LOC120562636


Basic Information

Item Value
gene id LOC120562636
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 13445866 ~ 13448239 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005639803.1
CTCATCTGCTATCTTAGCCTGAGAGGGGGATGAGTATCacgaggaaagagagaggctGGCCCTAATATGTGACGTAAAACCTCCCACCGGTGGGATGAAAGAAGTGGACCTGTTCCGCCCCCGTCCTGGTGGTCAGCTTACAGACAGTGGCTCCTCTTCCTGTTTGTCCTCCTGCTTGGGGACATCCAGCCGGTCTATGAAGCTCTGCAGCTCCTTCCTGAAGGCTTTCATCTGCGCGGTGATACGATACAGCAGCTCATGTTCTCGGATCCTGTTGAGCACAGCCTTGCAAACAGCTCCCCGTTGGTGACATATACTCGTGCCTCGGCGATGATAGTGCTGGTGTCAGCGATGAGCCTATCGATGGTCCGACCCAGCCTCTCCGCCTCGATGCG

Function

GO:

id name namespace
GO:0010506 regulation of autophagy biological_process
GO:0005615 extracellular space cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005639803.1 True 395 lncRNA 0.56 4 13445866 13448239

Neighbor

gene id symbol gene type direction distance location
LOC120561886 LOC103353818,LOC102295432,LOC102785128,LOC101482972 coding upstream 27414 13414324 ~ 13418452 (+)
rspo3 rspo3,LOC103353817 coding upstream 33945 13395438 ~ 13411921 (+)
trmt11 trmt11 coding upstream 181774 13252697 ~ 13264092 (+)
LOC120561555 ncoa7,LOC104938018 coding upstream 202641 13239114 ~ 13243225 (+)
cmtm8b cmtm8 coding upstream 230511 13211579 ~ 13215355 (+)
LOC120562882 LOC104926221,LOC103388613,LOC103353832 coding downstream 161379 13609618 ~ 13621344 (+)
zgc:110410 LOC104941306 coding downstream 610401 14058640 ~ 14068948 (+)
LOC120561614 NA coding downstream 1135796 14584035 ~ 14588452 (+)
si:cabz01093077.1 NA coding downstream 1142004 14590243 ~ 14593984 (+)
LOC120561707 NA coding downstream 1152650 14600889 ~ 14603683 (+)
G72242 NA non-coding upstream 236832 13208828 ~ 13209034 (+)
G72199 NA non-coding upstream 321339 13119637 ~ 13124527 (+)
G72198 NA non-coding upstream 325765 13112215 ~ 13120101 (+)
LOC120562936 NA non-coding upstream 499878 12896310 ~ 12945988 (+)
G72134 NA non-coding upstream 562097 12826651 ~ 12883769 (+)
G72309 NA non-coding downstream 23512 13471751 ~ 13473470 (+)
G72314 NA non-coding downstream 27131 13475370 ~ 13483111 (+)
G72319 NA non-coding downstream 83886 13532125 ~ 13533002 (+)
LOC120561831 NA non-coding downstream 638364 14086603 ~ 14087796 (+)
G72466 NA non-coding downstream 715297 14163536 ~ 14163744 (+)
hint3 hint3 other upstream 195756 13245668 ~ 13250110 (+)
G72204 ctnnb1,LOC103388302 other upstream 319969 13124934 ~ 13125897 (+)
LOC120562335 NA other upstream 672427 12760817 ~ 12773439 (+)
LOC120563165 scx other upstream 716640 12711602 ~ 12729226 (+)
LOC120561922 NA other upstream 1735608 11708381 ~ 11710258 (+)
prelid3a prelid3a other downstream 19972 13468211 ~ 13471516 (+)
LOC120562530 ext1,LOC103135121 other downstream 111521 13559760 ~ 13606245 (+)
LOC120562711 eif3h other downstream 176209 13624448 ~ 13688514 (+)
LOC120561928 csmd3,LOC101478087,LOC108232275,LOC102799137,LOC102309299,LOC102195523 other downstream 305814 13754053 ~ 14046136 (+)
cmc1 cmc1 other downstream 685345 14133584 ~ 14144296 (+)

Expression


Co-expression Network