LOC120562313


Basic Information

Item Value
gene id LOC120562313
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 11236294 ~ 11309852 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005639740.1
CTTAAAGAACAGGCTGTTTTTCTGCATAGCTGGAGCCAGATAGAGGCTATTCCAACGGGGGCCACTCTCTCTATTCAACGAGAGAGGGGAGAGCGCTGCTGGTGGAAGAGCAGTGGGGTGGGGGCGAGGGAtggaggaagaaggaaggagagagggagggagggagaggaaaaaCGTGTAATCACCCAAACAACCATTTTTACCCATTTCACCCCCTCTGGATCTGTGTCGCAAGtctgcCGGGAGCTTATCTGTCTTTCGCTGCGGATACCGTGAAGGCAGGCCGGACCGTGAGGAAGACACCAAGAGgaggaagaggataATCAGATGCCCGGGAGGACGGGAAATCGCGtgccaaaaaacacattactCCTTGAATTCCAATTTGCACAGAGATGAAAAATGGCATGCAGCTGGCCGAGTACTTCCTTCCCCTTGTCGGGGTCAGCAGTTCACTATGCTGATGGAGACCCTCACACCTTCATTAATAAGAGTCCCCCTGCACTCACACAGGTCGCTTCGCTGCATCGCTGGACGCTCATCACTCCTACCTTTTGTCTGGATTTCCTATCATTACATTCCTCCGTCGCTGCATGAGCCAGTGATTATTTTGCCgatgactgacagctgctgtttttcatttttggtaTTTTAGCCAGCCGGCTGACGTTGAACATTGAATCCCTGACCTTATGTCAATATGGTTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005639740.1 True 708 lncRNA 0.51 4 11236294 11309852

Neighbor

gene id symbol gene type direction distance location
LOC120561921 LOC104943362,LOC103369138 coding upstream 219712 11010980 ~ 11016582 (+)
macf1b LOC102795676,LOC102290681,LOC101484559,LOC100704065,LOC104943360 coding upstream 233824 10961890 ~ 11002470 (+)
rspo2 rspo2 coding upstream 507173 10662478 ~ 10729121 (+)
eif3ea eif3e,LOC101480544,LOC102302331,LOC100691937 coding upstream 579498 10621192 ~ 10656796 (+)
LOC120561655 tmem74,LOC103359617 coding upstream 717303 10516857 ~ 10518991 (+)
LOC120562012 LOC103388795,LOC103359769 coding downstream 289262 11599114 ~ 11616059 (+)
LOC120562594 znf516 coding downstream 411264 11721116 ~ 11768925 (+)
LOC120562168 zadh2,LOC102799231 coding downstream 661025 11970877 ~ 11975946 (+)
LOC120561949 zhx2,LOC104959811 coding downstream 1117689 12427541 ~ 12455916 (+)
tbc1d31 tbc1d31 coding downstream 1156097 12465949 ~ 12476564 (+)
G71838 NA non-coding upstream 48936 11187122 ~ 11187358 (+)
G71835 NA non-coding upstream 73249 11162696 ~ 11163045 (+)
G71826 NA non-coding upstream 116086 11119919 ~ 11120208 (+)
LOC120562885 NA non-coding upstream 483642 10748123 ~ 10752652 (+)
G71741 NA non-coding upstream 492023 10744011 ~ 10744271 (+)
G71873 NA non-coding downstream 126619 11436471 ~ 11436699 (+)
G71882 NA non-coding downstream 173554 11483406 ~ 11483643 (+)
G71921 NA non-coding downstream 396705 11706557 ~ 11772009 (+)
G71929 NA non-coding downstream 511788 11821640 ~ 11821934 (+)
G71952 NA non-coding downstream 902158 12212010 ~ 12215147 (+)
LOC120562569 LOC104943359,LOC103359623,LOC101482188,LOC107100615,LOC106961743 other upstream 275164 10785654 ~ 10961130 (+)
G71743 NA other upstream 414794 10820295 ~ 10821500 (+)
LOC120561920 LOC106676202,LOC102303534 other upstream 484445 10746008 ~ 10751849 (+)
G71610 NA other upstream 1028097 10207415 ~ 10208197 (+)
trnay-gua_42 NA other upstream 2386574 8849632 ~ 8849720 (+)
depdc1b depdc1b,LOC103388656,LOC101486657 other downstream 157493 11467345 ~ 11482423 (+)
mbpb mbp,LOC104918400 other downstream 227332 11537184 ~ 11599226 (+)
G71896 LOC103388795 other downstream 289185 11599037 ~ 11616242 (+)
LOC120561922 NA other downstream 398529 11708381 ~ 11710258 (+)
LOC120563165 scx other downstream 1401750 12711602 ~ 12729226 (+)

Expression


Co-expression Network