LOC120562333


Basic Information

Item Value
gene id LOC120562333
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 5137604 ~ 5138005 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005639744.1
caagtccagatttacatgacgctgataatgacgccattgtgtctgcctgtaaacTACGAGACAGCACGCAGGAGCTTCAGCTAGAAACAATCATGTGGCAtcgcgggcagaagctgtgaagagttcagctcggagtcggtcgagaagaaaagaggctgctggaagcgagacagagtgctggctgcgggtgaggtgg

Function

GO:

id name namespace
GO:0009108 obsolete coenzyme biosynthetic process biological_process
GO:0006733 obsolete oxidoreduction coenzyme metabolic process biological_process
GO:0019359 nicotinamide nucleotide biosynthetic process biological_process
GO:0019362 pyridine nucleotide metabolic process biological_process
GO:0019363 pyridine nucleotide biosynthetic process biological_process
GO:0009435 NAD biosynthetic process biological_process
GO:0072524 pyridine-containing compound metabolic process biological_process
GO:0072525 pyridine-containing compound biosynthetic process biological_process
GO:0019674 NAD metabolic process biological_process
GO:0046496 nicotinamide nucleotide metabolic process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005639744.1 True 196 lncRNA 0.54 3 5137604 5138005

Neighbor

gene id symbol gene type direction distance location
LOC120562920 mc5r,LOC101487483,LOC100693278,LOC102795483 coding upstream 71931 4946358 ~ 5065673 (+)
cep192 cep192 coding upstream 566295 4474006 ~ 4571309 (+)
seh1l seh1l coding upstream 664937 4463437 ~ 4472667 (+)
LOC120561648 LOC106523394 coding upstream 1247546 3889015 ~ 3890058 (+)
ebag9 ebag9 coding upstream 1264704 3854146 ~ 3872900 (+)
LOC120562247 NA coding downstream 217802 5355807 ~ 5357294 (+)
LOC120561876 NA coding downstream 674872 5812877 ~ 5814642 (+)
tsnare1 tsnare1,LOC101472715 coding downstream 1498847 6636852 ~ 6805600 (+)
LOC120562880 NA coding downstream 1866599 7004604 ~ 7029761 (+)
fzd1 fzd1,LOC104958298,LOC104925482 coding downstream 2157941 7295946 ~ 7298242 (+)
G70697 fam210a,LOC102795199 non-coding upstream 222804 4902398 ~ 4914800 (+)
G70702 NA non-coding upstream 226361 4908001 ~ 4911243 (+)
G70681 NA non-coding upstream 240102 4896295 ~ 4897502 (+)
G70688 NA non-coding upstream 259120 4878235 ~ 4878484 (+)
G70687 NA non-coding upstream 260577 4876593 ~ 4877027 (+)
G70756 NA non-coding downstream 9415 5147420 ~ 5147658 (+)
G70782 NA non-coding downstream 103671 5241676 ~ 5246140 (+)
G70787 NA non-coding downstream 135971 5273976 ~ 5274205 (+)
G70793 NA non-coding downstream 149131 5287136 ~ 5287529 (+)
G70794 NA non-coding downstream 159711 5297716 ~ 5299327 (+)
LOC120562617 ldlrad4 other upstream 245547 4810388 ~ 4892057 (+)
G70654 NA other upstream 471498 4665784 ~ 4666106 (+)
trnar-ucg_13 NA other upstream 1024323 4113209 ~ 4113281 (+)
trnai-aau_22 NA other upstream 1024680 4112851 ~ 4112924 (+)
trnar-ucg_12 NA other upstream 1025369 4112163 ~ 4112235 (+)
LOC120562244 zdhhc3,LOC103364625,LOC101488043,LOC107102987 other downstream 198209 5336214 ~ 5467090 (+)
si:ch211-198c19.1 NA other downstream 453194 5591199 ~ 5594900 (+)
G70894 NA other downstream 822450 5960455 ~ 5960854 (+)
cdk14 cdk14 other downstream 1901158 7039163 ~ 7292435 (+)
znrf2b znrf2 other downstream 2318762 7456767 ~ 7500182 (+)

Expression


Co-expression Network