non-coding downstream 4207 7542449 ~ 7559399 (+)
G71091 NA non-coding downstream 28865 7567107 ~ 7567414 (+)
LOC120561796 NA non-coding downstream 117921 7656163 ~ 7660085 (+)
G71150 NA non-coding downstream 204390 7742632 ~ 7744001 (+)
G71148 NA non-coding downstream 258099 7796341 ~ 7802015 (+)
znrf2b znrf2 other upstream 37446 7456767 ~ 7500182 (+)
cdk14 cdk14 other upstream 245193 7039163 ~ 7292435 (+)
G70894 NA other upstream 1576774 5960455 ~ 5960854 (+)
si:ch211-198c19.1 NA other upstream 1942728 5591199 ~ 5594900 (+)
LOC120562244 zdhhc3,LOC103364625,LOC101488043,LOC107102987 other upstream 2070538 5336214 ~ 5467090 (+)
G71147 LOC103388722,LOC104941093,LOC103369890 other downstream 192780 7731022 ~ 7801380 (+)
G71309 NA other downstream 583359 8121601 ~ 8122239 (+)
ano10a ano10 other downstream 745138 8283380 ~ 8309744 (+)
G71470 rrp15,LOC106584165,LOC106605018 other downstream 1210701 8748943 ~ 8751443 (+)
LOC120561899 LOC104959271 other downstream 1221804 8760046 ~ 8776508 (+)

Expression


Co-expression Network